Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0005043

Physical Location & Seq

Genomic Coordinates Reverse (-)

2550776 .. 2552803

Gene Structure 2028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG014000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGCGGGTGGTGAACCCCATGCGCTTCCACTTCTGGAGAAGCAGTTTGATGACTTCCGCTCTCAGCTTGAAGAGTCTGGAACACTGGGCGATCGCATTCGAGCCGTGGTCATGGAGATCGAGTCCACCACTAGCTCCGTTCAAACGAAAAGCTGTAGGGTTCATCTCATATGCCAACCATCGAAGGAATATTCAAATAAGATTGTAATGGTGACTGAACCTGCCCATGAGAGTGGTATGTTGATACGAATGCCGAGCAATAAGCTACCGAAAGGTAGGCATTTGATTGGGGATAGCGTGGTTTACGATGTGGGAGTTTGGTTGCCCCGGGAGTTTCAGCTGCAGGCTGCAGCTAGAAGTTACCCTTATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Translin

Protein Analysis

124

Amino Acids

13.9

Weight (kDa)

6.41

Isoelectric Point (pI)

62.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37020 AT2G37020 AT2G37020
fragaria_vesca	FvH4_6g16140 FvH4_6g16140 FvH4_6g16140 FvH4_6g16140
malus_domestica	MD12G1115500.v1.1
prunus_persica	Prupe.6G234600_v2.0.a1
pyrus_communis	pycom12g11490
rosa_chinensis	RchiOBHm_Chr1g0341651 RchiOBHm_Chr3g0469981 RchiOBHm_Chr4g0411411
rosa_laevigata	RLG00000024307
rosa_multiflora	Rmu_sc0004149.1_g000011 Rmu_sc0007963.1_g000002 Rmu_sc0020091.1_g000003 Rmu_ssc0000233.1_g000073
rosa_roxburghii	Rroxscaffold_1G00028150 Rroxscaffold_6G00411320
rosa_rugosa	Rorug03G0105900
rosa_samantha	Rh3AG154900 Rh3BG179000 Rh3CG169600 Rh3DG196200 Rh4AG014000 Rh4AG167700 Rh7AG386500 Rh7CG405800
rosa_wichuraiana	Rw3G014590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	229
AccBSI	CCGCTC	1 cut(s)	60
AciI	CCGC	2 cut(s)	5, 58
AgsI	TTSAA	3 cut(s)	71, 143, 195
AluBI	AGCT	6 cut(s)	67, 135, 153, 265, 340, 353
AluI	AGCT	6 cut(s)	67, 135, 153, 265, 340, 353
Ama87I	CYCGRG	1 cut(s)	327
ApeKI	GCWGC	3 cut(s)	340, 347, 350
AsiSI	GCGATCGC	1 cut(s)	94
AspLEI	GCGC	1 cut(s)	25
AsuC2I	CCSGG	2 cut(s)	328, 329
AsuHPI	GGTGA	2 cut(s)	23, 223
AvaI	CYCGRG	1 cut(s)	327
BbvI	GCAGC	3 cut(s)	327, 334, 362
BccI	CCATC	1 cut(s)	187
BceAI	ACGGC	1 cut(s)	89
BcnI	CCSGG	2 cut(s)	328, 329
BfaI	CTAG	2 cut(s)	132, 354
BfmI	CTRYAG	3 cut(s)	154, 341, 348
BfuAI	ACCTGC	1 cut(s)	229
BisI	GCNGC	3 cut(s)	341, 348, 351
BlsI	GCNGC	3 cut(s)	342, 349, 352
Bme1390I	CCNGG	2 cut(s)	328, 329
BmeT110I	CYCGRG	1 cut(s)	327
BmrFI	CCNGG	2 cut(s)	328, 329
BmrI	ACTGGG	1 cut(s)	95
BmuI	ACTGGG	1 cut(s)	95
BpmI	CTGGAG	1 cut(s)	56
BpuMI	CCSGG	2 cut(s)	328, 329
BsaJI	CCNNGG	3 cut(s)	105, 326, 327
BsaXI	ACNNNNNCTCC	4 cut(s)	29, 59, 107, 137
Bse1I	ACTGG	1 cut(s)	90
BseDI	CCNNGG	3 cut(s)	105, 326, 327
BseMII	CTCAG	1 cut(s)	77
BseNI	ACTGG	1 cut(s)	90
BseXI	GCAGC	3 cut(s)	327, 334, 362
Bsh1285I	CGRYCG	1 cut(s)	94
BsiEI	CGRYCG	1 cut(s)	94
BsiHKCI	CYCGRG	1 cut(s)	327
BsiSI	CCGG	1 cut(s)	328
BsmI	GAATGC	2 cut(s)	96, 255
BsoBI	CYCGRG	1 cut(s)	327
Bsp143I	GATC	2 cut(s)	91, 117
BspACI	CCGC	2 cut(s)	5, 58
BspCNI	CTCAG	1 cut(s)	76
BspMAI	CTGCAG	2 cut(s)	345, 352
BspMI	ACCTGC	1 cut(s)	229
BsrBI	CCGCTC	1 cut(s)	60
BsrI	ACTGG	1 cut(s)	90
BssECI	CCNNGG	3 cut(s)	105, 326, 327
BssMI	GATC	2 cut(s)	91, 117
Bst6I	CTCTTC	1 cut(s)	66
BstC8I	GCNNGC	1 cut(s)	345
BstDEI	CTNAG	1 cut(s)	63
BstDSI	CCRYGG	1 cut(s)	105
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	2 cut(s)	94, 120
BstMBI	GATC	2 cut(s)	91, 117
BstMCI	CGRYCG	1 cut(s)	94
BstSCI	CCNGG	2 cut(s)	326, 327
BstSFI	CTRYAG	3 cut(s)	154, 341, 348
BstV1I	GCAGC	3 cut(s)	327, 334, 362
BstXI	CCANNNNNNTGG	1 cut(s)	233
BtgI	CCRYGG	1 cut(s)	105
BtsIMutI	CAGTG	1 cut(s)	83
BveI	ACCTGC	1 cut(s)	229
Cac8I	GCNNGC	1 cut(s)	345
CfoI	GCGC	1 cut(s)	25
Cfr9I	CCCGGG	1 cut(s)	327
CviAII	CATG	3 cut(s)	20, 112, 227
CviJI	RGCY	8 cut(s)	67, 104, 135, 153, 265, 340, 347, 353
CviKI_1	RGCY	8 cut(s)	67, 104, 135, 153, 265, 340, 347, 353
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	2 cut(s)	93, 119
DpnII	GATC	2 cut(s)	91, 117
Eam1104I	CTCTTC	1 cut(s)	66
EarI	CTCTTC	1 cut(s)	66
Eco88I	CYCGRG	1 cut(s)	327
FaeI	CATG	3 cut(s)	23, 115, 230
FaiI	YATR	7 cut(s)	21, 113, 170, 172, 228, 239, 369
FalI	AAGNNNNNCTT	1 cut(s)	349
FatI	CATG	3 cut(s)	19, 111, 226
FauNDI	CATATG	1 cut(s)	170
Fnu4HI	GCNGC	3 cut(s)	341, 348, 351
Fsp4HI	GCNGC	3 cut(s)	341, 348, 351
FspBI	CTAG	2 cut(s)	132, 354
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	3 cut(s)	341, 348, 351
GsuI	CTGGAG	1 cut(s)	56
HapII	CCGG	1 cut(s)	328
HhaI	GCGC	1 cut(s)	25
Hin1II	CATG	3 cut(s)	23, 115, 230
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HinfI	GANTC	2 cut(s)	74, 122
HpaII	CCGG	1 cut(s)	328
HphI	GGTGA	2 cut(s)	23, 223
Hpy166II	GTNNAC	3 cut(s)	14, 126, 304
Hpy188III	TCNNGA	2 cut(s)	35, 78
Hpy8I	GTNNAC	3 cut(s)	14, 126, 304
HpyAV	CCTTC	1 cut(s)	178
HpyCH4V	TGCA	2 cut(s)	343, 350
HpyF3I	CTNAG	1 cut(s)	63
Hsp92II	CATG	3 cut(s)	23, 115, 230
HspAI	GCGC	1 cut(s)	23
Kzo9I	GATC	2 cut(s)	91, 117
LmnI	GCTCC	1 cut(s)	140
LpnPI	CCDG	6 cut(s)	20, 63, 71, 234, 329, 341
Lsp1109I	GCAGC	3 cut(s)	327, 334, 362
MaeI	CTAG	2 cut(s)	132, 354
MaeIII	GTNAC	2 cut(s)	211, 359
MalI	GATC	2 cut(s)	93, 119
MbiI	CCGCTC	1 cut(s)	60
MboI	GATC	2 cut(s)	91, 117
MboII	GAAGA	1 cut(s)	83
MlyI	GAGTC	2 cut(s)	83, 131
MseI	TTAA	1 cut(s)	373
MslI	CAYNNNNRTG	1 cut(s)	231
MspA1I	CMGCKG	1 cut(s)	340
MspI	CCGG	1 cut(s)	328
MspR9I	CCNGG	2 cut(s)	328, 329
Mva1269I	GAATGC	2 cut(s)	96, 255
NciI	CCSGG	2 cut(s)	328, 329
NdeI	CATATG	1 cut(s)	170
NdeII	GATC	2 cut(s)	91, 117
NlaIII	CATG	3 cut(s)	23, 115, 230
NmeAIII	GCCGAG	1 cut(s)	279
NmuCI	GTSAC	1 cut(s)	211
PctI	GAATGC	2 cut(s)	96, 255
PkrI	GCNGC	3 cut(s)	342, 349, 352
Ple19I	CGATCG	1 cut(s)	94
PleI	GAGTC	2 cut(s)	82, 130
PpsI	GAGTC	2 cut(s)	82, 130
PstI	CTGCAG	2 cut(s)	345, 352
PvuI	CGATCG	1 cut(s)	94
PvuII	CAGCTG	1 cut(s)	340
RgaI	GCGATCGC	1 cut(s)	94
RseI	CAYNNNNRTG	1 cut(s)	231
SaqAI	TTAA	1 cut(s)	373
SatI	GCNGC	3 cut(s)	341, 348, 351
Sau3AI	GATC	2 cut(s)	91, 117
SchI	GAGTC	2 cut(s)	83, 131
ScrFI	CCNGG	2 cut(s)	328, 329
SetI	ASST	8 cut(s)	69, 137, 155, 223, 267, 277, 342, 355
SfaAI	GCGATCGC	1 cut(s)	94
SfcI	CTRYAG	3 cut(s)	154, 341, 348
SgfI	GCGATCGC	1 cut(s)	94
SmaI	CCCGGG	1 cut(s)	329
SmiMI	CAYNNNNRTG	1 cut(s)	231
SsiI	CCGC	2 cut(s)	5, 58
SspI	AATATT	1 cut(s)	191
SspMI	CTAG	2 cut(s)	132, 354
StyD4I	CCNGG	2 cut(s)	326, 327
TaqI	TCGA	3 cut(s)	100, 120, 182
Tru1I	TTAA	1 cut(s)	373
Tru9I	TTAA	1 cut(s)	373
TscAI	CASTG	1 cut(s)	90
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	3 cut(s)	340, 347, 350
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	1 cut(s)	152
TspGWI	ACGGA	1 cut(s)	127
TspMI	CCCGGG	1 cut(s)	327
TspRI	CASTG	1 cut(s)	90
XmaI	CCCGGG	1 cut(s)	327
XspI	CTAG	2 cut(s)	132, 354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.