Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000048.1

Orthogroup ID

OG0002166

Physical Location & Seq

Genomic Coordinates Forward (+)

65233 .. 66081

Gene Structure 849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000048.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

atgccgtacacggagatagagagcaagagagagacagagattgagaagattcagatctttgtgaaaacggtaaccgggaagaccatcacccttgaggttgaatctagcgacactatcgacaacgcgcgtcaaggccaagatctaggagaaggaaagtatcccccggaccagcagatgctcattttcattgaaaagcagcttaaggatggtcgtactcctgctaattacaacattcagaaagaatcaaccctgcatttggttctgaggcttcgtgatggaattatcgagccttctctcatggcattgactagaaagtataaccaagagaagatgatctaccgtaagtgttatgcactccttcattgcggtgttgtcaattgtagaaagaagtgtggacacaacaaccagctagttgaggtgaaagcagaagatcaagtagacattgattgcgttgggggaatgccatgtctttttacatcattggcttctgcatttgatcccgttcaattaaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L40e ubiquitin

Protein Analysis

171

Amino Acids

19.44

Weight (kDa)

5.96

Isoelectric Point (pI)

51.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36170 AT3G52590
fragaria_vesca	FvH4_6g19302 FvH4_6g19302 FvH4_7g32551
malus_domestica	MD01G1226400.v1.1 MD07G1296800.v1.1 MD12G1028600.v1.1 MD14G1028800.v1.1
prunus_persica	Prupe.2G316400_v2.0.a1 Prupe.7G102800_v2.0.a1
pyrus_communis	pycom01g23500 pycom07g26950 pycom12g02740 pycom14g02690
rosa_chinensis	RchiOBHm_Chr1g0336321 RchiOBHm_Chr1g0382401 RchiOBHm_Chr2g0129851 RchiOBHm_Chr2g0148571 RchiOBHm_Chr2g0162391 RchiOBHm_Chr3g0474431 RchiOBHm_Chr3g0474471 RchiOBHm_Chr3g0485451 RchiOBHm_Chr4g0402971
rosa_multiflora	Rmu_sc0000048.1_g000015 Rmu_sc0009916.1_g000009
rosa_roxburghii	Rroxscaffold_1G00002380 Rroxscaffold_4G00278130
rosa_rugosa	Rorug01G0434100 Rorug03G0140900
rosa_samantha	Rh1AG458800 Rh1BG415100 Rh1CG429200 Rh1DG447200 Rh2BG576000 Rh3AG191600 Rh3AG267800 Rh3BG221100 Rh3BG221300 Rh4CG124000
rosa_wichuraiana	Rw1G041220 Rw3G017490 Rw6G010860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	438
AccII	CGCG	2 cut(s)	125, 127
AciI	CCGC	1 cut(s)	366
AclWI	GGATC	1 cut(s)	491
AfaI	GTAC	2 cut(s)	8, 214
AfiI	CCNNNNNNNGG	1 cut(s)	256
AflII	CTTAAG	1 cut(s)	200
AgsI	TTSAA	3 cut(s)	101, 191, 506
AluBI	AGCT	2 cut(s)	199, 409
AluI	AGCT	2 cut(s)	199, 409
Alw26I	GTCTC	1 cut(s)	26
AlwI	GGATC	1 cut(s)	491
AoxI	GGCC	1 cut(s)	133
ApeKI	GCWGC	1 cut(s)	196
AspLEI	GCGC	1 cut(s)	127
AspS9I	GGNCC	1 cut(s)	166
AsuC2I	CCSGG	2 cut(s)	76, 164
AsuHPI	GGTGA	2 cut(s)	79, 430
AvaII	GGWCC	1 cut(s)	166
BarI	GAAGNNNNNNTAC	2 cut(s)	320, 352
BbsI	GAAGAC	1 cut(s)	86
BbvI	GCAGC	1 cut(s)	208
BccI	CCATC	3 cut(s)	92, 200, 269
BciVI	GTATCC	1 cut(s)	168
BcnI	CCSGG	2 cut(s)	76, 164
BcoDI	GTCTC	1 cut(s)	26
BfaI	CTAG	4 cut(s)	105, 143, 309, 410
BfrI	CTTAAG	1 cut(s)	200
BfuI	GTATCC	1 cut(s)	168
BglII	AGATCT	2 cut(s)	54, 139
BisI	GCNGC	1 cut(s)	197
BlsI	GCNGC	1 cut(s)	198
Bme1390I	CCNGG	2 cut(s)	76, 164
Bme18I	GGWCC	1 cut(s)	166
BmgT120I	GGNCC	1 cut(s)	166
BmrFI	CCNGG	2 cut(s)	76, 164
BmsI	GCATC	1 cut(s)	165
BpiI	GAAGAC	1 cut(s)	86
BpuEI	CTTGAG	1 cut(s)	113
BpuMI	CCSGG	2 cut(s)	76, 164
BsaBI	GATNNNNATC	1 cut(s)	53
BsaJI	CCNNGG	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	1 cut(s)	256
Bse3DI	GCAATG	1 cut(s)	361
Bse8I	GATNNNNATC	1 cut(s)	53
BseDI	CCNNGG	1 cut(s)	162
BseGI	GGATG	1 cut(s)	211
BseJI	GATNNNNATC	1 cut(s)	53
BseLI	CCNNNNNNNGG	1 cut(s)	256
BseMI	GCAATG	1 cut(s)	361
BseMII	CTCAG	1 cut(s)	254
BseXI	GCAGC	1 cut(s)	208
Bsh1236I	CGCG	2 cut(s)	125, 127
BshFI	GGCC	1 cut(s)	135
BsiSI	CCGG	2 cut(s)	75, 164
BslI	CCNNNNNNNGG	1 cut(s)	256
BsmAI	GTCTC	1 cut(s)	26
BsmI	GAATGC	1 cut(s)	465
BsnI	GGCC	1 cut(s)	135
Bsp143I	GATC	5 cut(s)	54, 139, 333, 430, 496
BspACI	CCGC	1 cut(s)	366
BspANI	GGCC	1 cut(s)	135
BspCNI	CTCAG	1 cut(s)	255
BspFNI	CGCG	2 cut(s)	125, 127
BspPI	GGATC	1 cut(s)	491
BspTI	CTTAAG	1 cut(s)	200
BsrDI	GCAATG	1 cut(s)	361
BssECI	CCNNGG	1 cut(s)	162
BssMI	GATC	5 cut(s)	54, 139, 333, 430, 496
Bst4CI	ACNGT	2 cut(s)	70, 341
BstAFI	CTTAAG	1 cut(s)	200
BstDEI	CTNAG	1 cut(s)	263
BstEII	GGTNACC	1 cut(s)	70
BstF5I	GGATG	1 cut(s)	211
BstFNI	CGCG	2 cut(s)	125, 127
BstHHI	GCGC	1 cut(s)	127
BstKTI	GATC	5 cut(s)	57, 142, 336, 433, 499
BstMAI	GTCTC	1 cut(s)	26
BstMBI	GATC	5 cut(s)	54, 139, 333, 430, 496
BstPI	GGTNACC	1 cut(s)	70
BstSCI	CCNGG	2 cut(s)	74, 162
BstUI	CGCG	2 cut(s)	125, 127
BstV1I	GCAGC	1 cut(s)	208
BstV2I	GAAGAC	1 cut(s)	86
BstX2I	RGATCY	2 cut(s)	54, 139
BstYI	RGATCY	2 cut(s)	54, 139
BsuI	GTATCC	1 cut(s)	168
BsuRI	GGCC	1 cut(s)	135
BtsCI	GGATG	1 cut(s)	211
CfoI	GCGC	1 cut(s)	127
Cfr13I	GGNCC	1 cut(s)	166
CseI	GACGC	1 cut(s)	116
Csp6I	GTAC	2 cut(s)	7, 213
CviAII	CATG	2 cut(s)	298, 465
CviJI	RGCY	6 cut(s)	135, 199, 268, 289, 409, 485
CviKI_1	RGCY	6 cut(s)	135, 199, 268, 289, 409, 485
CviQI	GTAC	2 cut(s)	7, 213
DdeI	CTNAG	1 cut(s)	263
DpnI	GATC	5 cut(s)	56, 141, 335, 432, 498
DpnII	GATC	5 cut(s)	54, 139, 333, 430, 496
Eco47I	GGWCC	1 cut(s)	166
Eco91I	GGTNACC	1 cut(s)	70
EcoO65I	GGTNACC	1 cut(s)	70
FaeI	CATG	2 cut(s)	301, 468
FaiI	YATR	4 cut(s)	299, 318, 351, 466
FatI	CATG	2 cut(s)	297, 464
FblI	GTMKAC	1 cut(s)	438
Fnu4HI	GCNGC	1 cut(s)	197
FokI	GGATG	1 cut(s)	218
Fsp4HI	GCNGC	1 cut(s)	197
FspBI	CTAG	4 cut(s)	105, 143, 309, 410
GlaI	GCGC	1 cut(s)	126
GluI	GCNGC	1 cut(s)	197
HaeIII	GGCC	1 cut(s)	135
HapII	CCGG	2 cut(s)	75, 164
HgaI	GACGC	1 cut(s)	116
HhaI	GCGC	1 cut(s)	127
Hin1II	CATG	2 cut(s)	301, 468
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
HinfI	GANTC	3 cut(s)	49, 101, 242
HpaII	CCGG	2 cut(s)	75, 164
HphI	GGTGA	2 cut(s)	79, 430
Hpy166II	GTNNAC	3 cut(s)	9, 395, 439
Hpy188I	TCNGA	3 cut(s)	54, 237, 264
Hpy188III	TCNNGA	1 cut(s)	272
Hpy8I	GTNNAC	3 cut(s)	9, 395, 439
HpyAV	CCTTC	3 cut(s)	143, 300, 368
HpyCH4III	ACNGT	2 cut(s)	70, 341
HpyCH4V	TGCA	3 cut(s)	253, 353, 491
HpyF3I	CTNAG	1 cut(s)	263
Hsp92II	CATG	2 cut(s)	301, 468
HspAI	GCGC	1 cut(s)	125
Kzo9I	GATC	5 cut(s)	54, 139, 333, 430, 496
LpnPI	CCDG	6 cut(s)	88, 177, 182, 231, 263, 419
Lsp1109I	GCAGC	1 cut(s)	208
LweI	GCATC	1 cut(s)	165
MaeI	CTAG	4 cut(s)	105, 143, 309, 410
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	5 cut(s)	56, 141, 335, 432, 498
MboI	GATC	5 cut(s)	54, 139, 333, 430, 496
MboII	GAAGA	4 cut(s)	58, 91, 340, 440
MfeI	CAATTG	1 cut(s)	376
MflI	RGATCY	2 cut(s)	54, 139
MluCI	AATT	4 cut(s)	223, 279, 376, 506
MnlI	CCTC	3 cut(s)	88, 258, 409
MseI	TTAA	2 cut(s)	201, 509
MslI	CAYNNNNRTG	1 cut(s)	366
MspCI	CTTAAG	1 cut(s)	200
MspI	CCGG	2 cut(s)	75, 164
MspR9I	CCNGG	2 cut(s)	76, 164
MunI	CAATTG	1 cut(s)	376
Mva1269I	GAATGC	1 cut(s)	465
MvnI	CGCG	2 cut(s)	125, 127
NciI	CCSGG	2 cut(s)	76, 164
NdeII	GATC	5 cut(s)	54, 139, 333, 430, 496
NlaIII	CATG	2 cut(s)	301, 468
PctI	GAATGC	1 cut(s)	465
PfeI	GAWTC	3 cut(s)	49, 101, 242
PkrI	GCNGC	1 cut(s)	198
PspEI	GGTNACC	1 cut(s)	70
PspPI	GGNCC	1 cut(s)	166
PsuI	RGATCY	2 cut(s)	54, 139
RsaI	GTAC	2 cut(s)	8, 214
RsaNI	GTAC	2 cut(s)	7, 213
RseI	CAYNNNNRTG	1 cut(s)	366
SaqAI	TTAA	2 cut(s)	201, 509
SatI	GCNGC	1 cut(s)	197
Sau3AI	GATC	5 cut(s)	54, 139, 333, 430, 496
Sau96I	GGNCC	1 cut(s)	166
ScrFI	CCNGG	2 cut(s)	76, 164
SetI	ASST	4 cut(s)	99, 201, 411, 420
SfaNI	GCATC	1 cut(s)	165
SinI	GGWCC	1 cut(s)	166
SmiMI	CAYNNNNRTG	1 cut(s)	366
SmlI	CTYRAG	2 cut(s)	92, 200
SmoI	CTYRAG	2 cut(s)	92, 200
Sse9I	AATT	4 cut(s)	223, 279, 376, 506
SsiI	CCGC	1 cut(s)	366
SspMI	CTAG	4 cut(s)	105, 143, 309, 410
StyD4I	CCNGG	2 cut(s)	74, 162
TaaI	ACNGT	2 cut(s)	70, 341
TaqI	TCGA	2 cut(s)	117, 285
TasI	AATT	4 cut(s)	223, 279, 376, 506
TfiI	GAWTC	3 cut(s)	49, 101, 242
Tru1I	TTAA	2 cut(s)	201, 509
Tru9I	TTAA	2 cut(s)	201, 509
TseI	GCWGC	1 cut(s)	196
TspDTI	ATGAA	2 cut(s)	175, 350
TspGWI	ACGGA	1 cut(s)	26
Vha464I	CTTAAG	1 cut(s)	200
VpaK11BI	GGWCC	1 cut(s)	166
XmiI	GTMKAC	1 cut(s)	438
XspI	CTAG	4 cut(s)	105, 143, 309, 410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.