AT2G37020

Translin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0005043
Physical Location & Seq
Forward (+)
15546414 .. 15549039
2626 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G37020.3

Sequence Viewer

Length: 927 bp
ATGAATTCGGCGTTTCGAAACGTTCACATCACTGCGTCTCGTTTGATAAACCCTAAGCCCTTTTCTTCTTCGATTCTCCATTTTCTTCCTCTCTGTTCCGGCGACGCTTCTCCTCGCCGTTCCAATCCTCTCCGGCATAGAAACTCGGTGTCTCCTTCATCTTCCTTTCCCTTCTGTTCGACTTCTTCCTTTTCTTCTTTCTACATTCCTATGGCGGGAGGAGATGGTCAGGTGTCTCATTCGCTTGAGAAGCAGTTCGAGAGTTTCCGTGTTCAATTGGAAGAATCTGCAGCTTTGAGAGAGCAGATTCGTGCTGTGGTTATGGAGATTGAGTCTGCTACTAGGCTTATTCAAGCTAATCTTCTTCTCGTTCATCAATCGCGTCCTATTCCTGAGGTTATCGAGAAAGCTAAGGAAAAAATCGTTGATTTGAAGCAGTATTATGGTCGGCTTGCTGAAATTCTTGAGGAGTGTCCTGGACAATACTATAGGTACCATGGAGACTGGAGAAGTGAAACACAGGCAGTGGTCTCCCAGCTTGCTTTTATGCACTGGCTAGAAACTGGAACTCTTCTCGTGCATACCGAAGCTGAAGAAAAACTTGGGTTGAACAGTTTGGAGTTTGGATTGGAGACAGAAGATTATCTCACTGGAATTTGTTTCATGTCAAACGATTTGCCTAGGTACGTGGTTAATCGAGTGACAGCAGGAGACTATGACTGCCCAAGAAAGGTGATGAATTTCCTGACAGATCTTCATGCAGCCTTTCGCATGCTCAATCTCAGGAACGATTTCCTGCGCAAGAAATTCGACAGTATGAAGTACGACCTAAGAAGAGTGGAAGAAGTTTACTATGATGTCAAGATCCGAGGTTTGATTTCCGGCGGAGATCCTCCTGGCGTCCAAGCAGTCCAAGGCCAATCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Translin

Protein Analysis

308

Amino Acids

35.05

Weight (kDa)

6.52

Isoelectric Point (pI)

59.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Translin PF01997 100 - 292 2.2e-56 Translin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 800
Acc65I GGTACC 1 cut(s) 492
AccB1I GGYRCC 1 cut(s) 492
AccII CGCG 1 cut(s) 382
AciI CCGC 2 cut(s) 215, 885
AclI AACGTT 1 cut(s) 21
AclWI GGATC 2 cut(s) 859, 884
AcsI RAATTY 5 cut(s) 4, 459, 654, 739, 806
AcuI CTGAAG 1 cut(s) 612
AcyI GRCGYC 1 cut(s) 900
AfaI GTAC 3 cut(s) 494, 686, 824
AfiI CCNNNNNNNGG 2 cut(s) 215, 730
AgsI TTSAA 4 cut(s) 275, 353, 433, 610
AjnI CCWGG 2 cut(s) 475, 895
AjuI GAANNNNNNNTTGG 2 cut(s) 585, 617
AluBI AGCT 5 cut(s) 293, 356, 410, 538, 590
AluI AGCT 5 cut(s) 293, 356, 410, 538, 590
Alw26I GTCTC 7 cut(s) 42, 156, 240, 495, 535, 626, 705
AlwI GGATC 2 cut(s) 859, 884
AoxI GGCC 1 cut(s) 916
ApeKI GCWGC 2 cut(s) 290, 761
ApoI RAATTY 5 cut(s) 4, 459, 654, 739, 806
Asp700I GAANNNNTTC 2 cut(s) 254, 791
Asp718I GGTACC 1 cut(s) 492
AspA2I CCTAGG 1 cut(s) 680
AspLEI GCGC 1 cut(s) 801
AsuHPI GGTGA 1 cut(s) 745
AsuII TTCGAA 1 cut(s) 16
AvrII CCTAGG 1 cut(s) 680
AxyI CCTNAGG 1 cut(s) 393
BanI GGYRCC 1 cut(s) 492
BauI CACGAG 1 cut(s) 575
BbvI GCAGC 2 cut(s) 302, 773
BccI CCATC 1 cut(s) 218
BceAI ACGGC 1 cut(s) 102
BcgI CGANNNNNNTGC 2 cut(s) 790, 824
BciT130I CCWGG 2 cut(s) 477, 897
BcoDI GTCTC 7 cut(s) 42, 156, 240, 495, 535, 626, 705
BfaI CTAG 3 cut(s) 342, 557, 681
BfmI CTRYAG 2 cut(s) 288, 487
BglII AGATCT 1 cut(s) 751
BisI GCNGC 2 cut(s) 291, 762
BlnI CCTAGG 1 cut(s) 680
BlsI GCNGC 2 cut(s) 292, 763
Bme1390I CCNGG 2 cut(s) 477, 897
BmiI GGNNCC 1 cut(s) 494
BmrFI CCNGG 2 cut(s) 477, 897
BpmI CTGGAG 1 cut(s) 526
Bpu10I CCTNAGC 2 cut(s) 54, 411
Bpu14I TTCGAA 1 cut(s) 16
BpuEI CTTGAG 2 cut(s) 266, 485
BsaAI YACGTR 1 cut(s) 688
BsaHI GRCGYC 1 cut(s) 900
BsaI GGTCTC 1 cut(s) 535
BsaJI CCNNGG 4 cut(s) 496, 680, 868, 913
BsaXI ACNNNNNCTCC 2 cut(s) 317, 347
Bsc4I CCNNNNNNNGG 2 cut(s) 215, 730
Bse1I ACTGG 4 cut(s) 509, 557, 568, 655
Bse21I CCTNAGG 1 cut(s) 393
BseBI CCWGG 2 cut(s) 477, 897
BseDI CCNNGG 4 cut(s) 496, 680, 868, 913
BseLI CCNNNNNNNGG 2 cut(s) 215, 730
BseMII CTCAG 2 cut(s) 384, 796
BseNI ACTGG 4 cut(s) 509, 557, 568, 655
BseRI GAGGAG 3 cut(s) 102, 234, 482
BseXI GCAGC 2 cut(s) 302, 773
BseYI CCCAGC 1 cut(s) 534
Bsh1236I CGCG 1 cut(s) 382
BshFI GGCC 1 cut(s) 918
BshNI GGYRCC 1 cut(s) 492
BsiSI CCGG 3 cut(s) 99, 133, 882
BslI CCNNNNNNNGG 2 cut(s) 215, 730
BsmAI GTCTC 7 cut(s) 42, 156, 240, 495, 535, 626, 705
BsmBI CGTCTC 1 cut(s) 42
BsnI GGCC 1 cut(s) 918
Bso31I GGTCTC 1 cut(s) 535
Bsp119I TTCGAA 1 cut(s) 16
Bsp143I GATC 3 cut(s) 751, 864, 889
Bsp19I CCATGG 1 cut(s) 496
BspACI CCGC 2 cut(s) 215, 885
BspANI GGCC 1 cut(s) 918
BspCNI CTCAG 2 cut(s) 385, 795
BspFNI CGCG 1 cut(s) 382
BspLI GGNNCC 1 cut(s) 494
BspMAI CTGCAG 1 cut(s) 292
BspPI GGATC 2 cut(s) 859, 884
BspT104I TTCGAA 1 cut(s) 16
BspT107I GGYRCC 1 cut(s) 492
BspTNI GGTCTC 1 cut(s) 535
BsrI ACTGG 4 cut(s) 509, 557, 568, 655
BssECI CCNNGG 4 cut(s) 496, 680, 868, 913
BssMI GATC 3 cut(s) 751, 864, 889
BssNI GRCGYC 1 cut(s) 900
BssSI CACGAG 1 cut(s) 575
BssT1I CCWWGG 3 cut(s) 496, 680, 913
Bst2BI CACGAG 1 cut(s) 575
Bst2UI CCWGG 2 cut(s) 477, 897
Bst4CI ACNGT 2 cut(s) 614, 815
Bst6I CTCTTC 2 cut(s) 576, 829
BstACI GRCGYC 1 cut(s) 900
BstBAI YACGTR 1 cut(s) 688
BstBI TTCGAA 1 cut(s) 16
BstC8I GCNNGC 3 cut(s) 453, 540, 773
BstDEI CTNAG 5 cut(s) 54, 393, 411, 782, 830
BstDSI CCRYGG 1 cut(s) 496
BstFNI CGCG 1 cut(s) 382
BstHHI GCGC 1 cut(s) 801
BstKTI GATC 3 cut(s) 754, 867, 892
BstMAI GTCTC 7 cut(s) 42, 156, 240, 495, 535, 626, 705
BstMBI GATC 3 cut(s) 751, 864, 889
BstMWI GCNNNNNNNGC 1 cut(s) 250
BstNI CCWGG 2 cut(s) 477, 897
BstNSI RCATGY 1 cut(s) 775
BstSCI CCNGG 2 cut(s) 475, 895
BstSFI CTRYAG 2 cut(s) 288, 487
BstUI CGCG 1 cut(s) 382
BstV1I GCAGC 2 cut(s) 302, 773
BstX2I RGATCY 3 cut(s) 751, 864, 889
BstYI RGATCY 3 cut(s) 751, 864, 889
Bsu36I CCTNAGG 1 cut(s) 393
BsuRI GGCC 1 cut(s) 918
BtgI CCRYGG 1 cut(s) 496
BtsI GCAGTG 2 cut(s) 30, 531
BtsIMutI CAGTG 4 cut(s) 30, 531, 550, 648
Cac8I GCNNGC 3 cut(s) 453, 540, 773
CfoI GCGC 1 cut(s) 801
CseI GACGC 4 cut(s) 24, 113, 371, 889
Csp6I GTAC 3 cut(s) 493, 685, 823
CviAII CATG 4 cut(s) 497, 664, 758, 772
CviQI GTAC 3 cut(s) 493, 685, 823
DdeI CTNAG 5 cut(s) 54, 393, 411, 782, 830
DpnI GATC 3 cut(s) 753, 866, 891
DpnII GATC 3 cut(s) 751, 864, 889
Eam1104I CTCTTC 2 cut(s) 576, 829
EarI CTCTTC 2 cut(s) 576, 829
EciI GGCGGA 1 cut(s) 900
Eco130I CCWWGG 3 cut(s) 496, 680, 913
Eco31I GGTCTC 1 cut(s) 535
Eco57I CTGAAG 1 cut(s) 612
Eco81I CCTNAGG 1 cut(s) 393
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 2 cut(s) 475, 895
EcoT14I CCWWGG 3 cut(s) 496, 680, 913
ErhI CCWWGG 3 cut(s) 496, 680, 913
Esp3I CGTCTC 1 cut(s) 42
FaeI CATG 4 cut(s) 500, 667, 761, 775
FalI AAGNNNNNCTT 4 cut(s) 345, 377, 585, 617
FatI CATG 4 cut(s) 496, 663, 757, 771
FauI CCCGC 1 cut(s) 208
Fnu4HI GCNGC 2 cut(s) 291, 762
Fsp4HI GCNGC 2 cut(s) 291, 762
FspBI CTAG 3 cut(s) 342, 557, 681
FspI TGCGCA 1 cut(s) 800
GlaI GCGC 1 cut(s) 800
GluI GCNGC 2 cut(s) 291, 762
GsaI CCCAGC 1 cut(s) 538
GsuI CTGGAG 1 cut(s) 526
HaeIII GGCC 1 cut(s) 918
HapII CCGG 3 cut(s) 99, 133, 882
HgaI GACGC 4 cut(s) 24, 113, 371, 889
HhaI GCGC 1 cut(s) 801
Hin1I GRCGYC 1 cut(s) 900
Hin1II CATG 4 cut(s) 500, 667, 761, 775
Hin6I GCGC 1 cut(s) 799
HinP1I GCGC 1 cut(s) 799
HinfI GANTC 4 cut(s) 73, 284, 307, 332
HpaII CCGG 3 cut(s) 99, 133, 882
HphI GGTGA 1 cut(s) 745
Hpy166II GTNNAC 2 cut(s) 25, 850
Hpy188I TCNGA 1 cut(s) 869
Hpy188III TCNNGA 7 cut(s) 259, 392, 403, 464, 745, 784, 862
Hpy8I GTNNAC 2 cut(s) 25, 850
Hpy99I CGWCG 1 cut(s) 107
HpyAV CCTTC 2 cut(s) 165, 181
HpyCH4III ACNGT 2 cut(s) 614, 815
HpyCH4IV ACGT 2 cut(s) 21, 687
HpyCH4V TGCA 4 cut(s) 290, 550, 580, 761
HpyF10VI GCNNNNNNNGC 1 cut(s) 250
HpyF3I CTNAG 5 cut(s) 54, 393, 411, 782, 830
HpySE526I ACGT 2 cut(s) 21, 687
Hsp92I GRCGYC 1 cut(s) 900
Hsp92II CATG 4 cut(s) 500, 667, 761, 775
HspAI GCGC 1 cut(s) 799
KpnI GGTACC 1 cut(s) 496
Kzo9I GATC 3 cut(s) 751, 864, 889
Lsp1109I GCAGC 2 cut(s) 302, 773
MaeI CTAG 3 cut(s) 342, 557, 681
MaeII ACGT 2 cut(s) 21, 687
MaeIII GTNAC 1 cut(s) 700
MalI GATC 3 cut(s) 753, 866, 891
MboI GATC 3 cut(s) 751, 864, 889
MfeI CAATTG 1 cut(s) 275
MflI RGATCY 3 cut(s) 751, 864, 889
MluCI AATT 6 cut(s) 4, 275, 459, 654, 739, 806
MlyI GAGTC 1 cut(s) 341
MnlI CCTC 8 cut(s) 99, 123, 138, 212, 388, 460, 863, 903
MroXI GAANNNNTTC 2 cut(s) 254, 791
MseI TTAA 1 cut(s) 693
MslI CAYNNNNRTG 1 cut(s) 209
MspI CCGG 3 cut(s) 99, 133, 882
MspR9I CCNGG 2 cut(s) 477, 897
MunI CAATTG 1 cut(s) 275
MvaI CCWGG 2 cut(s) 477, 897
MvnI CGCG 1 cut(s) 382
MwoI GCNNNNNNNGC 1 cut(s) 250
NcoI CCATGG 1 cut(s) 496
NdeII GATC 3 cut(s) 751, 864, 889
NlaIII CATG 4 cut(s) 500, 667, 761, 775
NlaIV GGNNCC 1 cut(s) 494
NmuCI GTSAC 1 cut(s) 700
NsbI TGCGCA 1 cut(s) 800
NspI RCATGY 1 cut(s) 775
NspV TTCGAA 1 cut(s) 16
PaeI GCATGC 1 cut(s) 775
PcsI WCGNNNNNNNCGW 1 cut(s) 582
PdmI GAANNNNTTC 2 cut(s) 254, 791
PfeI GAWTC 3 cut(s) 73, 284, 307
PfoI TCCNGGA 1 cut(s) 475
PkrI GCNGC 2 cut(s) 292, 763
PleI GAGTC 1 cut(s) 340
PpsI GAGTC 1 cut(s) 340
Ppu21I YACGTR 1 cut(s) 688
Psp1406I AACGTT 1 cut(s) 21
Psp6I CCWGG 2 cut(s) 475, 895
PspFI CCCAGC 1 cut(s) 534
PspGI CCWGG 2 cut(s) 475, 895
PspN4I GGNNCC 1 cut(s) 494
PstI CTGCAG 1 cut(s) 292
PsuI RGATCY 3 cut(s) 751, 864, 889
RsaI GTAC 3 cut(s) 494, 686, 824
RsaNI GTAC 3 cut(s) 493, 685, 823
RseI CAYNNNNRTG 1 cut(s) 209
SaqAI TTAA 1 cut(s) 693
SatI GCNGC 2 cut(s) 291, 762
Sau3AI GATC 3 cut(s) 751, 864, 889
SchI GAGTC 1 cut(s) 341
ScrFI CCNGG 2 cut(s) 477, 897
SfcI CTRYAG 2 cut(s) 288, 487
SfuI TTCGAA 1 cut(s) 16
SmiMI CAYNNNNRTG 1 cut(s) 209
SmlI CTYRAG 2 cut(s) 245, 464
SmoI CTYRAG 2 cut(s) 245, 464
SphI GCATGC 1 cut(s) 775
Sse9I AATT 6 cut(s) 4, 275, 459, 654, 739, 806
SsiI CCGC 2 cut(s) 215, 885
SspMI CTAG 3 cut(s) 342, 557, 681
StyD4I CCNGG 2 cut(s) 475, 895
StyI CCWWGG 3 cut(s) 496, 680, 913
TaaI ACNGT 2 cut(s) 614, 815
TaiI ACGT 2 cut(s) 24, 690
TaqI TCGA 7 cut(s) 16, 71, 179, 258, 402, 697, 810
TasI AATT 6 cut(s) 4, 275, 459, 654, 739, 806
TfiI GAWTC 3 cut(s) 73, 284, 307
Tru1I TTAA 1 cut(s) 693
Tru9I TTAA 1 cut(s) 693
TscAI CASTG 4 cut(s) 37, 531, 557, 655
TseFI GTSAC 1 cut(s) 700
TseI GCWGC 2 cut(s) 290, 761
Tsp45I GTSAC 1 cut(s) 700
TspDTI ATGAA 7 cut(s) 17, 147, 362, 652, 746, 752, 833
TspGWI ACGGA 1 cut(s) 257
TspRI CASTG 4 cut(s) 37, 531, 557, 655
XapI RAATTY 5 cut(s) 4, 459, 654, 739, 806
XceI RCATGY 1 cut(s) 775
XmaJI CCTAGG 1 cut(s) 680
XmnI GAANNNNTTC 2 cut(s) 254, 791
XspI CTAG 3 cut(s) 342, 557, 681
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.