Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002166

Physical Location & Seq

Genomic Coordinates Forward (+)

23392069 .. 23393628

Gene Structure 1560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g32551.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGCAGATCTTTGTGAAAACCCTAACCGGGAAGACCATCACCCTTGAGGTCGAGTCCAGCGACACCATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAAGGTATCCCGCCGGACCAGCAGAGGCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGTACTCTCGCCGATTACAACATCCAGAAAGAGTCTACCCTGCATTTGGTTCTGAGGCTTCGTGGTGGTATCATTGAGCCTTCGCTCATGGCATTGGCTAGGAAGTACAACCAAGAGAAGATGATCTGCCGCAAGTGCTATGCACGTCTTCACCCCCGTGCAGTCAACTGCAGGAAGAAGAAGTGTGGACACAGCAACCAGCTGAGGCCAAAGAAGAAGATCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 ko03320 map03010 map03320

Pfam Domains

Protein Families

Ribosomal_L40e ubiquitin

Protein Analysis

129

Amino Acids

14.69

Weight (kDa)

9.94

Isoelectric Point (pI)

33.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD	PF11976	1 - 71	8.9e-18	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	3 - 74	1.1e-32	Ubiquitin family
Ribosomal_L40e	PF01020	78 - 127	3.7e-31	Ribosomal L40e family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36170 AT3G52590
fragaria_vesca	FvH4_6g19302 FvH4_6g19302 FvH4_7g32551
malus_domestica	MD01G1226400.v1.1 MD07G1296800.v1.1 MD12G1028600.v1.1 MD14G1028800.v1.1
prunus_persica	Prupe.2G316400_v2.0.a1 Prupe.7G102800_v2.0.a1
pyrus_communis	pycom01g23500 pycom07g26950 pycom12g02740 pycom14g02690
rosa_chinensis	RchiOBHm_Chr1g0336321 RchiOBHm_Chr1g0382401 RchiOBHm_Chr2g0129851 RchiOBHm_Chr2g0148571 RchiOBHm_Chr2g0162391 RchiOBHm_Chr3g0474431 RchiOBHm_Chr3g0474471 RchiOBHm_Chr3g0485451 RchiOBHm_Chr4g0402971
rosa_multiflora	Rmu_sc0000048.1_g000015 Rmu_sc0009916.1_g000009
rosa_roxburghii	Rroxscaffold_1G00002380 Rroxscaffold_4G00278130
rosa_rugosa	Rorug01G0434100 Rorug03G0140900
rosa_samantha	Rh1AG458800 Rh1BG415100 Rh1CG429200 Rh1DG447200 Rh2BG576000 Rh3AG191600 Rh3AG267800 Rh3BG221100 Rh3BG221300 Rh4CG124000
rosa_wichuraiana	Rw1G041220 Rw3G017490 Rw6G010860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	194
AciI	CCGC	2 cut(s)	110, 289
AclWI	GGATC	1 cut(s)	82
AcoI	YGGCCR	1 cut(s)	157
AfaI	GTAC	2 cut(s)	163, 266
AfiI	CCNNNNNNNGG	3 cut(s)	27, 97, 205
AjiI	CACGTC	1 cut(s)	305
AjnI	CCWGG	1 cut(s)	90
AleI	CACNNNNGTG	1 cut(s)	315
AluBI	AGCT	2 cut(s)	148, 361
AluI	AGCT	2 cut(s)	148, 361
AlwI	GGATC	1 cut(s)	82
Ama87I	CYCGRG	1 cut(s)	149
AoxI	GGCC	2 cut(s)	157, 365
ApeKI	GCWGC	1 cut(s)	145
AspS9I	GGNCC	1 cut(s)	115
AsuC2I	CCSGG	1 cut(s)	28
AsuHPI	GGTGA	2 cut(s)	31, 302
AvaI	CYCGRG	1 cut(s)	149
AvaII	GGWCC	1 cut(s)	115
BbsI	GAAGAC	2 cut(s)	38, 299
BbvCI	CCTCAGC	1 cut(s)	362
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	3 cut(s)	44, 74, 149
BceAI	ACGGC	1 cut(s)	144
BciT130I	CCWGG	1 cut(s)	92
BciVI	GTATCC	1 cut(s)	116
BcnI	CCSGG	1 cut(s)	28
BfaI	CTAG	1 cut(s)	258
BfmI	CTRYAG	1 cut(s)	328
BfuI	GTATCC	1 cut(s)	116
BglII	AGATCT	1 cut(s)	6
BisI	GCNGC	2 cut(s)	146, 289
BlsI	GCNGC	2 cut(s)	147, 290
Bme1390I	CCNGG	2 cut(s)	28, 92
Bme18I	GGWCC	1 cut(s)	115
BmeT110I	CYCGRG	1 cut(s)	149
BmgBI	CACGTC	1 cut(s)	305
BmgT120I	GGNCC	1 cut(s)	115
BmrFI	CCNGG	2 cut(s)	28, 92
BpiI	GAAGAC	2 cut(s)	38, 299
Bpu10I	CCTNAGC	1 cut(s)	362
BpuEI	CTTGAG	1 cut(s)	65
BpuMI	CCSGG	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	3 cut(s)	27, 97, 205
BseBI	CCWGG	1 cut(s)	92
BseGI	GGATG	2 cut(s)	160, 180
BseLI	CCNNNNNNNGG	3 cut(s)	27, 97, 205
BseMII	CTCAG	2 cut(s)	203, 353
BseXI	GCAGC	1 cut(s)	157
BsgI	GTGCAG	1 cut(s)	339
BshFI	GGCC	2 cut(s)	159, 367
BsiHKCI	CYCGRG	1 cut(s)	149
BsiSI	CCGG	3 cut(s)	27, 113, 138
BslI	CCNNNNNNNGG	3 cut(s)	27, 97, 205
BsnI	GGCC	2 cut(s)	159, 367
BsoBI	CYCGRG	1 cut(s)	149
Bsp143I	GATC	4 cut(s)	6, 87, 282, 378
BspACI	CCGC	2 cut(s)	110, 289
BspANI	GGCC	2 cut(s)	159, 367
BspCNI	CTCAG	2 cut(s)	204, 354
BspMAI	CTGCAG	1 cut(s)	332
BspPI	GGATC	1 cut(s)	82
BssMI	GATC	4 cut(s)	6, 87, 282, 378
Bst2UI	CCWGG	1 cut(s)	92
BstDEI	CTNAG	3 cut(s)	84, 212, 362
BstF5I	GGATG	2 cut(s)	160, 180
BstKTI	GATC	4 cut(s)	9, 90, 285, 381
BstMBI	GATC	4 cut(s)	6, 87, 282, 378
BstMWI	GCNNNNNNNGC	2 cut(s)	118, 294
BstNI	CCWGG	1 cut(s)	92
BstSCI	CCNGG	2 cut(s)	26, 90
BstSFI	CTRYAG	1 cut(s)	328
BstV1I	GCAGC	1 cut(s)	157
BstV2I	GAAGAC	2 cut(s)	38, 299
BstX2I	RGATCY	2 cut(s)	6, 87
BstYI	RGATCY	2 cut(s)	6, 87
BsuI	GTATCC	1 cut(s)	116
BsuRI	GGCC	2 cut(s)	159, 367
BtrI	CACGTC	1 cut(s)	305
BtsCI	GGATG	2 cut(s)	160, 180
Cfr13I	GGNCC	1 cut(s)	115
Csp6I	GTAC	2 cut(s)	162, 265
CviAII	CATG	1 cut(s)	247
CviJI	RGCY	9 cut(s)	83, 127, 148, 159, 217, 238, 257, 361, 367
CviKI_1	RGCY	9 cut(s)	83, 127, 148, 159, 217, 238, 257, 361, 367
CviQI	GTAC	2 cut(s)	162, 265
DdeI	CTNAG	3 cut(s)	84, 212, 362
DpnI	GATC	4 cut(s)	8, 89, 284, 380
DpnII	GATC	4 cut(s)	6, 87, 282, 378
EaeI	YGGCCR	1 cut(s)	157
Eco47I	GGWCC	1 cut(s)	115
Eco88I	CYCGRG	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	90
FaeI	CATG	1 cut(s)	250
FaiI	YATR	2 cut(s)	248, 300
FatI	CATG	1 cut(s)	246
FauI	CCCGC	1 cut(s)	117
FblI	GTMKAC	1 cut(s)	194
Fnu4HI	GCNGC	2 cut(s)	146, 289
FokI	GGATG	2 cut(s)	167, 167
Fsp4HI	GCNGC	2 cut(s)	146, 289
FspBI	CTAG	1 cut(s)	258
GluI	GCNGC	2 cut(s)	146, 289
HaeIII	GGCC	2 cut(s)	159, 367
HapII	CCGG	3 cut(s)	27, 113, 138
Hin1II	CATG	1 cut(s)	250
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HinfI	GANTC	2 cut(s)	53, 191
HpaII	CCGG	3 cut(s)	27, 113, 138
HphI	GGTGA	2 cut(s)	31, 302
Hpy166II	GTNNAC	3 cut(s)	195, 325, 347
Hpy188I	TCNGA	1 cut(s)	213
Hpy188III	TCNNGA	1 cut(s)	184
Hpy8I	GTNNAC	3 cut(s)	195, 325, 347
HpyAV	CCTTC	2 cut(s)	95, 249
HpyCH4IV	ACGT	2 cut(s)	75, 304
HpyCH4V	TGCA	5 cut(s)	4, 202, 302, 320, 330
HpyF10VI	GCNNNNNNNGC	2 cut(s)	118, 294
HpyF3I	CTNAG	3 cut(s)	84, 212, 362
HpySE526I	ACGT	2 cut(s)	75, 304
Hsp92II	CATG	1 cut(s)	250
Kzo9I	GATC	4 cut(s)	6, 87, 282, 378
Lsp1109I	GCAGC	1 cut(s)	157
MaeI	CTAG	1 cut(s)	258
MaeII	ACGT	2 cut(s)	75, 304
MalI	GATC	4 cut(s)	8, 89, 284, 380
MboI	GATC	4 cut(s)	6, 87, 282, 378
MboII	GAAGA	7 cut(s)	43, 124, 289, 299, 346, 349, 385
MflI	RGATCY	2 cut(s)	6, 87
MlyI	GAGTC	2 cut(s)	62, 200
MnlI	CCTC	5 cut(s)	40, 117, 145, 207, 357
MslI	CAYNNNNRTG	1 cut(s)	315
MspA1I	CMGCKG	1 cut(s)	361
MspI	CCGG	3 cut(s)	27, 113, 138
MspR9I	CCNGG	2 cut(s)	28, 92
MvaI	CCWGG	1 cut(s)	92
MwoI	GCNNNNNNNGC	2 cut(s)	118, 294
NciI	CCSGG	1 cut(s)	28
NdeII	GATC	4 cut(s)	6, 87, 282, 378
NlaIII	CATG	1 cut(s)	250
OliI	CACNNNNGTG	1 cut(s)	315
PaeR7I	CTCGAG	1 cut(s)	149
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PflFI	GACNNNGTC	1 cut(s)	74
PfoI	TCCNGGA	1 cut(s)	90
PkrI	GCNGC	2 cut(s)	147, 290
PleI	GAGTC	2 cut(s)	61, 199
PpsI	GAGTC	2 cut(s)	61, 199
Psp6I	CCWGG	1 cut(s)	90
PspGI	CCWGG	1 cut(s)	90
PspPI	GGNCC	1 cut(s)	115
PspXI	VCTCGAGB	1 cut(s)	149
PstI	CTGCAG	1 cut(s)	332
PsuI	RGATCY	2 cut(s)	6, 87
PsyI	GACNNNGTC	1 cut(s)	74
PvuII	CAGCTG	1 cut(s)	361
RsaI	GTAC	2 cut(s)	163, 266
RsaNI	GTAC	2 cut(s)	162, 265
RseI	CAYNNNNRTG	1 cut(s)	315
SatI	GCNGC	2 cut(s)	146, 289
Sau3AI	GATC	4 cut(s)	6, 87, 282, 378
Sau96I	GGNCC	1 cut(s)	115
SchI	GAGTC	2 cut(s)	62, 200
ScrFI	CCNGG	2 cut(s)	28, 92
SetI	ASST	6 cut(s)	51, 78, 106, 150, 307, 363
SfcI	CTRYAG	1 cut(s)	328
Sfr274I	CTCGAG	1 cut(s)	149
SinI	GGWCC	1 cut(s)	115
SlaI	CTCGAG	1 cut(s)	149
SmiMI	CAYNNNNRTG	1 cut(s)	315
SmlI	CTYRAG	2 cut(s)	44, 149
SmoI	CTYRAG	2 cut(s)	44, 149
SsiI	CCGC	2 cut(s)	110, 289
SspMI	CTAG	1 cut(s)	258
StyD4I	CCNGG	2 cut(s)	26, 90
TaiI	ACGT	2 cut(s)	78, 307
TaqI	TCGA	3 cut(s)	51, 69, 150
TatI	WGTACW	1 cut(s)	264
TauI	GCSGC	1 cut(s)	291
TseI	GCWGC	1 cut(s)	145
Tth111I	GACNNNGTC	1 cut(s)	74
VpaK11BI	GGWCC	1 cut(s)	115
XhoI	CTCGAG	1 cut(s)	149
XmiI	GTMKAC	1 cut(s)	194
XspI	CTAG	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.