RchiOBHm_Chr2g0129851

structural constituent of ribosome

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002166
Physical Location & Seq
Reverse (-)
45758610 .. 45761892
3283 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50145

Sequence Viewer

Length: 417 bp
ATGCAGATTTTCGTGAAAACCCTAACGGGGAAGACCATCACTCTCGAGGTCGAGAGCAGCGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCCCCGGACCAGCAGCGTTTGATTTTTGCCGGAAAGCAGCTCAAAGACGGCCGCACCTTGGCCGACTACAACATCCAGAAAGTCGACTCTTCATCTGGTGCTGAGGCTCCGTGGAGGTATCATCGAGCCTTCTTTGATGGCCTTGGCTACAATCAGGAGAAGATGATTTGCAGAAAATGTTATGCTCGTCTGCACCCAAGGGCTGTCAACTGTAGGAAGAAGAAGTGTGGCCACAACAATCAAGTACAATTTTATAACTTATTGCTGCGGAGGAAGCAGTACTACTTTAAGACTATGGTCTCGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L40e ubiquitin

Protein Analysis

138

Amino Acids

16.02

Weight (kDa)

9.72

Isoelectric Point (pI)

30.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 1 - 65 8.2e-15 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 3 - 63 6.1e-27 Ubiquitin family
Ribosomal_L40e PF01020 86 - 119 2.3e-19 Ribosomal L40e family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 363
AccI GTMKAC 1 cut(s) 192
AciI CCGC 2 cut(s) 160, 376
AclWI GGATC 1 cut(s) 82
AcoI YGGCCR 3 cut(s) 157, 168, 337
AfaI GTAC 2 cut(s) 354, 389
AfiI CCNNNNNNNGG 3 cut(s) 27, 97, 166
AluBI AGCT 1 cut(s) 148
AluI AGCT 1 cut(s) 148
Alw26I GTCTC 1 cut(s) 412
AlwI GGATC 1 cut(s) 82
Ama87I CYCGRG 1 cut(s) 44
AoxI GGCC 5 cut(s) 81, 157, 168, 247, 337
ApeKI GCWGC 4 cut(s) 57, 121, 145, 373
Asp700I GAANNNNTTC 1 cut(s) 105
AspS9I GGNCC 1 cut(s) 115
AsuC2I CCSGG 1 cut(s) 113
AvaI CYCGRG 1 cut(s) 44
AvaII GGWCC 1 cut(s) 115
BalI TGGCCA 1 cut(s) 339
BarI GAAGNNNNNNTAC 2 cut(s) 374, 406
BbsI GAAGAC 1 cut(s) 38
BbvCI CCTCAGC 1 cut(s) 210
BbvI GCAGC 4 cut(s) 69, 133, 157, 360
BccI CCATC 3 cut(s) 44, 74, 239
BceAI ACGGC 1 cut(s) 172
BcnI CCSGG 1 cut(s) 113
BcoDI GTCTC 1 cut(s) 412
BfmI CTRYAG 1 cut(s) 319
BisI GCNGC 5 cut(s) 58, 122, 146, 160, 374
BlsI GCNGC 5 cut(s) 59, 123, 147, 161, 375
BmcAI AGTACT 1 cut(s) 389
Bme1390I CCNGG 1 cut(s) 113
Bme18I GGWCC 1 cut(s) 115
BmeT110I CYCGRG 1 cut(s) 44
BmgT120I GGNCC 1 cut(s) 115
BmiI GGNNCC 1 cut(s) 216
BmrFI CCNGG 1 cut(s) 113
BoxI GACNNNNGTC 1 cut(s) 404
BpiI GAAGAC 1 cut(s) 38
Bpu10I CCTNAGC 1 cut(s) 210
BpuMI CCSGG 1 cut(s) 113
BsaI GGTCTC 1 cut(s) 412
BsaJI CCNNGG 5 cut(s) 111, 165, 218, 250, 305
Bsc4I CCNNNNNNNGG 3 cut(s) 27, 97, 166
BseDI CCNNGG 5 cut(s) 111, 165, 218, 250, 305
BseGI GGATG 1 cut(s) 180
BseLI CCNNNNNNNGG 3 cut(s) 27, 97, 166
BseMII CTCAG 1 cut(s) 201
BseX3I CGGCCG 1 cut(s) 157
BseXI GCAGC 4 cut(s) 69, 133, 157, 360
BsgI GTGCAG 1 cut(s) 284
Bsh1285I CGRYCG 1 cut(s) 160
BshFI GGCC 5 cut(s) 83, 159, 170, 249, 339
BsiEI CGRYCG 1 cut(s) 160
BsiHKCI CYCGRG 1 cut(s) 44
BsiSI CCGG 2 cut(s) 113, 138
BslI CCNNNNNNNGG 3 cut(s) 27, 97, 166
BsmAI GTCTC 1 cut(s) 412
BsmI GAATGC 1 cut(s) 105
BsnI GGCC 5 cut(s) 83, 159, 170, 249, 339
Bso31I GGTCTC 1 cut(s) 412
BsoBI CYCGRG 1 cut(s) 44
Bsp143I GATC 1 cut(s) 87
BspACI CCGC 2 cut(s) 160, 376
BspANI GGCC 5 cut(s) 83, 159, 170, 249, 339
BspCNI CTCAG 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 216
BspPI GGATC 1 cut(s) 82
BspTNI GGTCTC 1 cut(s) 412
BssECI CCNNGG 5 cut(s) 111, 165, 218, 250, 305
BssMI GATC 1 cut(s) 87
BssT1I CCWWGG 3 cut(s) 165, 250, 305
Bst4CI ACNGT 1 cut(s) 320
Bst6I CTCTTC 1 cut(s) 202
BstDEI CTNAG 1 cut(s) 210
BstDSI CCRYGG 1 cut(s) 218
BstF5I GGATG 1 cut(s) 180
BstKTI GATC 1 cut(s) 90
BstMAI GTCTC 1 cut(s) 412
BstMBI GATC 1 cut(s) 87
BstMCI CGRYCG 1 cut(s) 160
BstMWI GCNNNNNNNGC 1 cut(s) 382
BstPAI GACNNNNGTC 1 cut(s) 404
BstSCI CCNGG 1 cut(s) 111
BstSFI CTRYAG 1 cut(s) 319
BstV1I GCAGC 4 cut(s) 69, 133, 157, 360
BstV2I GAAGAC 1 cut(s) 38
BstX2I RGATCY 1 cut(s) 87
BstYI RGATCY 1 cut(s) 87
BstZI CGGCCG 1 cut(s) 157
BsuRI GGCC 5 cut(s) 83, 159, 170, 249, 339
BtgI CCRYGG 1 cut(s) 218
BtsCI GGATG 1 cut(s) 180
Cfr13I GGNCC 1 cut(s) 115
Csp6I GTAC 2 cut(s) 353, 388
CviQI GTAC 2 cut(s) 353, 388
DdeI CTNAG 1 cut(s) 210
DpnI GATC 1 cut(s) 89
DpnII GATC 1 cut(s) 87
EaeI YGGCCR 3 cut(s) 157, 168, 337
EagI CGGCCG 1 cut(s) 157
Eam1104I CTCTTC 1 cut(s) 202
EarI CTCTTC 1 cut(s) 202
EclXI CGGCCG 1 cut(s) 157
Eco130I CCWWGG 3 cut(s) 165, 250, 305
Eco31I GGTCTC 1 cut(s) 412
Eco47I GGWCC 1 cut(s) 115
Eco52I CGGCCG 1 cut(s) 157
Eco88I CYCGRG 1 cut(s) 44
EcoT14I CCWWGG 3 cut(s) 165, 250, 305
ErhI CCWWGG 3 cut(s) 165, 250, 305
FaiI YATR 4 cut(s) 291, 363, 404, 415
FblI GTMKAC 1 cut(s) 192
Fnu4HI GCNGC 5 cut(s) 58, 122, 146, 160, 374
FokI GGATG 1 cut(s) 167
Fsp4HI GCNGC 5 cut(s) 58, 122, 146, 160, 374
GluI GCNGC 5 cut(s) 58, 122, 146, 160, 374
HaeIII GGCC 5 cut(s) 83, 159, 170, 249, 339
HapII CCGG 2 cut(s) 113, 138
HincII GTYRAC 2 cut(s) 193, 316
HindII GTYRAC 2 cut(s) 193, 316
HinfI GANTC 1 cut(s) 194
HpaII CCGG 2 cut(s) 113, 138
Hpy166II GTNNAC 2 cut(s) 193, 316
Hpy188III TCNNGA 5 cut(s) 13, 44, 52, 184, 263
Hpy8I GTNNAC 2 cut(s) 193, 316
HpyAV CCTTC 2 cut(s) 95, 247
HpyCH4III ACNGT 1 cut(s) 320
HpyCH4V TGCA 3 cut(s) 4, 279, 301
HpyF10VI GCNNNNNNNGC 1 cut(s) 382
HpyF3I CTNAG 1 cut(s) 210
Kzo9I GATC 1 cut(s) 87
LmnI GCTCC 1 cut(s) 220
LpnPI CCDG 6 cut(s) 126, 131, 151, 189, 197, 248
Lsp1109I GCAGC 4 cut(s) 69, 133, 157, 360
MalI GATC 1 cut(s) 89
MboI GATC 1 cut(s) 87
MboII GAAGA 5 cut(s) 43, 189, 280, 337, 340
MflI RGATCY 1 cut(s) 87
MlsI TGGCCA 1 cut(s) 339
MluCI AATT 1 cut(s) 356
MluNI TGGCCA 1 cut(s) 339
MlyI GAGTC 1 cut(s) 188
MnlI CCTC 4 cut(s) 40, 205, 216, 372
Mox20I TGGCCA 1 cut(s) 339
MroXI GAANNNNTTC 1 cut(s) 105
MscI TGGCCA 1 cut(s) 339
MseI TTAA 1 cut(s) 396
Msp20I TGGCCA 1 cut(s) 339
MspI CCGG 2 cut(s) 113, 138
MspR9I CCNGG 1 cut(s) 113
Mva1269I GAATGC 1 cut(s) 105
MwoI GCNNNNNNNGC 1 cut(s) 382
NciI CCSGG 1 cut(s) 113
NdeII GATC 1 cut(s) 87
NlaIV GGNNCC 1 cut(s) 216
NmeAIII GCCGAG 1 cut(s) 389
PaeR7I CTCGAG 1 cut(s) 44
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PctI GAATGC 1 cut(s) 105
PdmI GAANNNNTTC 1 cut(s) 105
PflFI GACNNNGTC 1 cut(s) 74
PkrI GCNGC 5 cut(s) 59, 123, 147, 161, 375
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
PshAI GACNNNNGTC 1 cut(s) 404
PsiI TTATAA 1 cut(s) 363
PspN4I GGNNCC 1 cut(s) 216
PspPI GGNCC 1 cut(s) 115
PsuI RGATCY 1 cut(s) 87
PsyI GACNNNGTC 1 cut(s) 74
RsaI GTAC 2 cut(s) 354, 389
RsaNI GTAC 2 cut(s) 353, 388
SalI GTCGAC 1 cut(s) 191
SaqAI TTAA 1 cut(s) 396
SatI GCNGC 5 cut(s) 58, 122, 146, 160, 374
Sau3AI GATC 1 cut(s) 87
Sau96I GGNCC 1 cut(s) 115
ScaI AGTACT 1 cut(s) 389
SchI GAGTC 1 cut(s) 188
ScrFI CCNGG 1 cut(s) 113
SetI ASST 4 cut(s) 51, 150, 167, 227
SfcI CTRYAG 1 cut(s) 319
Sfr274I CTCGAG 1 cut(s) 44
SinI GGWCC 1 cut(s) 115
SlaI CTCGAG 1 cut(s) 44
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
Sse9I AATT 1 cut(s) 356
SsiI CCGC 2 cut(s) 160, 376
StyD4I CCNGG 1 cut(s) 111
StyI CCWWGG 3 cut(s) 165, 250, 305
TaaI ACNGT 1 cut(s) 320
TaqI TCGA 5 cut(s) 45, 51, 69, 192, 232
TasI AATT 1 cut(s) 356
TatI WGTACW 2 cut(s) 352, 387
TauI GCSGC 1 cut(s) 162
Tru1I TTAA 1 cut(s) 396
Tru9I TTAA 1 cut(s) 396
TseI GCWGC 4 cut(s) 57, 121, 145, 373
TspDTI ATGAA 1 cut(s) 189
TspGWI ACGGA 1 cut(s) 207
Tth111I GACNNNGTC 1 cut(s) 74
VpaK11BI GGWCC 1 cut(s) 115
XhoI CTCGAG 1 cut(s) 44
XmiI GTMKAC 1 cut(s) 192
XmnI GAANNNNTTC 1 cut(s) 105
ZrmI AGTACT 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.