Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0002166

Physical Location & Seq

Genomic Coordinates Forward (+)

13231560 .. 13233487

Gene Structure 1928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G102800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGCAGATTTTCGTGAAAACCCTAACCGGGAAGACCATCACTCTCGAGGTCGAGAGCAGCGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGAATTCCACCAGACCAGCAGCGTTTGATTTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCTTGGCTGACTATAACATCCAGAAAGAATCAACTCTTCATCTTGTTCTGAGGCTCCGTGGAGGTATTATTGAGCCTTCTTTGATGGCTTTGGCTCGCAAATACAACCAGGACAAAATGATTTGCAGAAAATGTTATGCTCGGCTGCATCCAAGGGCAGTGAACTGTAGGAAGAAGAAGTGTGGCCACAGCAACCAGTTGAGGCCAAAGAAGAAGGTCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 ko03320 map03010 map03320

Pfam Domains

Protein Families

Ribosomal_L40e ubiquitin

Protein Analysis

129

Amino Acids

14.66

Weight (kDa)

9.94

Isoelectric Point (pI)

33.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36170 AT3G52590
fragaria_vesca	FvH4_6g19302 FvH4_6g19302 FvH4_7g32551
malus_domestica	MD01G1226400.v1.1 MD07G1296800.v1.1 MD12G1028600.v1.1 MD14G1028800.v1.1
prunus_persica	Prupe.2G316400_v2.0.a1 Prupe.7G102800_v2.0.a1
pyrus_communis	pycom01g23500 pycom07g26950 pycom12g02740 pycom14g02690
rosa_chinensis	RchiOBHm_Chr1g0336321 RchiOBHm_Chr1g0382401 RchiOBHm_Chr2g0129851 RchiOBHm_Chr2g0148571 RchiOBHm_Chr2g0162391 RchiOBHm_Chr3g0474431 RchiOBHm_Chr3g0474471 RchiOBHm_Chr3g0485451 RchiOBHm_Chr4g0402971
rosa_multiflora	Rmu_sc0000048.1_g000015 Rmu_sc0009916.1_g000009
rosa_roxburghii	Rroxscaffold_1G00002380 Rroxscaffold_4G00278130
rosa_rugosa	Rorug01G0434100 Rorug03G0140900
rosa_samantha	Rh1AG458800 Rh1BG415100 Rh1CG429200 Rh1DG447200 Rh2BG576000 Rh3AG191600 Rh3AG267800 Rh3BG221100 Rh3BG221300 Rh4CG124000
rosa_wichuraiana	Rw1G041220 Rw3G017490 Rw6G010860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	160
AclWI	GGATC	1 cut(s)	82
AcoI	YGGCCR	2 cut(s)	157, 346
AcsI	RAATTY	1 cut(s)	105
AfiI	CCNNNNNNNGG	3 cut(s)	27, 97, 166
AgsI	TTSAA	1 cut(s)	152
AjnI	CCWGG	1 cut(s)	270
AluBI	AGCT	1 cut(s)	148
AluI	AGCT	1 cut(s)	148
AlwI	GGATC	1 cut(s)	82
Ama87I	CYCGRG	1 cut(s)	44
AoxI	GGCC	4 cut(s)	81, 157, 346, 365
ApeKI	GCWGC	4 cut(s)	57, 121, 145, 307
ApoI	RAATTY	1 cut(s)	105
AsuC2I	CCSGG	1 cut(s)	28
AvaI	CYCGRG	1 cut(s)	44
BalI	TGGCCA	1 cut(s)	348
BbsI	GAAGAC	1 cut(s)	38
BbvI	GCAGC	4 cut(s)	69, 133, 157, 294
BccI	CCATC	4 cut(s)	44, 74, 149, 241
BciT130I	CCWGG	1 cut(s)	272
BcnI	CCSGG	1 cut(s)	28
BfmI	CTRYAG	1 cut(s)	328
BisI	GCNGC	5 cut(s)	58, 122, 146, 160, 308
BlsI	GCNGC	5 cut(s)	59, 123, 147, 161, 309
Bme1390I	CCNGG	2 cut(s)	28, 272
BmeT110I	CYCGRG	1 cut(s)	44
BmiI	GGNNCC	1 cut(s)	218
BmrFI	CCNGG	2 cut(s)	28, 272
BmsI	GCATC	1 cut(s)	319
BpiI	GAAGAC	1 cut(s)	38
BpuMI	CCSGG	1 cut(s)	28
BsaJI	CCNNGG	3 cut(s)	165, 220, 314
Bsc4I	CCNNNNNNNGG	3 cut(s)	27, 97, 166
Bse1I	ACTGG	1 cut(s)	358
BseBI	CCWGG	1 cut(s)	272
BseDI	CCNNGG	3 cut(s)	165, 220, 314
BseGI	GGATG	2 cut(s)	180, 310
BseLI	CCNNNNNNNGG	3 cut(s)	27, 97, 166
BseMII	CTCAG	1 cut(s)	203
BseNI	ACTGG	1 cut(s)	358
BseXI	GCAGC	4 cut(s)	69, 133, 157, 294
BshFI	GGCC	4 cut(s)	83, 159, 348, 367
BsiHKCI	CYCGRG	1 cut(s)	44
BsiSI	CCGG	1 cut(s)	27
BslI	CCNNNNNNNGG	3 cut(s)	27, 97, 166
BsnI	GGCC	4 cut(s)	83, 159, 348, 367
BsoBI	CYCGRG	1 cut(s)	44
Bsp143I	GATC	1 cut(s)	87
BspACI	CCGC	1 cut(s)	160
BspANI	GGCC	4 cut(s)	83, 159, 348, 367
BspCNI	CTCAG	1 cut(s)	204
BspLI	GGNNCC	1 cut(s)	218
BspPI	GGATC	1 cut(s)	82
BsrI	ACTGG	1 cut(s)	358
BssECI	CCNNGG	3 cut(s)	165, 220, 314
BssMI	GATC	1 cut(s)	87
BssT1I	CCWWGG	2 cut(s)	165, 314
Bst2UI	CCWGG	1 cut(s)	272
Bst4CI	ACNGT	1 cut(s)	329
Bst6I	CTCTTC	1 cut(s)	204
BstC8I	GCNNGC	3 cut(s)	139, 143, 259
BstDEI	CTNAG	1 cut(s)	212
BstDSI	CCRYGG	1 cut(s)	220
BstF5I	GGATG	2 cut(s)	180, 310
BstKTI	GATC	1 cut(s)	90
BstMBI	GATC	1 cut(s)	87
BstNI	CCWGG	1 cut(s)	272
BstSCI	CCNGG	2 cut(s)	26, 270
BstSFI	CTRYAG	1 cut(s)	328
BstV1I	GCAGC	4 cut(s)	69, 133, 157, 294
BstV2I	GAAGAC	1 cut(s)	38
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
BsuRI	GGCC	4 cut(s)	83, 159, 348, 367
BtgI	CCRYGG	1 cut(s)	220
BtsCI	GGATG	2 cut(s)	180, 310
BtsI	GCAGTG	1 cut(s)	327
BtsIMutI	CAGTG	1 cut(s)	327
Cac8I	GCNNGC	3 cut(s)	139, 143, 259
DdeI	CTNAG	1 cut(s)	212
DpnI	GATC	1 cut(s)	89
DpnII	GATC	1 cut(s)	87
EaeI	YGGCCR	2 cut(s)	157, 346
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
Eco130I	CCWWGG	2 cut(s)	165, 314
Eco88I	CYCGRG	1 cut(s)	44
EcoRI	GAATTC	1 cut(s)	105
EcoRII	CCWGG	1 cut(s)	270
EcoT14I	CCWWGG	2 cut(s)	165, 314
ErhI	CCWWGG	2 cut(s)	165, 314
FaiI	YATR	2 cut(s)	177, 300
Fnu4HI	GCNGC	5 cut(s)	58, 122, 146, 160, 308
FokI	GGATG	2 cut(s)	167, 297
Fsp4HI	GCNGC	5 cut(s)	58, 122, 146, 160, 308
GluI	GCNGC	5 cut(s)	58, 122, 146, 160, 308
HaeIII	GGCC	4 cut(s)	83, 159, 348, 367
HapII	CCGG	1 cut(s)	27
HinfI	GANTC	1 cut(s)	191
HpaII	CCGG	1 cut(s)	27
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	1 cut(s)	213
Hpy188III	TCNNGA	4 cut(s)	13, 44, 52, 184
Hpy8I	GTNNAC	1 cut(s)	325
HpyAV	CCTTC	2 cut(s)	249, 370
HpyCH4III	ACNGT	1 cut(s)	329
HpyCH4V	TGCA	3 cut(s)	4, 288, 310
HpyF3I	CTNAG	1 cut(s)	212
Kzo9I	GATC	1 cut(s)	87
LmnI	GCTCC	1 cut(s)	222
LpnPI	CCDG	8 cut(s)	40, 123, 126, 131, 197, 257, 284, 371
Lsp1109I	GCAGC	4 cut(s)	69, 133, 157, 294
LweI	GCATC	1 cut(s)	319
MalI	GATC	1 cut(s)	89
MboI	GATC	1 cut(s)	87
MboII	GAAGA	6 cut(s)	43, 164, 191, 346, 349, 385
MflI	RGATCY	1 cut(s)	87
MlsI	TGGCCA	1 cut(s)	348
MluCI	AATT	1 cut(s)	105
MluNI	TGGCCA	1 cut(s)	348
MnlI	CCTC	5 cut(s)	40, 94, 207, 218, 357
Mox20I	TGGCCA	1 cut(s)	348
MscI	TGGCCA	1 cut(s)	348
Msp20I	TGGCCA	1 cut(s)	348
MspI	CCGG	1 cut(s)	27
MspR9I	CCNGG	2 cut(s)	28, 272
MvaI	CCWGG	1 cut(s)	272
NciI	CCSGG	1 cut(s)	28
NdeII	GATC	1 cut(s)	87
NlaIV	GGNNCC	1 cut(s)	218
NmeAIII	GCCGAG	1 cut(s)	283
PaeR7I	CTCGAG	1 cut(s)	44
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PfeI	GAWTC	1 cut(s)	191
PflFI	GACNNNGTC	1 cut(s)	74
PkrI	GCNGC	5 cut(s)	59, 123, 147, 161, 309
Psp6I	CCWGG	1 cut(s)	270
PspGI	CCWGG	1 cut(s)	270
PspN4I	GGNNCC	1 cut(s)	218
PsuI	RGATCY	1 cut(s)	87
PsyI	GACNNNGTC	1 cut(s)	74
SatI	GCNGC	5 cut(s)	58, 122, 146, 160, 308
Sau3AI	GATC	1 cut(s)	87
ScrFI	CCNGG	2 cut(s)	28, 272
SetI	ASST	5 cut(s)	51, 150, 167, 229, 381
SfaNI	GCATC	1 cut(s)	319
SfcI	CTRYAG	1 cut(s)	328
Sfr274I	CTCGAG	1 cut(s)	44
SlaI	CTCGAG	1 cut(s)	44
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	1 cut(s)	105
SsiI	CCGC	1 cut(s)	160
StyD4I	CCNGG	2 cut(s)	26, 270
StyI	CCWWGG	2 cut(s)	165, 314
TaaI	ACNGT	1 cut(s)	329
TaqI	TCGA	3 cut(s)	45, 51, 69
TasI	AATT	1 cut(s)	105
TauI	GCSGC	1 cut(s)	162
TfiI	GAWTC	1 cut(s)	191
TscAI	CASTG	1 cut(s)	327
TseI	GCWGC	4 cut(s)	57, 121, 145, 307
TspDTI	ATGAA	1 cut(s)	191
TspGWI	ACGGA	1 cut(s)	209
TspRI	CASTG	1 cut(s)	327
Tth111I	GACNNNGTC	1 cut(s)	74
XapI	RAATTY	1 cut(s)	105
XhoI	CTCGAG	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.