Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002166

Physical Location & Seq

Genomic Coordinates Reverse (-)

18964083 .. 18966904

Gene Structure 2822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G010860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGCAGATTTTCGTGAAAACCCTAATGGGGAAGACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCCCCGGACCAGCAGCGTTTGATTTTAGTCGGAAAGCAGCTCGAAGAAGGCCGCACCTTGGCCAACTACAACATCCAGAAAGAGTCGACTCTTCATTTGGTGCTGAGGCTCCGTGGAGGTATCATCGAGCCTTCTTTGATGGCCTTGGCTTGCAAGTACAATAAGGAGAAGATGATTTGCAGAAAATGTTATGCTCATCTACACCCAAGGGCTGTCAACTGTAGGAAGAAGAAGTGTGGCCACAGCAATCAGCAACCAAAAACAACATTGTGTTTGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 ko03320 map03010 map03320

Pfam Domains

Protein Families

Ribosomal_L40e ubiquitin

Protein Analysis

119

Amino Acids

13.63

Weight (kDa)

9.87

Isoelectric Point (pI)

45.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	3 - 64	1.3e-20	Ubiquitin family
Rad60-SLD	PF11976	4 - 61	5.1e-09	Ubiquitin-2 like Rad60 SUMO-like
Ribosomal_L40e	PF01020	68 - 110	2.9e-25	Ribosomal L40e family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36170 AT3G52590
fragaria_vesca	FvH4_6g19302 FvH4_6g19302 FvH4_7g32551
malus_domestica	MD01G1226400.v1.1 MD07G1296800.v1.1 MD12G1028600.v1.1 MD14G1028800.v1.1
prunus_persica	Prupe.2G316400_v2.0.a1 Prupe.7G102800_v2.0.a1
pyrus_communis	pycom01g23500 pycom07g26950 pycom12g02740 pycom14g02690
rosa_chinensis	RchiOBHm_Chr1g0336321 RchiOBHm_Chr1g0382401 RchiOBHm_Chr2g0129851 RchiOBHm_Chr2g0148571 RchiOBHm_Chr2g0162391 RchiOBHm_Chr3g0474431 RchiOBHm_Chr3g0474471 RchiOBHm_Chr3g0485451 RchiOBHm_Chr4g0402971
rosa_multiflora	Rmu_sc0000048.1_g000015 Rmu_sc0009916.1_g000009
rosa_roxburghii	Rroxscaffold_1G00002380 Rroxscaffold_4G00278130
rosa_rugosa	Rorug01G0434100 Rorug03G0140900
rosa_samantha	Rh1AG458800 Rh1BG415100 Rh1CG429200 Rh1DG447200 Rh2BG576000 Rh3AG191600 Rh3AG267800 Rh3BG221100 Rh3BG221300 Rh4CG124000
rosa_wichuraiana	Rw1G041220 Rw3G017490 Rw6G010860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	164
AciI	CCGC	1 cut(s)	130
AclWI	GGATC	1 cut(s)	52
AcoI	YGGCCR	2 cut(s)	138, 316
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	3 cut(s)	27, 67, 136
AluBI	AGCT	1 cut(s)	118
AluI	AGCT	1 cut(s)	118
AlwI	GGATC	1 cut(s)	52
AoxI	GGCC	5 cut(s)	51, 127, 138, 219, 316
ApeKI	GCWGC	2 cut(s)	91, 115
ArsI	GACNNNNNNTTYG	2 cut(s)	157, 189
Asp700I	GAANNNNTTC	1 cut(s)	75
AspS9I	GGNCC	1 cut(s)	85
AsuC2I	CCSGG	1 cut(s)	83
AvaII	GGWCC	1 cut(s)	85
BalI	TGGCCA	2 cut(s)	140, 318
BbsI	GAAGAC	1 cut(s)	38
BbvCI	CCTCAGC	1 cut(s)	182
BbvI	GCAGC	2 cut(s)	103, 127
BccI	CCATC	2 cut(s)	44, 211
BcnI	CCSGG	1 cut(s)	83
BfmI	CTRYAG	1 cut(s)	298
BisI	GCNGC	3 cut(s)	92, 116, 130
BlsI	GCNGC	3 cut(s)	93, 117, 131
Bme1390I	CCNGG	1 cut(s)	83
Bme18I	GGWCC	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	1 cut(s)	188
BmrFI	CCNGG	1 cut(s)	83
BpiI	GAAGAC	1 cut(s)	38
Bpu10I	CCTNAGC	1 cut(s)	182
BpuMI	CCSGG	1 cut(s)	83
BsaJI	CCNNGG	5 cut(s)	81, 135, 190, 222, 284
Bsc4I	CCNNNNNNNGG	3 cut(s)	27, 67, 136
BseDI	CCNNGG	5 cut(s)	81, 135, 190, 222, 284
BseGI	GGATG	1 cut(s)	150
BseLI	CCNNNNNNNGG	3 cut(s)	27, 67, 136
BseMII	CTCAG	1 cut(s)	173
BseXI	GCAGC	2 cut(s)	103, 127
BshFI	GGCC	5 cut(s)	53, 129, 140, 221, 318
BsiSI	CCGG	1 cut(s)	83
BslI	CCNNNNNNNGG	3 cut(s)	27, 67, 136
BsmI	GAATGC	1 cut(s)	75
BsnI	GGCC	5 cut(s)	53, 129, 140, 221, 318
Bsp143I	GATC	1 cut(s)	57
BspACI	CCGC	1 cut(s)	130
BspANI	GGCC	5 cut(s)	53, 129, 140, 221, 318
BspCNI	CTCAG	1 cut(s)	174
BspLI	GGNNCC	1 cut(s)	188
BspPI	GGATC	1 cut(s)	52
BssECI	CCNNGG	5 cut(s)	81, 135, 190, 222, 284
BssMI	GATC	1 cut(s)	57
BssT1I	CCWWGG	3 cut(s)	135, 222, 284
Bst4CI	ACNGT	1 cut(s)	299
Bst6I	CTCTTC	1 cut(s)	174
BstC8I	GCNNGC	1 cut(s)	229
BstDEI	CTNAG	1 cut(s)	182
BstDSI	CCRYGG	1 cut(s)	190
BstF5I	GGATG	1 cut(s)	150
BstKTI	GATC	1 cut(s)	60
BstMBI	GATC	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	81
BstSFI	CTRYAG	1 cut(s)	298
BstV1I	GCAGC	2 cut(s)	103, 127
BstV2I	GAAGAC	1 cut(s)	38
BstX2I	RGATCY	1 cut(s)	57
BstYI	RGATCY	1 cut(s)	57
BsuRI	GGCC	5 cut(s)	53, 129, 140, 221, 318
BtgI	CCRYGG	1 cut(s)	190
BtsCI	GGATG	1 cut(s)	150
Cac8I	GCNNGC	1 cut(s)	229
Cfr13I	GGNCC	1 cut(s)	85
Csp6I	GTAC	1 cut(s)	235
CviQI	GTAC	1 cut(s)	235
DdeI	CTNAG	1 cut(s)	182
DpnI	GATC	1 cut(s)	59
DpnII	GATC	1 cut(s)	57
EaeI	YGGCCR	2 cut(s)	138, 316
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
Eco130I	CCWWGG	3 cut(s)	135, 222, 284
Eco47I	GGWCC	1 cut(s)	85
EcoT14I	CCWWGG	3 cut(s)	135, 222, 284
ErhI	CCWWGG	3 cut(s)	135, 222, 284
FaiI	YATR	1 cut(s)	270
FblI	GTMKAC	1 cut(s)	164
Fnu4HI	GCNGC	3 cut(s)	92, 116, 130
FokI	GGATG	1 cut(s)	137
Fsp4HI	GCNGC	3 cut(s)	92, 116, 130
GluI	GCNGC	3 cut(s)	92, 116, 130
HaeIII	GGCC	5 cut(s)	53, 129, 140, 221, 318
HapII	CCGG	1 cut(s)	83
HincII	GTYRAC	2 cut(s)	165, 295
HindII	GTYRAC	2 cut(s)	165, 295
HinfI	GANTC	2 cut(s)	161, 166
HpaII	CCGG	1 cut(s)	83
Hpy166II	GTNNAC	2 cut(s)	165, 295
Hpy188I	TCNGA	1 cut(s)	110
Hpy188III	TCNNGA	2 cut(s)	13, 154
Hpy8I	GTNNAC	2 cut(s)	165, 295
HpyAV	CCTTC	3 cut(s)	65, 119, 219
HpyCH4III	ACNGT	1 cut(s)	299
HpyCH4V	TGCA	3 cut(s)	4, 231, 258
HpyF3I	CTNAG	1 cut(s)	182
Kzo9I	GATC	1 cut(s)	57
LmnI	GCTCC	1 cut(s)	192
LpnPI	CCDG	3 cut(s)	96, 101, 167
Lsp1109I	GCAGC	2 cut(s)	103, 127
MalI	GATC	1 cut(s)	59
MboI	GATC	1 cut(s)	57
MboII	GAAGA	6 cut(s)	43, 134, 161, 259, 316, 319
MflI	RGATCY	1 cut(s)	57
MlsI	TGGCCA	2 cut(s)	140, 318
MluNI	TGGCCA	2 cut(s)	140, 318
MlyI	GAGTC	2 cut(s)	160, 170
MmeI	TCCRAC	1 cut(s)	88
MnlI	CCTC	3 cut(s)	177, 188, 348
Mox20I	TGGCCA	2 cut(s)	140, 318
MroXI	GAANNNNTTC	1 cut(s)	75
MscI	TGGCCA	2 cut(s)	140, 318
Msp20I	TGGCCA	2 cut(s)	140, 318
MspI	CCGG	1 cut(s)	83
MspR9I	CCNGG	1 cut(s)	83
Mva1269I	GAATGC	1 cut(s)	75
NciI	CCSGG	1 cut(s)	83
NdeII	GATC	1 cut(s)	57
NlaIV	GGNNCC	1 cut(s)	188
PctI	GAATGC	1 cut(s)	75
PdmI	GAANNNNTTC	1 cut(s)	75
PflFI	GACNNNGTC	1 cut(s)	44
PkrI	GCNGC	3 cut(s)	93, 117, 131
PleI	GAGTC	2 cut(s)	160, 169
PpsI	GAGTC	2 cut(s)	160, 169
PspN4I	GGNNCC	1 cut(s)	188
PspPI	GGNCC	1 cut(s)	85
PsuI	RGATCY	1 cut(s)	57
PsyI	GACNNNGTC	1 cut(s)	44
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
SalI	GTCGAC	1 cut(s)	163
SatI	GCNGC	3 cut(s)	92, 116, 130
Sau3AI	GATC	1 cut(s)	57
Sau96I	GGNCC	1 cut(s)	85
SchI	GAGTC	2 cut(s)	160, 170
ScrFI	CCNGG	1 cut(s)	83
SetI	ASST	4 cut(s)	120, 137, 199, 359
SfcI	CTRYAG	1 cut(s)	298
SinI	GGWCC	1 cut(s)	85
SsiI	CCGC	1 cut(s)	130
StyD4I	CCNGG	1 cut(s)	81
StyI	CCWWGG	3 cut(s)	135, 222, 284
TaaI	ACNGT	1 cut(s)	299
TaqI	TCGA	4 cut(s)	39, 120, 164, 204
TatI	WGTACW	1 cut(s)	234
TauI	GCSGC	1 cut(s)	132
TseI	GCWGC	2 cut(s)	91, 115
TspDTI	ATGAA	1 cut(s)	161
TspGWI	ACGGA	1 cut(s)	179
Tth111I	GACNNNGTC	1 cut(s)	44
VpaK11BI	GGWCC	1 cut(s)	85
XmiI	GTMKAC	1 cut(s)	164
XmnI	GAANNNNTTC	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.