Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002166

Physical Location & Seq

Genomic Coordinates Reverse (-)

12845969 .. 12848516

Gene Structure 2548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g19302.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGCAGATATTCGTGAAAACCCTAACGGGGAAGACCATCACTCTCGAGGTGGAGAGCAGCGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCTGATCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCTTGGCCGACTACAACATCCAGAAAGAGTCGACTCTTCATTTGGTGCTGAGGCTTCGCGGAGGGATCATTGAACCTTCATTGATGGCTTTGGCTCGCAAGTACAATCAGGAGAAGATGATTTGCAGAAAATGTTATGCTCGTCTCCACCCAAGGGCAGTCAACTGTAGGAAGAAGAAGTGTGGCCACAGCAACCAGTTGAGGCCAAAGAAGAAGATCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 ko03320 map03010 map03320

Pfam Domains

Protein Families

Ribosomal_L40e ubiquitin

Protein Analysis

129

Amino Acids

14.69

Weight (kDa)

9.94

Isoelectric Point (pI)

33.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD	PF11976	1 - 71	6.1e-18	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	3 - 74	7.6e-33	Ubiquitin family
Ribosomal_L40e	PF01020	78 - 105	2.8e-11	Ribosomal L40e family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36170 AT3G52590
fragaria_vesca	FvH4_6g19302 FvH4_6g19302 FvH4_7g32551
malus_domestica	MD01G1226400.v1.1 MD07G1296800.v1.1 MD12G1028600.v1.1 MD14G1028800.v1.1
prunus_persica	Prupe.2G316400_v2.0.a1 Prupe.7G102800_v2.0.a1
pyrus_communis	pycom01g23500 pycom07g26950 pycom12g02740 pycom14g02690
rosa_chinensis	RchiOBHm_Chr1g0336321 RchiOBHm_Chr1g0382401 RchiOBHm_Chr2g0129851 RchiOBHm_Chr2g0148571 RchiOBHm_Chr2g0162391 RchiOBHm_Chr3g0474431 RchiOBHm_Chr3g0474471 RchiOBHm_Chr3g0485451 RchiOBHm_Chr4g0402971
rosa_multiflora	Rmu_sc0000048.1_g000015 Rmu_sc0009916.1_g000009
rosa_roxburghii	Rroxscaffold_1G00002380 Rroxscaffold_4G00278130
rosa_rugosa	Rorug01G0434100 Rorug03G0140900
rosa_samantha	Rh1AG458800 Rh1BG415100 Rh1CG429200 Rh1DG447200 Rh2BG576000 Rh3AG191600 Rh3AG267800 Rh3BG221100 Rh3BG221300 Rh4CG124000
rosa_wichuraiana	Rw1G041220 Rw3G017490 Rw6G010860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	194
AccII	CGCG	1 cut(s)	222
AciI	CCGC	2 cut(s)	160, 222
AclWI	GGATC	2 cut(s)	82, 236
AcoI	YGGCCR	3 cut(s)	157, 168, 346
AfaI	GTAC	1 cut(s)	266
AfiI	CCNNNNNNNGG	4 cut(s)	27, 97, 166, 316
AgsI	TTSAA	1 cut(s)	236
AluBI	AGCT	1 cut(s)	148
AluI	AGCT	1 cut(s)	148
Alw26I	GTCTC	2 cut(s)	131, 311
AlwI	GGATC	2 cut(s)	82, 236
Ama87I	CYCGRG	2 cut(s)	44, 149
AoxI	GGCC	5 cut(s)	81, 157, 168, 346, 365
ApeKI	GCWGC	3 cut(s)	57, 121, 145
ArsI	GACNNNNNNTTYG	2 cut(s)	187, 219
AvaI	CYCGRG	2 cut(s)	44, 149
BalI	TGGCCA	1 cut(s)	348
BbsI	GAAGAC	1 cut(s)	38
BbvCI	CCTCAGC	1 cut(s)	212
BbvI	GCAGC	3 cut(s)	69, 133, 157
BccI	CCATC	3 cut(s)	44, 74, 241
BceAI	ACGGC	1 cut(s)	172
BclI	TGATCA	1 cut(s)	115
BcoDI	GTCTC	2 cut(s)	131, 311
BfmI	CTRYAG	1 cut(s)	328
BisI	GCNGC	4 cut(s)	58, 122, 146, 160
BlsI	GCNGC	4 cut(s)	59, 123, 147, 161
BmeT110I	CYCGRG	2 cut(s)	44, 149
BmsI	GCATC	1 cut(s)	114
BpiI	GAAGAC	1 cut(s)	38
Bpu10I	CCTNAGC	1 cut(s)	212
BsaJI	CCNNGG	2 cut(s)	165, 314
Bsc4I	CCNNNNNNNGG	4 cut(s)	27, 97, 166, 316
Bse1I	ACTGG	1 cut(s)	358
BseDI	CCNNGG	2 cut(s)	165, 314
BseGI	GGATG	2 cut(s)	105, 180
BseLI	CCNNNNNNNGG	4 cut(s)	27, 97, 166, 316
BseMII	CTCAG	1 cut(s)	203
BseNI	ACTGG	1 cut(s)	358
BseX3I	CGGCCG	1 cut(s)	157
BseXI	GCAGC	3 cut(s)	69, 133, 157
Bsh1236I	CGCG	1 cut(s)	222
Bsh1285I	CGRYCG	1 cut(s)	160
BshFI	GGCC	5 cut(s)	83, 159, 170, 348, 367
BsiEI	CGRYCG	1 cut(s)	160
BsiHKCI	CYCGRG	2 cut(s)	44, 149
BsiSI	CCGG	1 cut(s)	138
BslI	CCNNNNNNNGG	4 cut(s)	27, 97, 166, 316
BsmAI	GTCTC	2 cut(s)	131, 311
BsmBI	CGTCTC	2 cut(s)	131, 311
BsnI	GGCC	5 cut(s)	83, 159, 170, 348, 367
BsoBI	CYCGRG	2 cut(s)	44, 149
Bsp143I	GATC	4 cut(s)	87, 115, 228, 378
BspACI	CCGC	2 cut(s)	160, 222
BspANI	GGCC	5 cut(s)	83, 159, 170, 348, 367
BspCNI	CTCAG	1 cut(s)	204
BspFNI	CGCG	1 cut(s)	222
BspPI	GGATC	2 cut(s)	82, 236
BsrI	ACTGG	1 cut(s)	358
BssECI	CCNNGG	2 cut(s)	165, 314
BssMI	GATC	4 cut(s)	87, 115, 228, 378
BssT1I	CCWWGG	2 cut(s)	165, 314
Bst4CI	ACNGT	1 cut(s)	329
Bst6I	CTCTTC	1 cut(s)	204
BstC8I	GCNNGC	1 cut(s)	259
BstDEI	CTNAG	1 cut(s)	212
BstF5I	GGATG	2 cut(s)	105, 180
BstFNI	CGCG	1 cut(s)	222
BstKTI	GATC	4 cut(s)	90, 118, 231, 381
BstMAI	GTCTC	2 cut(s)	131, 311
BstMBI	GATC	4 cut(s)	87, 115, 228, 378
BstMCI	CGRYCG	1 cut(s)	160
BstSFI	CTRYAG	1 cut(s)	328
BstUI	CGCG	1 cut(s)	222
BstV1I	GCAGC	3 cut(s)	69, 133, 157
BstV2I	GAAGAC	1 cut(s)	38
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
BstZI	CGGCCG	1 cut(s)	157
BsuRI	GGCC	5 cut(s)	83, 159, 170, 348, 367
BtsCI	GGATG	2 cut(s)	105, 180
Cac8I	GCNNGC	1 cut(s)	259
CseI	GACGC	1 cut(s)	113
Csp6I	GTAC	1 cut(s)	265
CviJI	RGCY	9 cut(s)	83, 148, 159, 170, 217, 251, 257, 348, 367
CviKI_1	RGCY	9 cut(s)	83, 148, 159, 170, 217, 251, 257, 348, 367
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	1 cut(s)	212
DpnI	GATC	4 cut(s)	89, 117, 230, 380
DpnII	GATC	4 cut(s)	87, 115, 228, 378
EaeI	YGGCCR	3 cut(s)	157, 168, 346
EagI	CGGCCG	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
EclXI	CGGCCG	1 cut(s)	157
Eco130I	CCWWGG	2 cut(s)	165, 314
Eco52I	CGGCCG	1 cut(s)	157
Eco88I	CYCGRG	2 cut(s)	44, 149
EcoT14I	CCWWGG	2 cut(s)	165, 314
ErhI	CCWWGG	2 cut(s)	165, 314
Esp3I	CGTCTC	2 cut(s)	131, 311
FaiI	YATR	1 cut(s)	300
FbaI	TGATCA	1 cut(s)	115
FblI	GTMKAC	1 cut(s)	194
Fnu4HI	GCNGC	4 cut(s)	58, 122, 146, 160
FokI	GGATG	2 cut(s)	92, 167
Fsp4HI	GCNGC	4 cut(s)	58, 122, 146, 160
GluI	GCNGC	4 cut(s)	58, 122, 146, 160
HaeIII	GGCC	5 cut(s)	83, 159, 170, 348, 367
HapII	CCGG	1 cut(s)	138
HgaI	GACGC	1 cut(s)	113
HincII	GTYRAC	2 cut(s)	195, 325
HindII	GTYRAC	2 cut(s)	195, 325
HinfI	GANTC	2 cut(s)	191, 196
HpaII	CCGG	1 cut(s)	138
Hpy166II	GTNNAC	2 cut(s)	195, 325
Hpy188III	TCNNGA	5 cut(s)	13, 44, 113, 184, 272
Hpy8I	GTNNAC	2 cut(s)	195, 325
HpyAV	CCTTC	2 cut(s)	95, 249
HpyCH4III	ACNGT	1 cut(s)	329
HpyCH4V	TGCA	2 cut(s)	4, 288
HpyF3I	CTNAG	1 cut(s)	212
Ksp22I	TGATCA	1 cut(s)	115
Kzo9I	GATC	4 cut(s)	87, 115, 228, 378
LpnPI	CCDG	5 cut(s)	126, 151, 197, 257, 371
Lsp1109I	GCAGC	3 cut(s)	69, 133, 157
LweI	GCATC	1 cut(s)	114
MalI	GATC	4 cut(s)	89, 117, 230, 380
MboI	GATC	4 cut(s)	87, 115, 228, 378
MboII	GAAGA	7 cut(s)	43, 124, 191, 289, 346, 349, 385
MflI	RGATCY	1 cut(s)	87
MlsI	TGGCCA	1 cut(s)	348
MluNI	TGGCCA	1 cut(s)	348
MlyI	GAGTC	2 cut(s)	190, 200
MnlI	CCTC	6 cut(s)	40, 120, 145, 207, 218, 357
Mox20I	TGGCCA	1 cut(s)	348
MscI	TGGCCA	1 cut(s)	348
Msp20I	TGGCCA	1 cut(s)	348
MspI	CCGG	1 cut(s)	138
MvnI	CGCG	1 cut(s)	222
NdeII	GATC	4 cut(s)	87, 115, 228, 378
PaeR7I	CTCGAG	2 cut(s)	44, 149
PflFI	GACNNNGTC	1 cut(s)	74
PkrI	GCNGC	4 cut(s)	59, 123, 147, 161
PleI	GAGTC	2 cut(s)	190, 199
PpsI	GAGTC	2 cut(s)	190, 199
PspXI	VCTCGAGB	1 cut(s)	149
PsuI	RGATCY	1 cut(s)	87
PsyI	GACNNNGTC	1 cut(s)	74
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
SalI	GTCGAC	1 cut(s)	193
SatI	GCNGC	4 cut(s)	58, 122, 146, 160
Sau3AI	GATC	4 cut(s)	87, 115, 228, 378
SchI	GAGTC	2 cut(s)	190, 200
SetI	ASST	4 cut(s)	51, 150, 167, 241
SfaNI	GCATC	1 cut(s)	114
SfcI	CTRYAG	1 cut(s)	328
Sfr274I	CTCGAG	2 cut(s)	44, 149
SlaI	CTCGAG	2 cut(s)	44, 149
SmlI	CTYRAG	2 cut(s)	44, 149
SmoI	CTYRAG	2 cut(s)	44, 149
SsiI	CCGC	2 cut(s)	160, 222
StyI	CCWWGG	2 cut(s)	165, 314
TaaI	ACNGT	1 cut(s)	329
TaqI	TCGA	4 cut(s)	45, 69, 150, 194
TatI	WGTACW	1 cut(s)	264
TauI	GCSGC	1 cut(s)	162
TseI	GCWGC	3 cut(s)	57, 121, 145
TspDTI	ATGAA	2 cut(s)	191, 231
Tth111I	GACNNNGTC	1 cut(s)	74
XhoI	CTCGAG	2 cut(s)	44, 149
XmiI	GTMKAC	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.