Rmu_sc0004149.1_g000011

Translin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004149.1
OG0005043
Physical Location & Seq
Reverse (-)
60157 .. 61558
1402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004149.1_g000011.1.cds

Sequence Viewer

Length: 714 bp
atgaatgtggatttgaaattatggctaacatcggtgggtcgtatggttctgagaatgtctggttctgagggccaaatggtcgaatgggtcggtgggattttgagaatgtctggttctgagggccaaatggttaggagaattaaggtggtgatcgagttgggtagtgttgcggtgttaagagcagcactaagtttatttcggtgtgttttgtatgctcctatgagcttaacttttattcaatgttctaaaactcggcagcccaggcagcctaggcggcacctctccaccgcgagtaatgacaaatctgggtccgtctctccgatcgctagaattttcagcctttccttcacctccatggagggcggtgaaccccacgcgcttccacttctagagaagcatttcgatgacttccgctctcagctcgaagagtccagaacactgcgcggccacattccaatcgtggtaatggagatcgagtctaccactaggtttattcactcgagcctcctcttggttcaccagtcacgttcaactcccgcacctgctacaacaccattttgtatgcgttttccaatttgtgatttttgtgattgtttattggttaaagaagaggttttggagaagccaaaggctaaaattattgtgctgaaggagctctacaatcaactcactgaaattgtgcgaattgagcgttcgggttttcgtggaaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Translin

Protein Analysis

237

Amino Acids

26.72

Weight (kDa)

9.43

Isoelectric Point (pI)

60.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 550
Acc36I ACCTGC 1 cut(s) 550
AccB1I GGYRCC 1 cut(s) 276
AccBSI CCGCTC 1 cut(s) 414
AccI GTMKAC 1 cut(s) 479
AccII CGCG 3 cut(s) 290, 377, 444
AciI CCGC 7 cut(s) 170, 274, 288, 363, 412, 444, 537
AcoI YGGCCR 1 cut(s) 445
AcsI RAATTY 1 cut(s) 330
AcuI CTGAAG 1 cut(s) 668
AfiI CCNNNNNNNGG 1 cut(s) 511
AgsI TTSAA 3 cut(s) 16, 239, 531
AjnI CCWGG 1 cut(s) 260
AluBI AGCT 3 cut(s) 225, 421, 655
AluI AGCT 3 cut(s) 225, 421, 655
Alw21I GWGCWC 1 cut(s) 657
Alw26I GTCTC 1 cut(s) 319
Ama87I CYCGRG 1 cut(s) 499
AoxI GGCC 3 cut(s) 70, 121, 445
ApeKI GCWGC 3 cut(s) 182, 256, 265
ApoI RAATTY 1 cut(s) 330
Asp700I GAANNNNTTC 1 cut(s) 398
AspA2I CCTAGG 1 cut(s) 269
AspLEI GCGC 2 cut(s) 379, 444
AspS9I GGNCC 3 cut(s) 70, 121, 309
AsuHPI GGTGA 4 cut(s) 160, 340, 377, 509
AvaI CYCGRG 1 cut(s) 499
AvaII GGWCC 1 cut(s) 309
AvrII CCTAGG 1 cut(s) 269
BanI GGYRCC 1 cut(s) 276
BanII GRGCYC 1 cut(s) 657
BarI GAAGNNNNNNTAC 2 cut(s) 641, 673
Bbv12I GWGCWC 1 cut(s) 657
BbvI GCAGC 3 cut(s) 194, 268, 277
BciT130I CCWGG 1 cut(s) 262
BcoDI GTCTC 1 cut(s) 319
BfaI CTAG 4 cut(s) 270, 327, 389, 486
BfuAI ACCTGC 1 cut(s) 550
BglI GCCNNNNNGGC 1 cut(s) 274
BisI GCNGC 5 cut(s) 183, 257, 266, 275, 445
BlnI CCTAGG 1 cut(s) 269
BlsI GCNGC 5 cut(s) 184, 258, 267, 276, 446
Bme1390I CCNGG 1 cut(s) 262
Bme18I GGWCC 1 cut(s) 309
BmeT110I CYCGRG 1 cut(s) 499
BmgT120I GGNCC 3 cut(s) 70, 121, 309
BmiI GGNNCC 2 cut(s) 278, 310
BmrFI CCNGG 1 cut(s) 262
BsaJI CCNNGG 3 cut(s) 260, 269, 354
BsaXI ACNNNNNCTCC 2 cut(s) 461, 491
Bsc4I CCNNNNNNNGG 1 cut(s) 511
Bse1I ACTGG 1 cut(s) 520
BseBI CCWGG 1 cut(s) 262
BseDI CCNNGG 3 cut(s) 260, 269, 354
BseLI CCNNNNNNNGG 1 cut(s) 511
BseMII CTCAG 4 cut(s) 41, 57, 108, 431
BseNI ACTGG 1 cut(s) 520
BseRI GAGGAG 1 cut(s) 497
BseXI GCAGC 3 cut(s) 194, 268, 277
Bsh1236I CGCG 3 cut(s) 290, 377, 444
Bsh1285I CGRYCG 1 cut(s) 324
BshFI GGCC 3 cut(s) 72, 123, 447
BshNI GGYRCC 1 cut(s) 276
BsiEI CGRYCG 1 cut(s) 324
BsiHKAI GWGCWC 1 cut(s) 657
BsiHKCI CYCGRG 1 cut(s) 499
BslI CCNNNNNNNGG 1 cut(s) 511
BsmAI GTCTC 1 cut(s) 319
BsmBI CGTCTC 1 cut(s) 319
BsnI GGCC 3 cut(s) 72, 123, 447
BsoBI CYCGRG 1 cut(s) 499
Bsp1286I GDGCHC 1 cut(s) 657
Bsp143I GATC 3 cut(s) 150, 321, 471
Bsp19I CCATGG 1 cut(s) 354
BspACI CCGC 7 cut(s) 170, 274, 288, 363, 412, 444, 537
BspANI GGCC 3 cut(s) 72, 123, 447
BspCNI CTCAG 4 cut(s) 42, 58, 109, 430
BspFNI CGCG 3 cut(s) 290, 377, 444
BspLI GGNNCC 2 cut(s) 278, 310
BspMI ACCTGC 1 cut(s) 550
BspT107I GGYRCC 1 cut(s) 276
BsrBI CCGCTC 1 cut(s) 414
BsrI ACTGG 1 cut(s) 520
BssECI CCNNGG 3 cut(s) 260, 269, 354
BssMI GATC 3 cut(s) 150, 321, 471
BssT1I CCWWGG 2 cut(s) 269, 354
Bst2UI CCWGG 1 cut(s) 262
Bst6I CTCTTC 2 cut(s) 420, 603
BstDEI CTNAG 5 cut(s) 50, 66, 117, 188, 417
BstDSI CCRYGG 1 cut(s) 354
BstFNI CGCG 3 cut(s) 290, 377, 444
BstHHI GCGC 2 cut(s) 379, 444
BstKTI GATC 3 cut(s) 153, 324, 474
BstMAI GTCTC 1 cut(s) 319
BstMBI GATC 3 cut(s) 150, 321, 471
BstMCI CGRYCG 1 cut(s) 324
BstMWI GCNNNNNNNGC 6 cut(s) 262, 265, 271, 274, 652, 688
BstNI CCWGG 1 cut(s) 262
BstSCI CCNGG 1 cut(s) 260
BstUI CGCG 3 cut(s) 290, 377, 444
BstV1I GCAGC 3 cut(s) 194, 268, 277
BsuRI GGCC 3 cut(s) 72, 123, 447
BtgI CCRYGG 1 cut(s) 354
BtsI GCAGTG 1 cut(s) 437
BtsIMutI CAGTG 2 cut(s) 437, 669
BveI ACCTGC 1 cut(s) 550
CfoI GCGC 2 cut(s) 379, 444
Cfr13I GGNCC 3 cut(s) 70, 121, 309
CviAII CATG 1 cut(s) 355
DdeI CTNAG 5 cut(s) 50, 66, 117, 188, 417
DpnI GATC 3 cut(s) 152, 323, 473
DpnII GATC 3 cut(s) 150, 321, 471
EaeI YGGCCR 1 cut(s) 445
Eam1104I CTCTTC 2 cut(s) 420, 603
EarI CTCTTC 2 cut(s) 420, 603
Ecl136II GAGCTC 1 cut(s) 655
Eco130I CCWWGG 2 cut(s) 269, 354
Eco24I GRGCYC 1 cut(s) 657
Eco47I GGWCC 1 cut(s) 309
Eco53kI GAGCTC 1 cut(s) 655
Eco57I CTGAAG 1 cut(s) 668
Eco88I CYCGRG 1 cut(s) 499
EcoICRI GAGCTC 1 cut(s) 655
EcoRII CCWGG 1 cut(s) 260
EcoT14I CCWWGG 2 cut(s) 269, 354
EcoT38I GRGCYC 1 cut(s) 657
ErhI CCWWGG 2 cut(s) 269, 354
Esp3I CGTCTC 1 cut(s) 319
FaeI CATG 1 cut(s) 358
FaiI YATR 6 cut(s) 22, 44, 213, 221, 356, 563
FatI CATG 1 cut(s) 354
FauI CCCGC 1 cut(s) 544
FblI GTMKAC 1 cut(s) 479
Fnu4HI GCNGC 5 cut(s) 183, 257, 266, 275, 445
FriOI GRGCYC 1 cut(s) 657
Fsp4HI GCNGC 5 cut(s) 183, 257, 266, 275, 445
FspBI CTAG 4 cut(s) 270, 327, 389, 486
GlaI GCGC 2 cut(s) 378, 443
GluI GCNGC 5 cut(s) 183, 257, 266, 275, 445
HaeIII GGCC 3 cut(s) 72, 123, 447
HhaI GCGC 2 cut(s) 379, 444
Hin1II CATG 1 cut(s) 358
Hin6I GCGC 2 cut(s) 377, 442
HinP1I GCGC 2 cut(s) 377, 442
HinfI GANTC 2 cut(s) 428, 476
HphI GGTGA 4 cut(s) 160, 340, 377, 509
Hpy166II GTNNAC 3 cut(s) 368, 480, 517
Hpy188I TCNGA 4 cut(s) 51, 67, 118, 321
Hpy188III TCNNGA 2 cut(s) 389, 432
Hpy8I GTNNAC 3 cut(s) 368, 480, 517
HpyAV CCTTC 2 cut(s) 355, 643
HpyCH4IV ACGT 1 cut(s) 526
HpyF10VI GCNNNNNNNGC 6 cut(s) 262, 265, 271, 274, 652, 688
HpyF3I CTNAG 5 cut(s) 50, 66, 117, 188, 417
HpySE526I ACGT 1 cut(s) 526
Hsp92II CATG 1 cut(s) 358
HspAI GCGC 2 cut(s) 377, 442
Kzo9I GATC 3 cut(s) 150, 321, 471
LmnI GCTCC 2 cut(s) 220, 652
LpnPI CCDG 8 cut(s) 45, 96, 247, 274, 291, 445, 533, 555
Lsp1109I GCAGC 3 cut(s) 194, 268, 277
MaeI CTAG 4 cut(s) 270, 327, 389, 486
MaeII ACGT 1 cut(s) 526
MaeIII GTNAC 1 cut(s) 522
MalI GATC 3 cut(s) 152, 323, 473
MbiI CCGCTC 1 cut(s) 414
MboI GATC 3 cut(s) 150, 321, 471
MboII GAAGA 2 cut(s) 437, 620
MhlI GDGCHC 1 cut(s) 657
MluCI AATT 8 cut(s) 17, 138, 330, 573, 636, 675, 684, 709
MlyI GAGTC 2 cut(s) 437, 485
MnlI CCTC 8 cut(s) 61, 112, 290, 352, 361, 515, 518, 604
MroXI GAANNNNTTC 1 cut(s) 398
MseI TTAA 4 cut(s) 141, 176, 227, 603
MslI CAYNNNNRTG 2 cut(s) 353, 402
MspR9I CCNGG 1 cut(s) 262
MvaI CCWGG 1 cut(s) 262
MvnI CGCG 3 cut(s) 290, 377, 444
MwoI GCNNNNNNNGC 6 cut(s) 262, 265, 271, 274, 652, 688
NcoI CCATGG 1 cut(s) 354
NdeII GATC 3 cut(s) 150, 321, 471
NlaIII CATG 1 cut(s) 358
NlaIV GGNNCC 2 cut(s) 278, 310
NmeAIII GCCGAG 1 cut(s) 232
NmuCI GTSAC 1 cut(s) 522
PaeR7I CTCGAG 1 cut(s) 499
PaqCI CACCTGC 1 cut(s) 550
PdmI GAANNNNTTC 1 cut(s) 398
PkrI GCNGC 5 cut(s) 184, 258, 267, 276, 446
Ple19I CGATCG 1 cut(s) 324
PleI GAGTC 2 cut(s) 436, 484
PpsI GAGTC 2 cut(s) 436, 484
Psp124BI GAGCTC 1 cut(s) 657
Psp6I CCWGG 1 cut(s) 260
PspGI CCWGG 1 cut(s) 260
PspN4I GGNNCC 2 cut(s) 278, 310
PspPI GGNCC 3 cut(s) 70, 121, 309
PspXI VCTCGAGB 1 cut(s) 499
PvuI CGATCG 1 cut(s) 324
RseI CAYNNNNRTG 2 cut(s) 353, 402
SacI GAGCTC 1 cut(s) 657
SaqAI TTAA 4 cut(s) 141, 176, 227, 603
SatI GCNGC 5 cut(s) 183, 257, 266, 275, 445
Sau3AI GATC 3 cut(s) 150, 321, 471
Sau96I GGNCC 3 cut(s) 70, 121, 309
SchI GAGTC 2 cut(s) 437, 485
ScrFI CCNGG 1 cut(s) 262
SduI GDGCHC 1 cut(s) 657
Sfr274I CTCGAG 1 cut(s) 499
SinI GGWCC 1 cut(s) 309
SlaI CTCGAG 1 cut(s) 499
SmiMI CAYNNNNRTG 2 cut(s) 353, 402
SmlI CTYRAG 1 cut(s) 499
SmoI CTYRAG 1 cut(s) 499
Sse9I AATT 8 cut(s) 17, 138, 330, 573, 636, 675, 684, 709
SsiI CCGC 7 cut(s) 170, 274, 288, 363, 412, 444, 537
SspMI CTAG 4 cut(s) 270, 327, 389, 486
SstI GAGCTC 1 cut(s) 657
StyD4I CCNGG 1 cut(s) 260
StyI CCWWGG 2 cut(s) 269, 354
TaiI ACGT 1 cut(s) 529
TaqI TCGA 6 cut(s) 81, 153, 402, 423, 474, 500
TasI AATT 8 cut(s) 17, 138, 330, 573, 636, 675, 684, 709
TauI GCSGC 2 cut(s) 277, 447
Tru1I TTAA 4 cut(s) 141, 176, 227, 603
Tru9I TTAA 4 cut(s) 141, 176, 227, 603
TscAI CASTG 2 cut(s) 444, 676
TseFI GTSAC 1 cut(s) 522
TseI GCWGC 3 cut(s) 182, 256, 265
Tsp45I GTSAC 1 cut(s) 522
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 301
TspRI CASTG 2 cut(s) 444, 676
VpaK11BI GGWCC 1 cut(s) 309
XapI RAATTY 1 cut(s) 330
XbaI TCTAGA 1 cut(s) 388
XhoI CTCGAG 1 cut(s) 499
XmaJI CCTAGG 1 cut(s) 269
XmiI GTMKAC 1 cut(s) 479
XmnI GAANNNNTTC 1 cut(s) 398
XspI CTAG 4 cut(s) 270, 327, 389, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.