Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0005043

Physical Location & Seq

Genomic Coordinates Reverse (-)

50700096 .. 50702934

Gene Structure 2839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG386500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCGGGCGGTGAACCCCACGCGCTTCCACTTCTGGAGAAGCAGTTCGATGACTTCCGCTCTCAGCTTGAAGAGTCCGGAACACTGCGCGGCCTCATTCGAGCCGTGGTCATGGAGATCGAGTCCACCACTAGGTTTATTAACTCGAGCCTCTTGGTTCACCAGTCGAGTTCAACTCCCGAGGTTTTGGAGAAGCCAAAGGCTAAAATTATTGTGCTGAAGGAGCTCTACAATCAACTCGTTGAAATTGTGCGAATTGAGCTTTCGGGATCAGGGTCAACATATAGGATGAATCATCTCAACTCCTTCCACCATATTTACACTGCAACACTGCTAGCTTTGCTTGGCCATGCCATGTCAATTACTTGCAACAAAGGTTTTAGGAAGAAAACAAAAGGTCCTGGTATCCATTTTGACTATAGCCAACAAAAGATTGGTGGTAGTGGTTTCATGTATATAAGCTCTTCTCTTACCTGTCGTCATGCCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Translin

Protein Analysis

163

Amino Acids

18.12

Weight (kDa)

9.14

Isoelectric Point (pI)

47.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37020 AT2G37020 AT2G37020
fragaria_vesca	FvH4_6g16140 FvH4_6g16140 FvH4_6g16140 FvH4_6g16140
malus_domestica	MD12G1115500.v1.1
prunus_persica	Prupe.6G234600_v2.0.a1
pyrus_communis	pycom12g11490
rosa_chinensis	RchiOBHm_Chr1g0341651 RchiOBHm_Chr3g0469981 RchiOBHm_Chr4g0411411
rosa_laevigata	RLG00000024307
rosa_multiflora	Rmu_sc0004149.1_g000011 Rmu_sc0007963.1_g000002 Rmu_sc0020091.1_g000003 Rmu_ssc0000233.1_g000073
rosa_roxburghii	Rroxscaffold_1G00028150 Rroxscaffold_6G00411320
rosa_rugosa	Rorug03G0105900
rosa_samantha	Rh3AG154900 Rh3BG179000 Rh3CG169600 Rh3DG196200 Rh4AG014000 Rh4AG167700 Rh7AG386500 Rh7CG405800
rosa_wichuraiana	Rw3G014590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	60
AccII	CGCG	2 cut(s)	23, 90
AccIII	TCCGGA	1 cut(s)	77
AciI	CCGC	4 cut(s)	5, 9, 58, 90
AclWI	GGATC	1 cut(s)	277
AcoI	YGGCCR	1 cut(s)	346
AcuI	CTGAAG	1 cut(s)	239
AfiI	CCNNNNNNNGG	1 cut(s)	132
AgsI	TTSAA	3 cut(s)	71, 174, 245
AjnI	CCWGG	1 cut(s)	400
AloI	GAACNNNNNNTCC	2 cut(s)	29, 61
AluBI	AGCT	6 cut(s)	67, 226, 262, 338, 462, 489
AluI	AGCT	6 cut(s)	67, 226, 262, 338, 462, 489
Alw21I	GWGCWC	1 cut(s)	228
AlwI	GGATC	1 cut(s)	277
Ama87I	CYCGRG	2 cut(s)	145, 179
Aor13HI	TCCGGA	1 cut(s)	77
AoxI	GGCC	2 cut(s)	91, 346
Asp700I	GAANNNNTTC	1 cut(s)	44
AspLEI	GCGC	2 cut(s)	25, 90
AspS9I	GGNCC	1 cut(s)	398
AsuHPI	GGTGA	2 cut(s)	23, 152
AsuNHI	GCTAGC	1 cut(s)	334
AvaI	CYCGRG	2 cut(s)	145, 179
AvaII	GGWCC	1 cut(s)	398
BalI	TGGCCA	1 cut(s)	348
BanII	GRGCYC	1 cut(s)	228
BarI	GAAGNNNNNNTAC	2 cut(s)	212, 244
Bbv12I	GWGCWC	1 cut(s)	228
BceAI	ACGGC	1 cut(s)	89
BciT130I	CCWGG	1 cut(s)	402
BciVI	GTATCC	1 cut(s)	416
BfaI	CTAG	2 cut(s)	132, 335
BfmI	CTRYAG	1 cut(s)	418
BfuI	GTATCC	1 cut(s)	416
BisI	GCNGC	1 cut(s)	91
BlsI	GCNGC	1 cut(s)	92
Bme1390I	CCNGG	1 cut(s)	402
Bme18I	GGWCC	1 cut(s)	398
BmeT110I	CYCGRG	2 cut(s)	145, 179
BmgT120I	GGNCC	1 cut(s)	398
BmrFI	CCNGG	1 cut(s)	402
BmtI	GCTAGC	1 cut(s)	338
BplI	GAGNNNNNCTC	2 cut(s)	160, 192
BpmI	CTGGAG	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	105, 180
BsaWI	WCCGGW	1 cut(s)	77
BsaXI	ACNNNNNCTCC	4 cut(s)	29, 59, 107, 137
Bsc4I	CCNNNNNNNGG	1 cut(s)	132
Bse1I	ACTGG	1 cut(s)	163
BseAI	TCCGGA	1 cut(s)	77
BseBI	CCWGG	1 cut(s)	402
BseDI	CCNNGG	2 cut(s)	105, 180
BseGI	GGATG	1 cut(s)	294
BseLI	CCNNNNNNNGG	1 cut(s)	132
BseMII	CTCAG	1 cut(s)	77
BseNI	ACTGG	1 cut(s)	163
Bsh1236I	CGCG	2 cut(s)	23, 90
BshFI	GGCC	2 cut(s)	93, 348
BsiHKAI	GWGCWC	1 cut(s)	228
BsiHKCI	CYCGRG	2 cut(s)	145, 179
BsiSI	CCGG	1 cut(s)	78
BslI	CCNNNNNNNGG	1 cut(s)	132
BsnI	GGCC	2 cut(s)	93, 348
BsoBI	CYCGRG	2 cut(s)	145, 179
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp13I	TCCGGA	1 cut(s)	77
Bsp143I	GATC	2 cut(s)	117, 269
BspACI	CCGC	4 cut(s)	5, 9, 58, 90
BspANI	GGCC	2 cut(s)	93, 348
BspCNI	CTCAG	1 cut(s)	76
BspEI	TCCGGA	1 cut(s)	77
BspFNI	CGCG	2 cut(s)	23, 90
BspOI	GCTAGC	1 cut(s)	338
BspPI	GGATC	1 cut(s)	277
BspQI	GCTCTTC	1 cut(s)	469
BsrBI	CCGCTC	1 cut(s)	60
BsrI	ACTGG	1 cut(s)	163
BssECI	CCNNGG	2 cut(s)	105, 180
BssMI	GATC	2 cut(s)	117, 269
Bst2UI	CCWGG	1 cut(s)	402
Bst6I	CTCTTC	2 cut(s)	66, 469
BstC8I	GCNNGC	3 cut(s)	7, 336, 487
BstDEI	CTNAG	1 cut(s)	63
BstDSI	CCRYGG	1 cut(s)	105
BstF5I	GGATG	1 cut(s)	294
BstFNI	CGCG	2 cut(s)	23, 90
BstHHI	GCGC	2 cut(s)	25, 90
BstKTI	GATC	2 cut(s)	120, 272
BstMBI	GATC	2 cut(s)	117, 269
BstMWI	GCNNNNNNNGC	3 cut(s)	223, 259, 340
BstNI	CCWGG	1 cut(s)	402
BstSCI	CCNGG	1 cut(s)	400
BstSFI	CTRYAG	1 cut(s)	418
BstUI	CGCG	2 cut(s)	23, 90
BsuI	GTATCC	1 cut(s)	416
BsuRI	GGCC	2 cut(s)	93, 348
BtgI	CCRYGG	1 cut(s)	105
BtsCI	GGATG	1 cut(s)	294
BtsI	GCAGTG	3 cut(s)	83, 321, 329
BtsIMutI	CAGTG	3 cut(s)	83, 321, 329
Cac8I	GCNNGC	3 cut(s)	7, 336, 487
CfoI	GCGC	2 cut(s)	25, 90
Cfr13I	GGNCC	1 cut(s)	398
CviAII	CATG	5 cut(s)	112, 350, 355, 451, 482
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	2 cut(s)	119, 271
DpnII	GATC	2 cut(s)	117, 269
EaeI	YGGCCR	1 cut(s)	346
Eam1104I	CTCTTC	2 cut(s)	66, 469
EarI	CTCTTC	2 cut(s)	66, 469
Ecl136II	GAGCTC	1 cut(s)	226
Eco24I	GRGCYC	1 cut(s)	228
Eco47I	GGWCC	1 cut(s)	398
Eco53kI	GAGCTC	1 cut(s)	226
Eco57I	CTGAAG	1 cut(s)	239
Eco88I	CYCGRG	2 cut(s)	145, 179
EcoICRI	GAGCTC	1 cut(s)	226
EcoO109I	RGGNCCY	1 cut(s)	398
EcoRII	CCWGG	1 cut(s)	400
EcoT38I	GRGCYC	1 cut(s)	228
FaeI	CATG	5 cut(s)	115, 353, 358, 454, 485
FatI	CATG	5 cut(s)	111, 349, 354, 450, 481
Fnu4HI	GCNGC	1 cut(s)	91
FokI	GGATG	1 cut(s)	301
FriOI	GRGCYC	1 cut(s)	228
Fsp4HI	GCNGC	1 cut(s)	91
FspBI	CTAG	2 cut(s)	132, 335
GlaI	GCGC	2 cut(s)	24, 89
GluI	GCNGC	1 cut(s)	91
GsuI	CTGGAG	1 cut(s)	56
HaeIII	GGCC	2 cut(s)	93, 348
HapII	CCGG	1 cut(s)	78
HhaI	GCGC	2 cut(s)	25, 90
Hin1II	CATG	5 cut(s)	115, 353, 358, 454, 485
Hin6I	GCGC	2 cut(s)	23, 88
HinP1I	GCGC	2 cut(s)	23, 88
HincII	GTYRAC	1 cut(s)	279
HindII	GTYRAC	1 cut(s)	279
HinfI	GANTC	3 cut(s)	74, 122, 292
HpaII	CCGG	1 cut(s)	78
HphI	GGTGA	2 cut(s)	23, 152
Hpy166II	GTNNAC	4 cut(s)	14, 126, 160, 279
Hpy188III	TCNNGA	4 cut(s)	35, 78, 179, 267
Hpy8I	GTNNAC	4 cut(s)	14, 126, 160, 279
HpyAV	CCTTC	2 cut(s)	214, 316
HpyCH4V	TGCA	2 cut(s)	326, 369
HpyF10VI	GCNNNNNNNGC	3 cut(s)	223, 259, 340
HpyF3I	CTNAG	1 cut(s)	63
Hsp92II	CATG	5 cut(s)	115, 353, 358, 454, 485
HspAI	GCGC	2 cut(s)	23, 88
Kpn2I	TCCGGA	1 cut(s)	77
Kzo9I	GATC	2 cut(s)	117, 269
LguI	GCTCTTC	1 cut(s)	469
LmnI	GCTCC	1 cut(s)	223
LpnPI	CCDG	7 cut(s)	20, 91, 176, 258, 387, 414, 487
MaeI	CTAG	2 cut(s)	132, 335
MalI	GATC	2 cut(s)	119, 271
MbiI	CCGCTC	1 cut(s)	60
MboI	GATC	2 cut(s)	117, 269
MboII	GAAGA	3 cut(s)	83, 397, 456
MhlI	GDGCHC	1 cut(s)	228
MlsI	TGGCCA	1 cut(s)	348
MluCI	AATT	4 cut(s)	207, 246, 255, 360
MluNI	TGGCCA	1 cut(s)	348
MlyI	GAGTC	2 cut(s)	83, 131
MnlI	CCTC	3 cut(s)	104, 161, 175
Mox20I	TGGCCA	1 cut(s)	348
MroI	TCCGGA	1 cut(s)	77
MroXI	GAANNNNTTC	1 cut(s)	44
MscI	TGGCCA	1 cut(s)	348
MseI	TTAA	1 cut(s)	141
Msp20I	TGGCCA	1 cut(s)	348
MspA1I	CMGCKG	1 cut(s)	489
MspI	CCGG	1 cut(s)	78
MspR9I	CCNGG	1 cut(s)	402
MvaI	CCWGG	1 cut(s)	402
MvnI	CGCG	2 cut(s)	23, 90
MwoI	GCNNNNNNNGC	3 cut(s)	223, 259, 340
NdeII	GATC	2 cut(s)	117, 269
NheI	GCTAGC	1 cut(s)	334
NlaIII	CATG	5 cut(s)	115, 353, 358, 454, 485
PaeR7I	CTCGAG	1 cut(s)	145
PciSI	GCTCTTC	1 cut(s)	469
PdmI	GAANNNNTTC	1 cut(s)	44
PfeI	GAWTC	1 cut(s)	292
PkrI	GCNGC	1 cut(s)	92
PleI	GAGTC	2 cut(s)	82, 130
PpsI	GAGTC	2 cut(s)	82, 130
PpuMI	RGGWCCY	1 cut(s)	398
Psp124BI	GAGCTC	1 cut(s)	228
Psp5II	RGGWCCY	1 cut(s)	398
Psp6I	CCWGG	1 cut(s)	400
PspGI	CCWGG	1 cut(s)	400
PspPI	GGNCC	1 cut(s)	398
PspPPI	RGGWCCY	1 cut(s)	398
PspXI	VCTCGAGB	1 cut(s)	145
PvuII	CAGCTG	1 cut(s)	489
SacI	GAGCTC	1 cut(s)	228
SapI	GCTCTTC	1 cut(s)	469
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	1 cut(s)	91
Sau3AI	GATC	2 cut(s)	117, 269
Sau96I	GGNCC	1 cut(s)	398
SchI	GAGTC	2 cut(s)	83, 131
ScrFI	CCNGG	1 cut(s)	402
SduI	GDGCHC	1 cut(s)	228
SfcI	CTRYAG	1 cut(s)	418
Sfr274I	CTCGAG	1 cut(s)	145
SinI	GGWCC	1 cut(s)	398
SlaI	CTCGAG	1 cut(s)	145
SmlI	CTYRAG	1 cut(s)	145
SmoI	CTYRAG	1 cut(s)	145
Sse9I	AATT	4 cut(s)	207, 246, 255, 360
SsiI	CCGC	4 cut(s)	5, 9, 58, 90
SspMI	CTAG	2 cut(s)	132, 335
SstI	GAGCTC	1 cut(s)	228
StyD4I	CCNGG	1 cut(s)	400
TaqI	TCGA	5 cut(s)	48, 100, 120, 146, 167
TasI	AATT	4 cut(s)	207, 246, 255, 360
TauI	GCSGC	1 cut(s)	93
TfiI	GAWTC	1 cut(s)	292
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TscAI	CASTG	3 cut(s)	90, 328, 336
TspDTI	ATGAA	2 cut(s)	305, 439
TspRI	CASTG	3 cut(s)	90, 328, 336
VpaK11BI	GGWCC	1 cut(s)	398
XcmI	CCANNNNNNNNNTGG	1 cut(s)	431
XhoI	CTCGAG	1 cut(s)	145
XmnI	GAANNNNTTC	1 cut(s)	44
XspI	CTAG	2 cut(s)	132, 335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.