Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002166

Physical Location & Seq

Genomic Coordinates Reverse (-)

11604240 .. 11606719

Gene Structure 2480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0140900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGATCGTCGAGTTCCTTTTTTCGGGATTTTGAGCTCTCAACCGTCAGAAAATCCTGAATGGATCAAAACTTTTCTTTTCTTTTTTTTTTTTTTGGGCAAAGAAAATTCCCAGCACATCTGGGAAGCAATTTTGGTTGAACTCTTGTCAATTGGCTTGTCAAAGTCAAAACAGGCGCTTCTTTCTGGATGCTCAGCCGGCGGGTTGGCAACTCTTATACACTGTGATGACTTTCGAGGTCTTCTACCTAGGGATTCAAGGATTCAACTGTCAAATGTCATGCTGATGCAGGATTTAGCAAAAAGTTTGCACAAGGATTGTGTTGCAAGAAAGGAACCAGCTAAGACAATTGCAGAGTCTGTGGGTGATTGGTACTTTAATCGAACTCTTGCAAAGCAAATTGACTGCCCATTTCCATGCAATCCCACCTGTTATCATATGAATTTCACTCAATTTTCACGAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 ko03320 map03010 map03320

Pfam Domains

Protein Families

Ribosomal_L40e ubiquitin

Protein Analysis

155

Amino Acids

17.62

Weight (kDa)

8.24

Isoelectric Point (pI)

43.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAE	PF03283	38 - 89	1.1e-16	Pectinacetylesterase
PAE	PF03283	114 - 144	4.3e-08	Pectinacetylesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36170 AT3G52590
fragaria_vesca	FvH4_6g19302 FvH4_6g19302 FvH4_7g32551
malus_domestica	MD01G1226400.v1.1 MD07G1296800.v1.1 MD12G1028600.v1.1 MD14G1028800.v1.1
prunus_persica	Prupe.2G316400_v2.0.a1 Prupe.7G102800_v2.0.a1
pyrus_communis	pycom01g23500 pycom07g26950 pycom12g02740 pycom14g02690
rosa_chinensis	RchiOBHm_Chr1g0336321 RchiOBHm_Chr1g0382401 RchiOBHm_Chr2g0129851 RchiOBHm_Chr2g0148571 RchiOBHm_Chr2g0162391 RchiOBHm_Chr3g0474431 RchiOBHm_Chr3g0474471 RchiOBHm_Chr3g0485451 RchiOBHm_Chr4g0402971
rosa_multiflora	Rmu_sc0000048.1_g000015 Rmu_sc0009916.1_g000009
rosa_roxburghii	Rroxscaffold_1G00002380 Rroxscaffold_4G00278130
rosa_rugosa	Rorug01G0434100 Rorug03G0140900
rosa_samantha	Rh1AG458800 Rh1BG415100 Rh1CG429200 Rh1DG447200 Rh2BG576000 Rh3AG191600 Rh3AG267800 Rh3BG221100 Rh3BG221300 Rh4CG124000
rosa_wichuraiana	Rw1G041220 Rw3G017490 Rw6G010860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	201
AclWI	GGATC	2 cut(s)	12, 71
AcsI	RAATTY	2 cut(s)	106, 442
AfaI	GTAC	1 cut(s)	374
AfiI	CCNNNNNNNGG	1 cut(s)	23
AgsI	TTSAA	3 cut(s)	140, 258, 266
AluBI	AGCT	2 cut(s)	36, 341
AluI	AGCT	2 cut(s)	36, 341
Alw21I	GWGCWC	1 cut(s)	38
AlwI	GGATC	2 cut(s)	12, 71
AlwNI	CAGNNNCTG	1 cut(s)	359
ApoI	RAATTY	2 cut(s)	106, 442
AspA2I	CCTAGG	1 cut(s)	248
AspLEI	GCGC	1 cut(s)	178
AsuHPI	GGTGA	1 cut(s)	377
AvrII	CCTAGG	1 cut(s)	248
BanII	GRGCYC	1 cut(s)	38
BauI	CACGAG	1 cut(s)	459
BbsI	GAAGAC	1 cut(s)	233
Bbv12I	GWGCWC	1 cut(s)	38
BfaI	CTAG	1 cut(s)	249
BfoI	RGCGCY	1 cut(s)	179
BlnI	CCTAGG	1 cut(s)	248
BlpI	GCTNAGC	1 cut(s)	193
BmiI	GGNNCC	1 cut(s)	336
BmsI	GCATC	2 cut(s)	179, 276
BpiI	GAAGAC	1 cut(s)	233
Bpu1102I	GCTNAGC	1 cut(s)	193
BsaJI	CCNNGG	1 cut(s)	248
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
Bse118I	RCCGGY	1 cut(s)	197
BseDI	CCNNGG	1 cut(s)	248
BseGI	GGATG	1 cut(s)	194
BseLI	CCNNNNNNNGG	1 cut(s)	23
BseMII	CTCAG	1 cut(s)	207
BseYI	CCCAGC	1 cut(s)	111
BsiHKAI	GWGCWC	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	198
BslI	CCNNNNNNNGG	1 cut(s)	23
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	2 cut(s)	4, 63
Bsp1720I	GCTNAGC	1 cut(s)	193
BspACI	CCGC	1 cut(s)	201
BspCNI	CTCAG	1 cut(s)	206
BspLI	GGNNCC	1 cut(s)	336
BspPI	GGATC	2 cut(s)	12, 71
BsrFI	RCCGGY	1 cut(s)	197
BssAI	RCCGGY	1 cut(s)	197
BssECI	CCNNGG	1 cut(s)	248
BssMI	GATC	2 cut(s)	4, 63
BssSI	CACGAG	1 cut(s)	459
BssT1I	CCWWGG	1 cut(s)	248
Bst2BI	CACGAG	1 cut(s)	459
Bst4CI	ACNGT	3 cut(s)	45, 224, 270
BstC8I	GCNNGC	1 cut(s)	199
BstDEI	CTNAG	2 cut(s)	193, 342
BstF5I	GGATG	1 cut(s)	194
BstH2I	RGCGCY	1 cut(s)	179
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	2 cut(s)	7, 66
BstMBI	GATC	2 cut(s)	4, 63
BstMWI	GCNNNNNNNGC	1 cut(s)	198
BstV2I	GAAGAC	1 cut(s)	233
BtsCI	GGATG	1 cut(s)	194
BtsIMutI	CAGTG	1 cut(s)	220
Cac8I	GCNNGC	1 cut(s)	199
CaiI	CAGNNNCTG	1 cut(s)	359
CfoI	GCGC	1 cut(s)	178
Cfr10I	RCCGGY	1 cut(s)	197
Csp6I	GTAC	1 cut(s)	373
CviAII	CATG	2 cut(s)	280, 417
CviJI	RGCY	4 cut(s)	36, 156, 197, 341
CviKI_1	RGCY	4 cut(s)	36, 156, 197, 341
CviQI	GTAC	1 cut(s)	373
DdeI	CTNAG	2 cut(s)	193, 342
DpnI	GATC	2 cut(s)	6, 65
DpnII	GATC	2 cut(s)	4, 63
Ecl136II	GAGCTC	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	248
Eco24I	GRGCYC	1 cut(s)	38
Eco53kI	GAGCTC	1 cut(s)	36
EcoICRI	GAGCTC	1 cut(s)	36
EcoT14I	CCWWGG	1 cut(s)	248
EcoT38I	GRGCYC	1 cut(s)	38
ErhI	CCWWGG	1 cut(s)	248
FaeI	CATG	2 cut(s)	283, 420
FaiI	YATR	5 cut(s)	218, 281, 418, 438, 440
FatI	CATG	2 cut(s)	279, 416
FauI	CCCGC	1 cut(s)	194
FauNDI	CATATG	1 cut(s)	438
FokI	GGATG	1 cut(s)	201
FriOI	GRGCYC	1 cut(s)	38
FspBI	CTAG	1 cut(s)	249
GlaI	GCGC	1 cut(s)	177
GsaI	CCCAGC	1 cut(s)	115
HaeII	RGCGCY	1 cut(s)	179
HapII	CCGG	1 cut(s)	198
HhaI	GCGC	1 cut(s)	178
Hin1II	CATG	2 cut(s)	283, 420
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HinfI	GANTC	3 cut(s)	254, 262, 356
HpaII	CCGG	1 cut(s)	198
HphI	GGTGA	1 cut(s)	377
Hpy188I	TCNGA	1 cut(s)	49
Hpy188III	TCNNGA	4 cut(s)	25, 56, 186, 459
Hpy99I	CGWCG	1 cut(s)	12
HpyCH4III	ACNGT	3 cut(s)	45, 224, 270
HpyCH4V	TGCA	6 cut(s)	289, 310, 326, 353, 392, 420
HpyF10VI	GCNNNNNNNGC	1 cut(s)	198
HpyF3I	CTNAG	2 cut(s)	193, 342
Hsp92II	CATG	2 cut(s)	283, 420
HspAI	GCGC	1 cut(s)	176
KroI	GCCGGC	1 cut(s)	197
KroNI	GCCGGC	1 cut(s)	199
Kzo9I	GATC	2 cut(s)	4, 63
LpnPI	CCDG	9 cut(s)	69, 106, 125, 158, 171, 211, 275, 351, 442
LweI	GCATC	2 cut(s)	179, 276
MaeI	CTAG	1 cut(s)	249
MalI	GATC	2 cut(s)	6, 65
MboI	GATC	2 cut(s)	4, 63
MboII	GAAGA	1 cut(s)	233
MfeI	CAATTG	2 cut(s)	150, 348
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	7 cut(s)	106, 129, 150, 348, 399, 442, 452
MlyI	GAGTC	1 cut(s)	365
MnlI	CCTC	2 cut(s)	230, 455
MroNI	GCCGGC	1 cut(s)	197
MseI	TTAA	1 cut(s)	378
MslI	CAYNNNNRTG	3 cut(s)	225, 284, 415
MspI	CCGG	1 cut(s)	198
MunI	CAATTG	2 cut(s)	150, 348
MwoI	GCNNNNNNNGC	1 cut(s)	198
NaeI	GCCGGC	1 cut(s)	199
NdeI	CATATG	1 cut(s)	438
NdeII	GATC	2 cut(s)	4, 63
NgoMIV	GCCGGC	1 cut(s)	197
NlaIII	CATG	2 cut(s)	283, 420
NlaIV	GGNNCC	1 cut(s)	336
PdiI	GCCGGC	1 cut(s)	199
PfeI	GAWTC	2 cut(s)	254, 262
PleI	GAGTC	1 cut(s)	364
PpsI	GAGTC	1 cut(s)	364
Psp124BI	GAGCTC	1 cut(s)	38
PspFI	CCCAGC	1 cut(s)	111
PspN4I	GGNNCC	1 cut(s)	336
PstNI	CAGNNNCTG	1 cut(s)	359
RsaI	GTAC	1 cut(s)	374
RsaNI	GTAC	1 cut(s)	373
RseI	CAYNNNNRTG	3 cut(s)	225, 284, 415
SacI	GAGCTC	1 cut(s)	38
SaqAI	TTAA	1 cut(s)	378
Sau3AI	GATC	2 cut(s)	4, 63
SchI	GAGTC	1 cut(s)	365
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	6 cut(s)	38, 241, 250, 343, 431, 466
SfaNI	GCATC	2 cut(s)	179, 276
SmiMI	CAYNNNNRTG	3 cut(s)	225, 284, 415
Sse9I	AATT	7 cut(s)	106, 129, 150, 348, 399, 442, 452
SsiI	CCGC	1 cut(s)	201
SspMI	CTAG	1 cut(s)	249
SstI	GAGCTC	1 cut(s)	38
StyI	CCWWGG	1 cut(s)	248
TaaI	ACNGT	3 cut(s)	45, 224, 270
TaqI	TCGA	3 cut(s)	10, 235, 382
TasI	AATT	7 cut(s)	106, 129, 150, 348, 399, 442, 452
TfiI	GAWTC	2 cut(s)	254, 262
Tru1I	TTAA	1 cut(s)	378
Tru9I	TTAA	1 cut(s)	378
TscAI	CASTG	1 cut(s)	227
TspDTI	ATGAA	1 cut(s)	455
TspRI	CASTG	1 cut(s)	227
XapI	RAATTY	2 cut(s)	106, 442
XmaJI	CCTAGG	1 cut(s)	248
XspI	CTAG	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.