Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002166

Physical Location & Seq

Genomic Coordinates Reverse (-)

78095403 .. 78096117

Gene Structure 715 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53067

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGTATGTCATTGTTGGTTTAAGTTATGATCCATACACGGAGATAGAGAGCAAGAGAGAGACAGAGCTTGAGAAGATTCAGATCTTTGTGAAAACGGTAACCGAGAAGACCATCACCCTTGAGGTTGAATCTAGCGACACTATCGACAACGCGCGTCAAGGCCAAGATCCAGGAGAAGGAGAGTATCCCCCCCCGGACCAGCAGATGCTCATTTTCATCGGAAAGCAGCTCGAGGATGGTCTTACTCCTGCTAATTACAACATTCAGAAAGAATCAACTCTGCATTTGGTTCTGAGGCTTTGTGGTGGTATTATCGAGCCTTCTCTCATGGCATTGACTAGAAAGTATAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L40e ubiquitin

Protein Analysis

117

Amino Acids

13.25

Weight (kDa)

4.57

Isoelectric Point (pI)

54.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD	PF11976	26 - 98	2e-06	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	28 - 100	8.5e-18	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36170 AT3G52590
fragaria_vesca	FvH4_6g19302 FvH4_6g19302 FvH4_7g32551
malus_domestica	MD01G1226400.v1.1 MD07G1296800.v1.1 MD12G1028600.v1.1 MD14G1028800.v1.1
prunus_persica	Prupe.2G316400_v2.0.a1 Prupe.7G102800_v2.0.a1
pyrus_communis	pycom01g23500 pycom07g26950 pycom12g02740 pycom14g02690
rosa_chinensis	RchiOBHm_Chr1g0336321 RchiOBHm_Chr1g0382401 RchiOBHm_Chr2g0129851 RchiOBHm_Chr2g0148571 RchiOBHm_Chr2g0162391 RchiOBHm_Chr3g0474431 RchiOBHm_Chr3g0474471 RchiOBHm_Chr3g0485451 RchiOBHm_Chr4g0402971
rosa_multiflora	Rmu_sc0000048.1_g000015 Rmu_sc0009916.1_g000009
rosa_roxburghii	Rroxscaffold_1G00002380 Rroxscaffold_4G00278130
rosa_rugosa	Rorug01G0434100 Rorug03G0140900
rosa_samantha	Rh1AG458800 Rh1BG415100 Rh1CG429200 Rh1DG447200 Rh2BG576000 Rh3AG191600 Rh3AG267800 Rh3BG221100 Rh3BG221300 Rh4CG124000
rosa_wichuraiana	Rw1G041220 Rw3G017490 Rw6G010860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	152, 154
AclWI	GGATC	2 cut(s)	23, 161
AfiI	CCNNNNNNNGG	1 cut(s)	176
AgsI	TTSAA	1 cut(s)	128
AjnI	CCWGG	1 cut(s)	169
AluBI	AGCT	2 cut(s)	67, 229
AluI	AGCT	2 cut(s)	67, 229
Alw26I	GTCTC	1 cut(s)	53
AlwI	GGATC	2 cut(s)	23, 161
Ama87I	CYCGRG	1 cut(s)	230
AoxI	GGCC	1 cut(s)	160
ApeKI	GCWGC	1 cut(s)	226
AspLEI	GCGC	1 cut(s)	154
AspS9I	GGNCC	1 cut(s)	196
AsuC2I	CCSGG	1 cut(s)	194
AsuHPI	GGTGA	1 cut(s)	106
AvaI	CYCGRG	1 cut(s)	230
AvaII	GGWCC	1 cut(s)	196
BbsI	GAAGAC	1 cut(s)	113
BbvI	GCAGC	1 cut(s)	238
BccI	CCATC	2 cut(s)	119, 230
BciT130I	CCWGG	1 cut(s)	171
BciVI	GTATCC	1 cut(s)	195
BcnI	CCSGG	1 cut(s)	194
BcoDI	GTCTC	1 cut(s)	53
BfaI	CTAG	2 cut(s)	132, 339
BfuI	GTATCC	1 cut(s)	195
BglII	AGATCT	1 cut(s)	81
BisI	GCNGC	1 cut(s)	227
BlsI	GCNGC	1 cut(s)	228
Bme1390I	CCNGG	2 cut(s)	171, 194
Bme18I	GGWCC	1 cut(s)	196
BmeT110I	CYCGRG	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	196
BmrFI	CCNGG	2 cut(s)	171, 194
BmsI	GCATC	1 cut(s)	195
BpiI	GAAGAC	1 cut(s)	113
BpuEI	CTTGAG	2 cut(s)	89, 140
BpuMI	CCSGG	1 cut(s)	194
BsaBI	GATNNNNATC	1 cut(s)	80
BsaJI	CCNNGG	1 cut(s)	192
Bsc4I	CCNNNNNNNGG	1 cut(s)	176
Bse8I	GATNNNNATC	1 cut(s)	80
BseBI	CCWGG	1 cut(s)	171
BseDI	CCNNGG	1 cut(s)	192
BseGI	GGATG	1 cut(s)	241
BseJI	GATNNNNATC	1 cut(s)	80
BseLI	CCNNNNNNNGG	1 cut(s)	176
BseMII	CTCAG	1 cut(s)	284
BseXI	GCAGC	1 cut(s)	238
Bsh1236I	CGCG	2 cut(s)	152, 154
BshFI	GGCC	1 cut(s)	162
BsiHKCI	CYCGRG	1 cut(s)	230
BsiSI	CCGG	1 cut(s)	194
BslI	CCNNNNNNNGG	1 cut(s)	176
BsmAI	GTCTC	1 cut(s)	53
BsnI	GGCC	1 cut(s)	162
BsoBI	CYCGRG	1 cut(s)	230
Bsp143I	GATC	3 cut(s)	28, 81, 166
BspANI	GGCC	1 cut(s)	162
BspCNI	CTCAG	1 cut(s)	285
BspFNI	CGCG	2 cut(s)	152, 154
BspPI	GGATC	2 cut(s)	23, 161
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	3 cut(s)	28, 81, 166
Bst2UI	CCWGG	1 cut(s)	171
Bst4CI	ACNGT	1 cut(s)	97
BstDEI	CTNAG	1 cut(s)	293
BstEII	GGTNACC	1 cut(s)	97
BstF5I	GGATG	1 cut(s)	241
BstFNI	CGCG	2 cut(s)	152, 154
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	3 cut(s)	31, 84, 169
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	3 cut(s)	28, 81, 166
BstNI	CCWGG	1 cut(s)	171
BstPI	GGTNACC	1 cut(s)	97
BstSCI	CCNGG	2 cut(s)	169, 192
BstUI	CGCG	2 cut(s)	152, 154
BstV1I	GCAGC	1 cut(s)	238
BstV2I	GAAGAC	1 cut(s)	113
BstX2I	RGATCY	2 cut(s)	81, 166
BstYI	RGATCY	2 cut(s)	81, 166
BsuI	GTATCC	1 cut(s)	195
BsuRI	GGCC	1 cut(s)	162
BtsCI	GGATG	1 cut(s)	241
CfoI	GCGC	1 cut(s)	154
Cfr13I	GGNCC	1 cut(s)	196
CseI	GACGC	1 cut(s)	143
CviAII	CATG	1 cut(s)	328
CviJI	RGCY	5 cut(s)	67, 162, 229, 298, 319
CviKI_1	RGCY	5 cut(s)	67, 162, 229, 298, 319
DdeI	CTNAG	1 cut(s)	293
DpnI	GATC	3 cut(s)	30, 83, 168
DpnII	GATC	3 cut(s)	28, 81, 166
Eco47I	GGWCC	1 cut(s)	196
Eco88I	CYCGRG	1 cut(s)	230
Eco91I	GGTNACC	1 cut(s)	97
EcoO65I	GGTNACC	1 cut(s)	97
EcoRII	CCWGG	1 cut(s)	169
FaeI	CATG	1 cut(s)	331
FaiI	YATR	5 cut(s)	6, 27, 34, 329, 348
FatI	CATG	1 cut(s)	327
Fnu4HI	GCNGC	1 cut(s)	227
FokI	GGATG	1 cut(s)	248
Fsp4HI	GCNGC	1 cut(s)	227
FspBI	CTAG	2 cut(s)	132, 339
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	1 cut(s)	227
HaeIII	GGCC	1 cut(s)	162
HapII	CCGG	1 cut(s)	194
HgaI	GACGC	1 cut(s)	143
HhaI	GCGC	1 cut(s)	154
Hin1II	CATG	1 cut(s)	331
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HinfI	GANTC	3 cut(s)	76, 128, 272
HpaII	CCGG	1 cut(s)	194
HphI	GGTGA	1 cut(s)	106
Hpy188I	TCNGA	4 cut(s)	81, 221, 267, 294
HpyAV	CCTTC	2 cut(s)	170, 330
HpyCH4III	ACNGT	1 cut(s)	97
HpyCH4V	TGCA	1 cut(s)	283
HpyF3I	CTNAG	1 cut(s)	293
Hsp92II	CATG	1 cut(s)	331
HspAI	GCGC	1 cut(s)	152
Kzo9I	GATC	3 cut(s)	28, 81, 166
LpnPI	CCDG	5 cut(s)	156, 183, 207, 212, 261
Lsp1109I	GCAGC	1 cut(s)	238
LweI	GCATC	1 cut(s)	195
MaeI	CTAG	2 cut(s)	132, 339
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	3 cut(s)	30, 83, 168
MboI	GATC	3 cut(s)	28, 81, 166
MboII	GAAGA	2 cut(s)	85, 118
MflI	RGATCY	2 cut(s)	81, 166
MluCI	AATT	1 cut(s)	253
MnlI	CCTC	3 cut(s)	115, 226, 288
MseI	TTAA	1 cut(s)	20
MspI	CCGG	1 cut(s)	194
MspR9I	CCNGG	2 cut(s)	171, 194
MvaI	CCWGG	1 cut(s)	171
MvnI	CGCG	2 cut(s)	152, 154
NciI	CCSGG	1 cut(s)	194
NdeII	GATC	3 cut(s)	28, 81, 166
NlaIII	CATG	1 cut(s)	331
PaeR7I	CTCGAG	1 cut(s)	230
PfeI	GAWTC	3 cut(s)	76, 128, 272
PfoI	TCCNGGA	1 cut(s)	169
PkrI	GCNGC	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	169
PspEI	GGTNACC	1 cut(s)	97
PspGI	CCWGG	1 cut(s)	169
PspPI	GGNCC	1 cut(s)	196
PspXI	VCTCGAGB	1 cut(s)	230
PsuI	RGATCY	2 cut(s)	81, 166
SaqAI	TTAA	1 cut(s)	20
SatI	GCNGC	1 cut(s)	227
Sau3AI	GATC	3 cut(s)	28, 81, 166
Sau96I	GGNCC	1 cut(s)	196
ScrFI	CCNGG	2 cut(s)	171, 194
SetI	ASST	3 cut(s)	69, 126, 231
SfaNI	GCATC	1 cut(s)	195
Sfr274I	CTCGAG	1 cut(s)	230
SinI	GGWCC	1 cut(s)	196
SlaI	CTCGAG	1 cut(s)	230
SmlI	CTYRAG	3 cut(s)	68, 119, 230
SmoI	CTYRAG	3 cut(s)	68, 119, 230
Sse9I	AATT	1 cut(s)	253
SspMI	CTAG	2 cut(s)	132, 339
StyD4I	CCNGG	2 cut(s)	169, 192
TaaI	ACNGT	1 cut(s)	97
TaqI	TCGA	3 cut(s)	144, 231, 315
TasI	AATT	1 cut(s)	253
TfiI	GAWTC	3 cut(s)	76, 128, 272
Tru1I	TTAA	1 cut(s)	20
Tru9I	TTAA	1 cut(s)	20
TseI	GCWGC	1 cut(s)	226
TspDTI	ATGAA	1 cut(s)	205
TspGWI	ACGGA	1 cut(s)	53
VpaK11BI	GGWCC	1 cut(s)	196
XhoI	CTCGAG	1 cut(s)	230
XspI	CTAG	2 cut(s)	132, 339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.