Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002166

Physical Location & Seq

Genomic Coordinates Forward (+)

19505379 .. 19506932

Gene Structure 1554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G52590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGCAGATCTTCGTGAAAACCTTGACCGGCAAGACCATCACTCTCGAGGTCGAGAGCAGCGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATCCCTCCGGATCAGCAGAGATTGATCTTCGCCGGAAAGCAGCTCGAAGATGGCCGTACTTTGGCTGACTACAACATCCAGAAAGAATCTACACTTCATCTTGTGTTGAGGCTTAGAGGAGGTATTATTGAGCCTTCCTTGATGATGCTTGCTCGTAAGTACAATCAGGATAAGATGATTTGCCGCAAGTGCTATGCTCGTCTTCACCCAAGAGCTGTCAACTGCAGGAAGAAGAAGTGTGGTCACAGCAACCAGTTGAGGCCTAAGAAGAAGATCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0015934 GO:0016567 GO:0019538 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0070647 GO:0071704 GO:1901564 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L40e ubiquitin

Protein Analysis

128

Amino Acids

14.73

Weight (kDa)

9.94

Isoelectric Point (pI)

31.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD	PF11976	1 - 71	8.9e-18	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	3 - 74	1.1e-32	Ubiquitin family
Ribosomal_L40e	PF01020	78 - 127	2.2e-31	Ribosomal L40e family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36170 AT3G52590
fragaria_vesca	FvH4_6g19302 FvH4_6g19302 FvH4_7g32551
malus_domestica	MD01G1226400.v1.1 MD07G1296800.v1.1 MD12G1028600.v1.1 MD14G1028800.v1.1
prunus_persica	Prupe.2G316400_v2.0.a1 Prupe.7G102800_v2.0.a1
pyrus_communis	pycom01g23500 pycom07g26950 pycom12g02740 pycom14g02690
rosa_chinensis	RchiOBHm_Chr1g0336321 RchiOBHm_Chr1g0382401 RchiOBHm_Chr2g0129851 RchiOBHm_Chr2g0148571 RchiOBHm_Chr2g0162391 RchiOBHm_Chr3g0474431 RchiOBHm_Chr3g0474471 RchiOBHm_Chr3g0485451 RchiOBHm_Chr4g0402971
rosa_multiflora	Rmu_sc0000048.1_g000015 Rmu_sc0009916.1_g000009
rosa_roxburghii	Rroxscaffold_1G00002380 Rroxscaffold_4G00278130
rosa_rugosa	Rorug01G0434100 Rorug03G0140900
rosa_samantha	Rh1AG458800 Rh1BG415100 Rh1CG429200 Rh1DG447200 Rh2BG576000 Rh3AG191600 Rh3AG267800 Rh3BG221100 Rh3BG221300 Rh4CG124000
rosa_wichuraiana	Rw1G041220 Rw3G017490 Rw6G010860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	112
AciI	CCGC	1 cut(s)	289
AclWI	GGATC	2 cut(s)	82, 123
AcoI	YGGCCR	1 cut(s)	157
AfaI	GTAC	2 cut(s)	163, 266
AfiI	CCNNNNNNNGG	1 cut(s)	166
AluBI	AGCT	2 cut(s)	148, 320
AluI	AGCT	2 cut(s)	148, 320
AlwI	GGATC	2 cut(s)	82, 123
Ama87I	CYCGRG	1 cut(s)	44
Aor13HI	TCCGGA	1 cut(s)	112
AoxI	GGCC	3 cut(s)	81, 157, 365
ApeKI	GCWGC	2 cut(s)	57, 145
AsuHPI	GGTGA	1 cut(s)	302
AvaI	CYCGRG	1 cut(s)	44
BbsI	GAAGAC	1 cut(s)	299
BbvI	GCAGC	2 cut(s)	69, 157
BccI	CCATC	3 cut(s)	44, 74, 149
BceAI	ACGGC	1 cut(s)	144
BfmI	CTRYAG	1 cut(s)	328
BglII	AGATCT	1 cut(s)	6
BisI	GCNGC	3 cut(s)	58, 146, 289
BlsI	GCNGC	3 cut(s)	59, 147, 290
BmeT110I	CYCGRG	1 cut(s)	44
BmsI	GCATC	1 cut(s)	240
BpiI	GAAGAC	1 cut(s)	299
BsaWI	WCCGGW	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
Bse118I	RCCGGY	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	358
BseAI	TCCGGA	1 cut(s)	112
BseGI	GGATG	1 cut(s)	180
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseNI	ACTGG	1 cut(s)	358
BseRI	GAGGAG	1 cut(s)	237
BseXI	GCAGC	2 cut(s)	69, 157
BshFI	GGCC	3 cut(s)	83, 159, 367
BsiHKCI	CYCGRG	1 cut(s)	44
BsiSI	CCGG	3 cut(s)	27, 113, 138
BslI	CCNNNNNNNGG	1 cut(s)	166
BsnI	GGCC	3 cut(s)	83, 159, 367
BsoBI	CYCGRG	1 cut(s)	44
Bsp13I	TCCGGA	1 cut(s)	112
Bsp143I	GATC	5 cut(s)	6, 87, 115, 129, 378
BspACI	CCGC	1 cut(s)	289
BspANI	GGCC	3 cut(s)	83, 159, 367
BspEI	TCCGGA	1 cut(s)	112
BspMAI	CTGCAG	1 cut(s)	332
BspPI	GGATC	2 cut(s)	82, 123
BsrFI	RCCGGY	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	358
BssAI	RCCGGY	1 cut(s)	26
BssMI	GATC	5 cut(s)	6, 87, 115, 129, 378
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	2 cut(s)	218, 369
BstF5I	GGATG	1 cut(s)	180
BstKTI	GATC	5 cut(s)	9, 90, 118, 132, 381
BstMBI	GATC	5 cut(s)	6, 87, 115, 129, 378
BstMWI	GCNNNNNNNGC	1 cut(s)	294
BstSFI	CTRYAG	1 cut(s)	328
BstV1I	GCAGC	2 cut(s)	69, 157
BstV2I	GAAGAC	1 cut(s)	299
BstX2I	RGATCY	2 cut(s)	6, 87
BstYI	RGATCY	2 cut(s)	6, 87
BsuRI	GGCC	3 cut(s)	83, 159, 367
BtsCI	GGATG	1 cut(s)	180
Cac8I	GCNNGC	1 cut(s)	255
Cfr10I	RCCGGY	1 cut(s)	26
Csp6I	GTAC	2 cut(s)	162, 265
CviJI	RGCY	8 cut(s)	83, 148, 159, 170, 217, 238, 320, 367
CviKI_1	RGCY	8 cut(s)	83, 148, 159, 170, 217, 238, 320, 367
CviQI	GTAC	2 cut(s)	162, 265
DdeI	CTNAG	2 cut(s)	218, 369
DpnI	GATC	5 cut(s)	8, 89, 117, 131, 380
DpnII	GATC	5 cut(s)	6, 87, 115, 129, 378
EaeI	YGGCCR	1 cut(s)	157
Eco147I	AGGCCT	1 cut(s)	367
Eco88I	CYCGRG	1 cut(s)	44
FaiI	YATR	1 cut(s)	300
Fnu4HI	GCNGC	3 cut(s)	58, 146, 289
FokI	GGATG	1 cut(s)	167
Fsp4HI	GCNGC	3 cut(s)	58, 146, 289
GluI	GCNGC	3 cut(s)	58, 146, 289
HaeIII	GGCC	3 cut(s)	83, 159, 367
HapII	CCGG	3 cut(s)	27, 113, 138
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HinfI	GANTC	2 cut(s)	105, 191
HpaII	CCGG	3 cut(s)	27, 113, 138
HphI	GGTGA	1 cut(s)	302
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188III	TCNNGA	6 cut(s)	13, 44, 52, 113, 184, 272
Hpy8I	GTNNAC	1 cut(s)	325
HpyAV	CCTTC	2 cut(s)	95, 249
HpyCH4V	TGCA	2 cut(s)	4, 330
HpyF10VI	GCNNNNNNNGC	1 cut(s)	294
HpyF3I	CTNAG	2 cut(s)	218, 369
Kpn2I	TCCGGA	1 cut(s)	112
Kzo9I	GATC	5 cut(s)	6, 87, 115, 129, 378
LpnPI	CCDG	7 cut(s)	40, 126, 151, 197, 257, 316, 371
Lsp1109I	GCAGC	2 cut(s)	69, 157
LweI	GCATC	1 cut(s)	240
MaeIII	GTNAC	1 cut(s)	347
MalI	GATC	5 cut(s)	8, 89, 117, 131, 380
MboI	GATC	5 cut(s)	6, 87, 115, 129, 378
MboII	GAAGA	6 cut(s)	124, 164, 299, 346, 349, 385
MflI	RGATCY	2 cut(s)	6, 87
MnlI	CCTC	6 cut(s)	40, 120, 207, 215, 218, 357
MroI	TCCGGA	1 cut(s)	112
MspI	CCGG	3 cut(s)	27, 113, 138
MwoI	GCNNNNNNNGC	1 cut(s)	294
NdeII	GATC	5 cut(s)	6, 87, 115, 129, 378
NmuCI	GTSAC	1 cut(s)	347
PaeR7I	CTCGAG	1 cut(s)	44
PceI	AGGCCT	1 cut(s)	367
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PfeI	GAWTC	2 cut(s)	105, 191
PflFI	GACNNNGTC	1 cut(s)	74
PkrI	GCNGC	3 cut(s)	59, 147, 290
PstI	CTGCAG	1 cut(s)	332
PsuI	RGATCY	2 cut(s)	6, 87
PsyI	GACNNNGTC	1 cut(s)	74
RsaI	GTAC	2 cut(s)	163, 266
RsaNI	GTAC	2 cut(s)	162, 265
SatI	GCNGC	3 cut(s)	58, 146, 289
Sau3AI	GATC	5 cut(s)	6, 87, 115, 129, 378
SetI	ASST	5 cut(s)	23, 51, 150, 229, 322
SfaNI	GCATC	1 cut(s)	240
SfcI	CTRYAG	1 cut(s)	328
Sfr274I	CTCGAG	1 cut(s)	44
SlaI	CTCGAG	1 cut(s)	44
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
SseBI	AGGCCT	1 cut(s)	367
SsiI	CCGC	1 cut(s)	289
StuI	AGGCCT	1 cut(s)	367
TaqI	TCGA	4 cut(s)	45, 51, 69, 150
TatI	WGTACW	1 cut(s)	264
TauI	GCSGC	1 cut(s)	291
TfiI	GAWTC	2 cut(s)	105, 191
TseFI	GTSAC	1 cut(s)	347
TseI	GCWGC	2 cut(s)	57, 145
Tsp45I	GTSAC	1 cut(s)	347
TspDTI	ATGAA	1 cut(s)	191
Tth111I	GACNNNGTC	1 cut(s)	74
XhoI	CTCGAG	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.