FvH4_6g16140

Translin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0005043
Physical Location & Seq
Reverse (-)
10160977 .. 10163807
2831 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g16140.t2

Sequence Viewer

Length: 864 bp
ATGAAATCTGCGTTTCGAAACGGTTACTTCTTCACACTCTCTCGCTCCTTAAACCCTAACATTCCCTCCACTCTCTTCGCTCTCCATCTTATCCCTCCTCACTCACCTCCCTCCATCTCATCGCCACCGTTCCGCTCCGTATCTCCAATCGCCTTCATGGCCGGCGGTGAGCCCCACGCGCTCCCACCACTGGAGAAGCAGTTCGAGGACTTCCGCGCTCAGCTAGAAGAGTCCGGAACACTTCGCGACCGCATTCGAGCGGTGGTGATGGAGATCGAGTCCACCACTAGGCTTATTCACTCCGGCCTGCTCTTGGTTCACCAGTCGCGCTCAACGCCCGCAGAGGTTTTGGAGAAGCCGAAGACTCAAATTTCTGTGCTGAAGGAGCTCTACAATCGACTCGCTGAAATTGTGCGTGAAAGCCCCGGGAGATATTACAGATATCATGGTGATTGGAAGAGCGAGACGCAGACCGTGGTTTCGCTGCTTGCTTTTATGCATTGGTTAGAGACAGGGACGCTTTTGTTGCACACTGAAGCTGAGGAAACACTTGGGTTGAACGGCTCAGAATTTGGTCTCGATGTTGAAGACTATCTTGTTGGTATTTGTTTCATGTCCAATGAATTGCCTAGGTATGTGGTTAACCAAGTGACAGCTGGGGACTATGATTGCCCAAGAAAGGTGATGAAGTTTTTGACAGATCTCCATGCATCCTTCCGTCTGCTCAATCTTCGAAATGACTTTCTGCGCAAGAAATTTGATGGTATGAAGTATGATCTAAGAAGAGTTGAAGAGGTTTACTATGATGTAAAGATCCGAGGCTTGGCAGCCAATGGTGATTCTGTGGAAAAGCCAGCAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Translin

Protein Analysis

288

Amino Acids

32.66

Weight (kDa)

6.52

Isoelectric Point (pI)

51.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Translin PF01997 81 - 273 4.7e-57 Translin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 749
AccBSI CCGCTC 2 cut(s) 135, 260
AccII CGCG 4 cut(s) 179, 216, 246, 328
AccIII TCCGGA 1 cut(s) 233
AciI CCGC 6 cut(s) 133, 165, 214, 250, 260, 339
AclWI GGATC 1 cut(s) 808
AcoI YGGCCR 1 cut(s) 159
AcsI RAATTY 3 cut(s) 369, 569, 755
AcuI CTGAAG 2 cut(s) 401, 555
AfiI CCNNNNNNNGG 5 cut(s) 190, 288, 313, 679, 823
AgsI TTSAA 3 cut(s) 559, 587, 791
AloI GAACNNNNNNTCC 2 cut(s) 185, 217
AluBI AGCT 4 cut(s) 223, 388, 539, 656
AluI AGCT 4 cut(s) 223, 388, 539, 656
Alw21I GWGCWC 1 cut(s) 390
Alw26I GTCTC 3 cut(s) 458, 503, 581
AlwI GGATC 1 cut(s) 808
Ama87I CYCGRG 1 cut(s) 425
Aor13HI TCCGGA 1 cut(s) 233
AoxI GGCC 2 cut(s) 159, 304
ApeKI GCWGC 3 cut(s) 484, 827, 857
ApoI RAATTY 3 cut(s) 369, 569, 755
ArsI GACNNNNNNTTYG 2 cut(s) 463, 495
Asp700I GAANNNNTTC 1 cut(s) 200
AspA2I CCTAGG 1 cut(s) 629
AspLEI GCGC 4 cut(s) 181, 218, 330, 750
AsuC2I CCSGG 2 cut(s) 426, 427
AsuHPI GGTGA 7 cut(s) 96, 179, 277, 311, 461, 694, 848
AsuII TTCGAA 2 cut(s) 16, 733
AvaI CYCGRG 1 cut(s) 425
AvrII CCTAGG 1 cut(s) 629
BanII GRGCYC 2 cut(s) 174, 390
BarI GAAGNNNNNNTAC 2 cut(s) 374, 406
BbsI GAAGAC 2 cut(s) 368, 594
Bbv12I GWGCWC 1 cut(s) 390
BbvCI CCTCAGC 1 cut(s) 540
BbvI GCAGC 2 cut(s) 471, 839
BccI CCATC 4 cut(s) 93, 122, 262, 755
BceAI ACGGC 1 cut(s) 577
BcnI CCSGG 2 cut(s) 426, 427
BcoDI GTCTC 3 cut(s) 458, 503, 581
BfaI CTAG 3 cut(s) 224, 288, 630
BglI GCCNNNNNGGC 1 cut(s) 158
BglII AGATCT 1 cut(s) 700
BisI GCNGC 3 cut(s) 485, 828, 858
BlnI CCTAGG 1 cut(s) 629
BlpI GCTNAGC 1 cut(s) 219
BlsI GCNGC 3 cut(s) 486, 829, 859
Bme1390I CCNGG 2 cut(s) 426, 427
BmeT110I CYCGRG 1 cut(s) 425
BmrFI CCNGG 2 cut(s) 426, 427
BmsI GCATC 1 cut(s) 719
BpiI GAAGAC 2 cut(s) 368, 594
BpmI CTGGAG 1 cut(s) 212
Bpu10I CCTNAGC 1 cut(s) 540
Bpu1102I GCTNAGC 1 cut(s) 219
Bpu14I TTCGAA 2 cut(s) 16, 733
BpuMI CCSGG 2 cut(s) 426, 427
BsaBI GATNNNNATC 1 cut(s) 272
BsaI GGTCTC 1 cut(s) 581
BsaJI CCNNGG 5 cut(s) 424, 425, 474, 629, 817
BsaWI WCCGGW 1 cut(s) 233
BsaXI ACNNNNNCTCC 6 cut(s) 50, 80, 185, 215, 263, 293
Bsc4I CCNNNNNNNGG 5 cut(s) 190, 288, 313, 679, 823
Bse118I RCCGGY 1 cut(s) 161
Bse1I ACTGG 2 cut(s) 195, 322
Bse8I GATNNNNATC 1 cut(s) 272
BseAI TCCGGA 1 cut(s) 233
BseDI CCNNGG 5 cut(s) 424, 425, 474, 629, 817
BseGI GGATG 1 cut(s) 710
BseJI GATNNNNATC 1 cut(s) 272
BseLI CCNNNNNNNGG 5 cut(s) 190, 288, 313, 679, 823
BseMII CTCAG 3 cut(s) 233, 531, 579
BseNI ACTGG 2 cut(s) 195, 322
BseRI GAGGAG 1 cut(s) 87
BseXI GCAGC 2 cut(s) 471, 839
BseYI CCCAGC 1 cut(s) 656
Bsh1236I CGCG 4 cut(s) 179, 216, 246, 328
Bsh1285I CGRYCG 1 cut(s) 250
BshFI GGCC 2 cut(s) 161, 306
BsiEI CGRYCG 1 cut(s) 250
BsiHKAI GWGCWC 1 cut(s) 390
BsiHKCI CYCGRG 1 cut(s) 425
BsiSI CCGG 4 cut(s) 162, 234, 303, 426
BslFI GGGAC 2 cut(s) 529, 674
BslI CCNNNNNNNGG 5 cut(s) 190, 288, 313, 679, 823
BsmAI GTCTC 3 cut(s) 458, 503, 581
BsmBI CGTCTC 1 cut(s) 458
BsmFI GGGAC 2 cut(s) 529, 674
BsmI GAATGC 1 cut(s) 252
BsnI GGCC 2 cut(s) 161, 306
Bso31I GGTCTC 1 cut(s) 581
BsoBI CYCGRG 1 cut(s) 425
Bsp119I TTCGAA 2 cut(s) 16, 733
Bsp1286I GDGCHC 2 cut(s) 174, 390
Bsp13I TCCGGA 1 cut(s) 233
Bsp143I GATC 4 cut(s) 273, 700, 775, 813
Bsp1720I GCTNAGC 1 cut(s) 219
Bsp68I TCGCGA 1 cut(s) 246
BspACI CCGC 6 cut(s) 133, 165, 214, 250, 260, 339
BspANI GGCC 2 cut(s) 161, 306
BspCNI CTCAG 3 cut(s) 232, 532, 578
BspEI TCCGGA 1 cut(s) 233
BspFNI CGCG 4 cut(s) 179, 216, 246, 328
BspPI GGATC 1 cut(s) 808
BspQI GCTCTTC 1 cut(s) 452
BspT104I TTCGAA 2 cut(s) 16, 733
BspTNI GGTCTC 1 cut(s) 581
BsrBI CCGCTC 2 cut(s) 135, 260
BsrFI RCCGGY 1 cut(s) 161
BsrI ACTGG 2 cut(s) 195, 322
BssAI RCCGGY 1 cut(s) 161
BssECI CCNNGG 5 cut(s) 424, 425, 474, 629, 817
BssMI GATC 4 cut(s) 273, 700, 775, 813
BssT1I CCWWGG 1 cut(s) 629
Bst4CI ACNGT 3 cut(s) 23, 129, 475
Bst6I CTCTTC 5 cut(s) 80, 222, 452, 778, 786
BstBI TTCGAA 2 cut(s) 16, 733
BstC8I GCNNGC 5 cut(s) 163, 308, 339, 489, 855
BstDEI CTNAG 4 cut(s) 219, 540, 565, 779
BstDSI CCRYGG 1 cut(s) 474
BstF5I GGATG 1 cut(s) 710
BstFNI CGCG 4 cut(s) 179, 216, 246, 328
BstHHI GCGC 4 cut(s) 181, 218, 330, 750
BstKTI GATC 4 cut(s) 276, 703, 778, 816
BstMAI GTCTC 3 cut(s) 458, 503, 581
BstMBI GATC 4 cut(s) 273, 700, 775, 813
BstMCI CGRYCG 1 cut(s) 250
BstMWI GCNNNNNNNGC 5 cut(s) 158, 178, 334, 385, 526
BstSCI CCNGG 2 cut(s) 424, 425
BstUI CGCG 4 cut(s) 179, 216, 246, 328
BstV1I GCAGC 2 cut(s) 471, 839
BstV2I GAAGAC 2 cut(s) 368, 594
BstX2I RGATCY 2 cut(s) 700, 813
BstYI RGATCY 2 cut(s) 700, 813
BsuRI GGCC 2 cut(s) 161, 306
BtgI CCRYGG 1 cut(s) 474
BtgZI GCGATG 1 cut(s) 105
BtsCI GGATG 1 cut(s) 710
BtsIMutI CAGTG 2 cut(s) 188, 531
BtuMI TCGCGA 1 cut(s) 246
Cac8I GCNNGC 5 cut(s) 163, 308, 339, 489, 855
CfoI GCGC 4 cut(s) 181, 218, 330, 750
Cfr10I RCCGGY 1 cut(s) 161
Cfr9I CCCGGG 1 cut(s) 425
CseI GACGC 2 cut(s) 475, 526
CviAII CATG 4 cut(s) 157, 446, 613, 707
DdeI CTNAG 4 cut(s) 219, 540, 565, 779
DpnI GATC 4 cut(s) 275, 702, 777, 815
DpnII GATC 4 cut(s) 273, 700, 775, 813
EaeI YGGCCR 1 cut(s) 159
Eam1104I CTCTTC 5 cut(s) 80, 222, 452, 778, 786
EarI CTCTTC 5 cut(s) 80, 222, 452, 778, 786
Ecl136II GAGCTC 1 cut(s) 388
Eco130I CCWWGG 1 cut(s) 629
Eco24I GRGCYC 2 cut(s) 174, 390
Eco31I GGTCTC 1 cut(s) 581
Eco32I GATATC 1 cut(s) 443
Eco53kI GAGCTC 1 cut(s) 388
Eco57I CTGAAG 2 cut(s) 401, 555
Eco88I CYCGRG 1 cut(s) 425
EcoICRI GAGCTC 1 cut(s) 388
EcoRV GATATC 1 cut(s) 443
EcoT14I CCWWGG 1 cut(s) 629
EcoT22I ATGCAT 2 cut(s) 501, 712
EcoT38I GRGCYC 2 cut(s) 174, 390
ErhI CCWWGG 1 cut(s) 629
Esp3I CGTCTC 1 cut(s) 458
FaeI CATG 4 cut(s) 160, 449, 616, 710
FalI AAGNNNNNCTT 2 cut(s) 579, 611
FaqI GGGAC 2 cut(s) 529, 674
FatI CATG 4 cut(s) 156, 445, 612, 706
FauI CCCGC 1 cut(s) 346
Fnu4HI GCNGC 3 cut(s) 485, 828, 858
FokI GGATG 1 cut(s) 697
FriOI GRGCYC 2 cut(s) 174, 390
Fsp4HI GCNGC 3 cut(s) 485, 828, 858
FspBI CTAG 3 cut(s) 224, 288, 630
FspI TGCGCA 1 cut(s) 749
GlaI GCGC 4 cut(s) 180, 217, 329, 749
GluI GCNGC 3 cut(s) 485, 828, 858
GsaI CCCAGC 1 cut(s) 660
GsuI CTGGAG 1 cut(s) 212
HaeIII GGCC 2 cut(s) 161, 306
HapII CCGG 4 cut(s) 162, 234, 303, 426
HgaI GACGC 2 cut(s) 475, 526
HhaI GCGC 4 cut(s) 181, 218, 330, 750
Hin1II CATG 4 cut(s) 160, 449, 616, 710
Hin6I GCGC 4 cut(s) 179, 216, 328, 748
HinP1I GCGC 4 cut(s) 179, 216, 328, 748
HincII GTYRAC 1 cut(s) 643
HindII GTYRAC 1 cut(s) 643
HinfI GANTC 5 cut(s) 230, 278, 364, 399, 839
HpaI GTTAAC 1 cut(s) 643
HpaII CCGG 4 cut(s) 162, 234, 303, 426
HphI GGTGA 7 cut(s) 96, 179, 277, 311, 461, 694, 848
Hpy166II GTNNAC 4 cut(s) 282, 319, 643, 799
Hpy188I TCNGA 2 cut(s) 568, 818
Hpy188III TCNNGA 3 cut(s) 234, 245, 578
Hpy8I GTNNAC 4 cut(s) 282, 319, 643, 799
HpyAV CCTTC 3 cut(s) 163, 376, 724
HpyCH4III ACNGT 3 cut(s) 23, 129, 475
HpyCH4V TGCA 3 cut(s) 499, 529, 710
HpyF10VI GCNNNNNNNGC 5 cut(s) 158, 178, 334, 385, 526
HpyF3I CTNAG 4 cut(s) 219, 540, 565, 779
Hsp92II CATG 4 cut(s) 160, 449, 616, 710
HspAI GCGC 4 cut(s) 179, 216, 328, 748
Kpn2I TCCGGA 1 cut(s) 233
KroI GCCGGC 1 cut(s) 161
KroNI GCCGGC 1 cut(s) 163
KspAI GTTAAC 1 cut(s) 643
Kzo9I GATC 4 cut(s) 273, 700, 775, 813
LguI GCTCTTC 1 cut(s) 452
LmnI GCTCC 4 cut(s) 50, 140, 186, 385
LpnPI CCDG 9 cut(s) 175, 176, 247, 316, 320, 335, 439, 498, 642
Lsp1109I GCAGC 2 cut(s) 471, 839
LweI GCATC 1 cut(s) 719
MaeI CTAG 3 cut(s) 224, 288, 630
MaeIII GTNAC 2 cut(s) 23, 649
MalI GATC 4 cut(s) 275, 702, 777, 815
MbiI CCGCTC 2 cut(s) 135, 260
MboI GATC 4 cut(s) 273, 700, 775, 813
MboII GAAGA 9 cut(s) 22, 67, 239, 373, 469, 599, 722, 795, 803
MflI RGATCY 2 cut(s) 700, 813
MhlI GDGCHC 2 cut(s) 174, 390
MluCI AATT 5 cut(s) 369, 408, 569, 623, 755
MlyI GAGTC 4 cut(s) 239, 287, 358, 393
Mph1103I ATGCAT 2 cut(s) 501, 712
MroI TCCGGA 1 cut(s) 233
MroNI GCCGGC 1 cut(s) 161
MroXI GAANNNNTTC 1 cut(s) 200
MseI TTAA 2 cut(s) 50, 642
MspA1I CMGCKG 1 cut(s) 656
MspI CCGG 4 cut(s) 162, 234, 303, 426
MspR9I CCNGG 2 cut(s) 426, 427
Mva1269I GAATGC 1 cut(s) 252
MvnI CGCG 4 cut(s) 179, 216, 246, 328
MwoI GCNNNNNNNGC 5 cut(s) 158, 178, 334, 385, 526
NaeI GCCGGC 1 cut(s) 163
NciI CCSGG 2 cut(s) 426, 427
NdeII GATC 4 cut(s) 273, 700, 775, 813
NgoMIV GCCGGC 1 cut(s) 161
NlaIII CATG 4 cut(s) 160, 449, 616, 710
NmuCI GTSAC 1 cut(s) 649
NruI TCGCGA 1 cut(s) 246
NsbI TGCGCA 1 cut(s) 749
NsiI ATGCAT 2 cut(s) 501, 712
NspV TTCGAA 2 cut(s) 16, 733
PciSI GCTCTTC 1 cut(s) 452
PctI GAATGC 1 cut(s) 252
PdiI GCCGGC 1 cut(s) 163
PdmI GAANNNNTTC 1 cut(s) 200
PfeI GAWTC 1 cut(s) 839
PkrI GCNGC 3 cut(s) 486, 829, 859
PleI GAGTC 4 cut(s) 238, 286, 358, 393
PpsI GAGTC 4 cut(s) 238, 286, 358, 393
Psp124BI GAGCTC 1 cut(s) 390
PspFI CCCAGC 1 cut(s) 656
PsuI RGATCY 2 cut(s) 700, 813
PvuII CAGCTG 1 cut(s) 656
RruI TCGCGA 1 cut(s) 246
SacI GAGCTC 1 cut(s) 390
SapI GCTCTTC 1 cut(s) 452
SaqAI TTAA 2 cut(s) 50, 642
SatI GCNGC 3 cut(s) 485, 828, 858
Sau3AI GATC 4 cut(s) 273, 700, 775, 813
SchI GAGTC 4 cut(s) 239, 287, 358, 393
ScrFI CCNGG 2 cut(s) 426, 427
SduI GDGCHC 2 cut(s) 174, 390
SetI ASST 9 cut(s) 109, 225, 348, 390, 541, 635, 658, 684, 798
SfaNI GCATC 1 cut(s) 719
SfuI TTCGAA 2 cut(s) 16, 733
SmaI CCCGGG 1 cut(s) 427
Sse9I AATT 5 cut(s) 369, 408, 569, 623, 755
SsiI CCGC 6 cut(s) 133, 165, 214, 250, 260, 339
SspMI CTAG 3 cut(s) 224, 288, 630
SstI GAGCTC 1 cut(s) 390
StyD4I CCNGG 2 cut(s) 424, 425
StyI CCWWGG 1 cut(s) 629
TaaI ACNGT 3 cut(s) 23, 129, 475
TaqI TCGA 7 cut(s) 16, 204, 256, 276, 397, 579, 733
TasI AATT 5 cut(s) 369, 408, 569, 623, 755
TfiI GAWTC 1 cut(s) 839
Tru1I TTAA 2 cut(s) 50, 642
Tru9I TTAA 2 cut(s) 50, 642
TscAI CASTG 2 cut(s) 195, 538
TseFI GTSAC 1 cut(s) 649
TseI GCWGC 3 cut(s) 484, 827, 857
Tsp45I GTSAC 1 cut(s) 649
TspDTI ATGAA 6 cut(s) 17, 145, 601, 636, 701, 782
TspGWI ACGGA 2 cut(s) 127, 707
TspMI CCCGGG 1 cut(s) 425
TspRI CASTG 2 cut(s) 195, 538
XapI RAATTY 3 cut(s) 369, 569, 755
XcmI CCANNNNNNNNNTGG 1 cut(s) 653
XmaI CCCGGG 1 cut(s) 425
XmaJI CCTAGG 1 cut(s) 629
XmnI GAANNNNTTC 1 cut(s) 200
XspI CTAG 3 cut(s) 224, 288, 630
Zsp2I ATGCAT 2 cut(s) 501, 712
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.