Rh3BG179000

Translin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0005043
Physical Location & Seq
Reverse (-)
15741819 .. 15744366
2548 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG179000.1

Sequence Viewer

Length: 897 bp
ATGAAATCAGCGTTTCGAAACGGTTACTTCTTCACACTCTCTCGCTCCTTAAACCCTAACCCTAACCCTAACCTTCCCTCCACTCTCTTCTCTCTCCATCTCATCCCTCCTCACTCATCTCCGTCCATCTCACCGCCCCCATTCCGCTCCGTCTCTCCGATCGCCAGAATTTCTGGCCTCTCCTTCACCTCCATGGCGGGCGGTGAACCCCACGCGCTTCCACTTCTGGAGAAGCAGTTCGATGACTTCCGCTCTCAGCTCGAAGAGTCGGGAACACTGCGCGACCGCATTCGAGCCGTGGTGGCGGAGATCGAGTCCACCTCTAGGTTTATTCACTCGAGCCTCCTCTTGGTTCACCAGTCGCGTTCAACACCCGAGGTTTTGGAGAAGCCAAAGGCTCAAATTGTTGTGCTGAAGGAGCTCTACAATCGGCTCGCTGAAATTGTGCGTGAAAGCCCTGGGGGATATTACAGATATCATGGTGATTGGAAGTCTGAGACGCAGACTGTGGTTTCGCTGCTTGCTTTTATGCATTGGTTAGAGACAGGGACGCTTTTGTTGCACACTGAAGCTGAGGAAAAACTTGGGTTGAGCGGCTCAGAATTTGGTCTGGATGTTGAAGACTATCTTGTTGGTATTTGCTTCATGTCTAATGAACTGCCTAGGTATGTGGTTAACCAAGTGACAGCTGGGGATTATGATTGCCCAAGAAAGGTGATGAAGTTTTTGACAGACCTCCATGCAGCCTTCCGACTGCTCAATCTTCGAAATGACTTTTTGCGCAAGAAATTTGATGGTATGAAGTATGACCTAAGAAGAGTTGAAGAGGTTTACTATGATGTAAAGATCCGAGGCTTGGCAGCCAATGTGGATTCTGTGGAAAAGGCAGCAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Translin

Protein Analysis

298

Amino Acids

33.72

Weight (kDa)

6.77

Isoelectric Point (pI)

51.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Translin PF01997 93 - 285 2.6e-57 Translin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 782
AccBSI CCGCTC 3 cut(s) 147, 252, 594
AccII CGCG 3 cut(s) 215, 282, 364
AciI CCGC 8 cut(s) 134, 145, 197, 201, 250, 286, 305, 594
AclWI GGATC 1 cut(s) 841
AcsI RAATTY 3 cut(s) 168, 602, 788
AcuI CTGAAG 2 cut(s) 434, 588
AfiI CCNNNNNNNGG 4 cut(s) 324, 349, 712, 856
AgsI TTSAA 3 cut(s) 369, 620, 824
AjnI CCWGG 1 cut(s) 457
AloI GAACNNNNNNTCC 2 cut(s) 221, 253
AluBI AGCT 4 cut(s) 259, 421, 572, 689
AluI AGCT 4 cut(s) 259, 421, 572, 689
Alw21I GWGCWC 1 cut(s) 423
Alw26I GTCTC 3 cut(s) 157, 491, 536
AlwI GGATC 1 cut(s) 841
Ama87I CYCGRG 2 cut(s) 337, 374
AoxI GGCC 1 cut(s) 175
ApeKI GCWGC 5 cut(s) 517, 743, 860, 887, 890
ApoI RAATTY 3 cut(s) 168, 602, 788
ArsI GACNNNNNNTTYG 2 cut(s) 496, 528
Asp700I GAANNNNTTC 1 cut(s) 236
AspA2I CCTAGG 1 cut(s) 662
AspLEI GCGC 3 cut(s) 217, 282, 783
AsuHPI GGTGA 6 cut(s) 123, 178, 215, 347, 494, 727
AsuII TTCGAA 2 cut(s) 16, 766
AvaI CYCGRG 2 cut(s) 337, 374
AvrII CCTAGG 1 cut(s) 662
BanII GRGCYC 1 cut(s) 423
BarI GAAGNNNNNNTAC 2 cut(s) 407, 439
BbsI GAAGAC 1 cut(s) 627
Bbv12I GWGCWC 1 cut(s) 423
BbvCI CCTCAGC 1 cut(s) 573
BbvI GCAGC 3 cut(s) 504, 755, 872
BccI CCATC 3 cut(s) 105, 134, 788
BceAI ACGGC 1 cut(s) 281
BciT130I CCWGG 1 cut(s) 459
BcoDI GTCTC 3 cut(s) 157, 491, 536
BfaI CTAG 2 cut(s) 324, 663
BglI GCCNNNNNGGC 1 cut(s) 302
BisI GCNGC 6 cut(s) 518, 595, 744, 861, 888, 891
BlnI CCTAGG 1 cut(s) 662
BlsI GCNGC 6 cut(s) 519, 596, 745, 862, 889, 892
Bme1390I CCNGG 1 cut(s) 459
BmeT110I CYCGRG 2 cut(s) 337, 374
BmrFI CCNGG 1 cut(s) 459
BpiI GAAGAC 1 cut(s) 627
BplI GAGNNNNNCTC 2 cut(s) 305, 337
BpmI CTGGAG 1 cut(s) 248
Bpu10I CCTNAGC 1 cut(s) 573
Bpu14I TTCGAA 2 cut(s) 16, 766
BsaJI CCNNGG 7 cut(s) 192, 297, 375, 457, 458, 662, 850
BsaXI ACNNNNNCTCC 6 cut(s) 62, 92, 221, 251, 299, 329
Bsc4I CCNNNNNNNGG 4 cut(s) 324, 349, 712, 856
Bse1I ACTGG 1 cut(s) 358
BseBI CCWGG 1 cut(s) 459
BseDI CCNNGG 7 cut(s) 192, 297, 375, 457, 458, 662, 850
BseGI GGATG 2 cut(s) 102, 619
BseLI CCNNNNNNNGG 4 cut(s) 324, 349, 712, 856
BseMII CTCAG 4 cut(s) 269, 486, 564, 612
BseNI ACTGG 1 cut(s) 358
BseRI GAGGAG 2 cut(s) 99, 335
BseXI GCAGC 3 cut(s) 504, 755, 872
BseYI CCCAGC 1 cut(s) 689
Bsh1236I CGCG 3 cut(s) 215, 282, 364
Bsh1285I CGRYCG 2 cut(s) 162, 286
BshFI GGCC 1 cut(s) 177
BsiEI CGRYCG 2 cut(s) 162, 286
BsiHKAI GWGCWC 1 cut(s) 423
BsiHKCI CYCGRG 2 cut(s) 337, 374
BslFI GGGAC 1 cut(s) 562
BslI CCNNNNNNNGG 4 cut(s) 324, 349, 712, 856
BsmAI GTCTC 3 cut(s) 157, 491, 536
BsmBI CGTCTC 2 cut(s) 157, 491
BsmFI GGGAC 1 cut(s) 562
BsmI GAATGC 1 cut(s) 288
BsnI GGCC 1 cut(s) 177
BsoBI CYCGRG 2 cut(s) 337, 374
Bsp119I TTCGAA 2 cut(s) 16, 766
Bsp1286I GDGCHC 1 cut(s) 423
Bsp143I GATC 3 cut(s) 159, 309, 846
Bsp19I CCATGG 1 cut(s) 192
BspACI CCGC 8 cut(s) 134, 145, 197, 201, 250, 286, 305, 594
BspANI GGCC 1 cut(s) 177
BspCNI CTCAG 4 cut(s) 268, 487, 565, 611
BspFNI CGCG 3 cut(s) 215, 282, 364
BspPI GGATC 1 cut(s) 841
BspT104I TTCGAA 2 cut(s) 16, 766
BsrBI CCGCTC 3 cut(s) 147, 252, 594
BsrI ACTGG 1 cut(s) 358
BssECI CCNNGG 7 cut(s) 192, 297, 375, 457, 458, 662, 850
BssMI GATC 3 cut(s) 159, 309, 846
BssT1I CCWWGG 2 cut(s) 192, 662
Bst2UI CCWGG 1 cut(s) 459
Bst4CI ACNGT 2 cut(s) 23, 508
Bst6I CTCTTC 4 cut(s) 92, 258, 811, 819
BstBI TTCGAA 2 cut(s) 16, 766
BstC8I GCNNGC 3 cut(s) 199, 435, 522
BstDEI CTNAG 5 cut(s) 255, 495, 573, 598, 812
BstDSI CCRYGG 2 cut(s) 192, 297
BstF5I GGATG 2 cut(s) 102, 619
BstFNI CGCG 3 cut(s) 215, 282, 364
BstHHI GCGC 3 cut(s) 217, 282, 783
BstKTI GATC 3 cut(s) 162, 312, 849
BstMAI GTCTC 3 cut(s) 157, 491, 536
BstMBI GATC 3 cut(s) 159, 309, 846
BstMCI CGRYCG 2 cut(s) 162, 286
BstMWI GCNNNNNNNGC 3 cut(s) 302, 418, 559
BstNI CCWGG 1 cut(s) 459
BstSCI CCNGG 1 cut(s) 457
BstUI CGCG 3 cut(s) 215, 282, 364
BstV1I GCAGC 3 cut(s) 504, 755, 872
BstV2I GAAGAC 1 cut(s) 627
BstX2I RGATCY 1 cut(s) 846
BstYI RGATCY 1 cut(s) 846
BsuRI GGCC 1 cut(s) 177
BtgI CCRYGG 2 cut(s) 192, 297
BtsCI GGATG 2 cut(s) 102, 619
BtsI GCAGTG 1 cut(s) 275
BtsIMutI CAGTG 2 cut(s) 275, 564
Cac8I GCNNGC 3 cut(s) 199, 435, 522
CfoI GCGC 3 cut(s) 217, 282, 783
CseI GACGC 2 cut(s) 508, 559
CviAII CATG 4 cut(s) 193, 479, 646, 740
DdeI CTNAG 5 cut(s) 255, 495, 573, 598, 812
DpnI GATC 3 cut(s) 161, 311, 848
DpnII GATC 3 cut(s) 159, 309, 846
Eam1104I CTCTTC 4 cut(s) 92, 258, 811, 819
EarI CTCTTC 4 cut(s) 92, 258, 811, 819
EciI GGCGGA 1 cut(s) 320
Ecl136II GAGCTC 1 cut(s) 421
Eco130I CCWWGG 2 cut(s) 192, 662
Eco24I GRGCYC 1 cut(s) 423
Eco32I GATATC 1 cut(s) 476
Eco53kI GAGCTC 1 cut(s) 421
Eco57I CTGAAG 2 cut(s) 434, 588
Eco88I CYCGRG 2 cut(s) 337, 374
EcoICRI GAGCTC 1 cut(s) 421
EcoRII CCWGG 1 cut(s) 457
EcoRV GATATC 1 cut(s) 476
EcoT14I CCWWGG 2 cut(s) 192, 662
EcoT22I ATGCAT 1 cut(s) 534
EcoT38I GRGCYC 1 cut(s) 423
ErhI CCWWGG 2 cut(s) 192, 662
Esp3I CGTCTC 2 cut(s) 157, 491
FaeI CATG 4 cut(s) 196, 482, 649, 743
FalI AAGNNNNNCTT 2 cut(s) 612, 644
FaqI GGGAC 1 cut(s) 562
FatI CATG 4 cut(s) 192, 478, 645, 739
FauI CCCGC 1 cut(s) 190
Fnu4HI GCNGC 6 cut(s) 518, 595, 744, 861, 888, 891
FokI GGATG 2 cut(s) 89, 626
FriOI GRGCYC 1 cut(s) 423
Fsp4HI GCNGC 6 cut(s) 518, 595, 744, 861, 888, 891
FspBI CTAG 2 cut(s) 324, 663
FspI TGCGCA 1 cut(s) 782
GlaI GCGC 3 cut(s) 216, 281, 782
GluI GCNGC 6 cut(s) 518, 595, 744, 861, 888, 891
GsaI CCCAGC 1 cut(s) 693
GsuI CTGGAG 1 cut(s) 248
HaeIII GGCC 1 cut(s) 177
HgaI GACGC 2 cut(s) 508, 559
HhaI GCGC 3 cut(s) 217, 282, 783
Hin1II CATG 4 cut(s) 196, 482, 649, 743
Hin6I GCGC 3 cut(s) 215, 280, 781
HinP1I GCGC 3 cut(s) 215, 280, 781
HincII GTYRAC 1 cut(s) 676
HindII GTYRAC 1 cut(s) 676
HinfI GANTC 3 cut(s) 266, 314, 872
HpaI GTTAAC 1 cut(s) 676
HphI GGTGA 6 cut(s) 123, 178, 215, 347, 494, 727
Hpy166II GTNNAC 5 cut(s) 206, 318, 355, 676, 832
Hpy188I TCNGA 5 cut(s) 159, 496, 601, 752, 851
Hpy188III TCNNGA 3 cut(s) 227, 270, 611
Hpy8I GTNNAC 5 cut(s) 206, 318, 355, 676, 832
HpyAV CCTTC 4 cut(s) 83, 193, 409, 757
HpyCH4III ACNGT 2 cut(s) 23, 508
HpyCH4V TGCA 3 cut(s) 532, 562, 743
HpyF10VI GCNNNNNNNGC 3 cut(s) 302, 418, 559
HpyF3I CTNAG 5 cut(s) 255, 495, 573, 598, 812
Hsp92II CATG 4 cut(s) 196, 482, 649, 743
HspAI GCGC 3 cut(s) 215, 280, 781
KspAI GTTAAC 1 cut(s) 676
Kzo9I GATC 3 cut(s) 159, 309, 846
LmnI GCTCC 3 cut(s) 50, 152, 418
LpnPI CCDG 9 cut(s) 159, 178, 212, 371, 444, 471, 531, 596, 675
Lsp1109I GCAGC 3 cut(s) 504, 755, 872
MaeI CTAG 2 cut(s) 324, 663
MaeIII GTNAC 2 cut(s) 23, 682
MalI GATC 3 cut(s) 161, 311, 848
MbiI CCGCTC 3 cut(s) 147, 252, 594
MboI GATC 3 cut(s) 159, 309, 846
MboII GAAGA 7 cut(s) 22, 79, 275, 632, 755, 828, 836
MflI RGATCY 1 cut(s) 846
MhlI GDGCHC 1 cut(s) 423
MluCI AATT 5 cut(s) 168, 402, 441, 602, 788
MlyI GAGTC 2 cut(s) 275, 323
MmeI TCCRAC 1 cut(s) 775
Mph1103I ATGCAT 1 cut(s) 534
MroXI GAANNNNTTC 1 cut(s) 236
MseI TTAA 2 cut(s) 50, 675
MslI CAYNNNNRTG 1 cut(s) 191
MspA1I CMGCKG 1 cut(s) 689
MspR9I CCNGG 1 cut(s) 459
Mva1269I GAATGC 1 cut(s) 288
MvaI CCWGG 1 cut(s) 459
MvnI CGCG 3 cut(s) 215, 282, 364
MwoI GCNNNNNNNGC 3 cut(s) 302, 418, 559
NcoI CCATGG 1 cut(s) 192
NdeII GATC 3 cut(s) 159, 309, 846
NlaIII CATG 4 cut(s) 196, 482, 649, 743
NmuCI GTSAC 1 cut(s) 682
NsbI TGCGCA 1 cut(s) 782
NsiI ATGCAT 1 cut(s) 534
NspV TTCGAA 2 cut(s) 16, 766
PaeR7I CTCGAG 1 cut(s) 337
PasI CCCWGGG 1 cut(s) 458
PctI GAATGC 1 cut(s) 288
PdmI GAANNNNTTC 1 cut(s) 236
PfeI GAWTC 1 cut(s) 872
PkrI GCNGC 6 cut(s) 519, 596, 745, 862, 889, 892
Ple19I CGATCG 1 cut(s) 162
PleI GAGTC 2 cut(s) 274, 322
PpsI GAGTC 2 cut(s) 274, 322
Psp124BI GAGCTC 1 cut(s) 423
Psp6I CCWGG 1 cut(s) 457
PspFI CCCAGC 1 cut(s) 689
PspGI CCWGG 1 cut(s) 457
PspXI VCTCGAGB 1 cut(s) 337
PsuI RGATCY 1 cut(s) 846
PvuI CGATCG 1 cut(s) 162
PvuII CAGCTG 1 cut(s) 689
RseI CAYNNNNRTG 1 cut(s) 191
SacI GAGCTC 1 cut(s) 423
SaqAI TTAA 2 cut(s) 50, 675
SatI GCNGC 6 cut(s) 518, 595, 744, 861, 888, 891
Sau3AI GATC 3 cut(s) 159, 309, 846
SchI GAGTC 2 cut(s) 275, 323
ScrFI CCNGG 1 cut(s) 459
SduI GDGCHC 1 cut(s) 423
Sfr274I CTCGAG 1 cut(s) 337
SfuI TTCGAA 2 cut(s) 16, 766
SlaI CTCGAG 1 cut(s) 337
SmiMI CAYNNNNRTG 1 cut(s) 191
SmlI CTYRAG 1 cut(s) 337
SmoI CTYRAG 1 cut(s) 337
Sse9I AATT 5 cut(s) 168, 402, 441, 602, 788
SsiI CCGC 8 cut(s) 134, 145, 197, 201, 250, 286, 305, 594
SspMI CTAG 2 cut(s) 324, 663
SstI GAGCTC 1 cut(s) 423
StyD4I CCNGG 1 cut(s) 457
StyI CCWWGG 2 cut(s) 192, 662
TaaI ACNGT 2 cut(s) 23, 508
TaqI TCGA 7 cut(s) 16, 240, 261, 292, 312, 338, 766
TasI AATT 5 cut(s) 168, 402, 441, 602, 788
TauI GCSGC 1 cut(s) 597
TfiI GAWTC 1 cut(s) 872
Tru1I TTAA 2 cut(s) 50, 675
Tru9I TTAA 2 cut(s) 50, 675
TscAI CASTG 2 cut(s) 282, 571
TseFI GTSAC 1 cut(s) 682
TseI GCWGC 5 cut(s) 517, 743, 860, 887, 890
Tsp45I GTSAC 1 cut(s) 682
TspDTI ATGAA 5 cut(s) 17, 634, 669, 734, 815
TspGWI ACGGA 2 cut(s) 111, 139
TspRI CASTG 2 cut(s) 282, 571
XapI RAATTY 3 cut(s) 168, 602, 788
XcmI CCANNNNNNNNNTGG 1 cut(s) 686
XhoI CTCGAG 1 cut(s) 337
XmaJI CCTAGG 1 cut(s) 662
XmnI GAANNNNTTC 1 cut(s) 236
XspI CTAG 2 cut(s) 324, 663
Zsp2I ATGCAT 1 cut(s) 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.