Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020091.1

Orthogroup ID

OG0005043

Physical Location & Seq

Genomic Coordinates Forward (+)

15489 .. 16128

Gene Structure 640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020091.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atgaaatcagcgtttcgaaacggttacttcttcacactctctcgctccttaaaccctaaccctaaccctaaccttccctctactctcttctctctccatctcatccctcctcactcatctccgtccatctcaccgcccccattccgctccgtctctccgatcgccagaatttccggcctctccttcacctccatggcgggcggtgaaccccacgcgcttccacttctggagaagcagttcgatgacttccgctctcagctcgaagagtcgggaacactgcgcgaccgcattcgagccgtggtggcggagatcgagtccacctctaggtttattcactcgagcctcctcttggttcaccagtcgcgttctacacccgaggttttggagaagccaaaggctcaaattgttgtgctgaaggagctctacaatcggctcgctgaaattgtgcgtgaaagccctgggggatattacaggttagtggaattgagctttcggattttcgtggaaattgaagtgcgtttgttatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Translin

Protein Analysis

175

Amino Acids

19.73

Weight (kDa)

9.45

Isoelectric Point (pI)

63.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37020 AT2G37020 AT2G37020
fragaria_vesca	FvH4_6g16140 FvH4_6g16140 FvH4_6g16140 FvH4_6g16140
malus_domestica	MD12G1115500.v1.1
prunus_persica	Prupe.6G234600_v2.0.a1
pyrus_communis	pycom12g11490
rosa_chinensis	RchiOBHm_Chr1g0341651 RchiOBHm_Chr3g0469981 RchiOBHm_Chr4g0411411
rosa_laevigata	RLG00000024307
rosa_multiflora	Rmu_sc0004149.1_g000011 Rmu_sc0007963.1_g000002 Rmu_sc0020091.1_g000003 Rmu_ssc0000233.1_g000073
rosa_roxburghii	Rroxscaffold_1G00028150 Rroxscaffold_6G00411320
rosa_rugosa	Rorug03G0105900
rosa_samantha	Rh3AG154900 Rh3BG179000 Rh3CG169600 Rh3DG196200 Rh4AG014000 Rh4AG167700 Rh7AG386500 Rh7CG405800
rosa_wichuraiana	Rw3G014590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	147, 252
AccII	CGCG	3 cut(s)	215, 282, 364
AciI	CCGC	7 cut(s)	134, 145, 197, 201, 250, 286, 305
AcsI	RAATTY	1 cut(s)	168
AcuI	CTGAAG	1 cut(s)	434
AfiI	CCNNNNNNNGG	2 cut(s)	324, 349
AgsI	TTSAA	1 cut(s)	512
AjnI	CCWGG	1 cut(s)	457
AloI	GAACNNNNNNTCC	2 cut(s)	221, 253
AluBI	AGCT	3 cut(s)	259, 421, 489
AluI	AGCT	3 cut(s)	259, 421, 489
Alw21I	GWGCWC	1 cut(s)	423
Alw26I	GTCTC	1 cut(s)	157
Ama87I	CYCGRG	2 cut(s)	337, 374
AoxI	GGCC	1 cut(s)	175
ApoI	RAATTY	1 cut(s)	168
Asp700I	GAANNNNTTC	1 cut(s)	236
AspLEI	GCGC	2 cut(s)	217, 282
AsuHPI	GGTGA	4 cut(s)	123, 178, 215, 347
AsuII	TTCGAA	1 cut(s)	16
AvaI	CYCGRG	2 cut(s)	337, 374
BanII	GRGCYC	1 cut(s)	423
BarI	GAAGNNNNNNTAC	2 cut(s)	407, 439
Bbv12I	GWGCWC	1 cut(s)	423
BccI	CCATC	2 cut(s)	105, 134
BceAI	ACGGC	1 cut(s)	281
BciT130I	CCWGG	1 cut(s)	459
BcoDI	GTCTC	1 cut(s)	157
BfaI	CTAG	1 cut(s)	324
BglI	GCCNNNNNGGC	1 cut(s)	302
Bme1390I	CCNGG	1 cut(s)	459
BmeT110I	CYCGRG	2 cut(s)	337, 374
BmrFI	CCNGG	1 cut(s)	459
BplI	GAGNNNNNCTC	2 cut(s)	305, 337
BpmI	CTGGAG	1 cut(s)	248
Bpu14I	TTCGAA	1 cut(s)	16
BsaJI	CCNNGG	5 cut(s)	192, 297, 375, 457, 458
BsaXI	ACNNNNNCTCC	4 cut(s)	221, 251, 299, 329
Bsc4I	CCNNNNNNNGG	2 cut(s)	324, 349
Bse1I	ACTGG	1 cut(s)	358
BseBI	CCWGG	1 cut(s)	459
BseDI	CCNNGG	5 cut(s)	192, 297, 375, 457, 458
BseGI	GGATG	1 cut(s)	102
BseLI	CCNNNNNNNGG	2 cut(s)	324, 349
BseMII	CTCAG	1 cut(s)	269
BseNI	ACTGG	1 cut(s)	358
BseRI	GAGGAG	2 cut(s)	99, 335
Bsh1236I	CGCG	3 cut(s)	215, 282, 364
Bsh1285I	CGRYCG	2 cut(s)	162, 286
BshFI	GGCC	1 cut(s)	177
BsiEI	CGRYCG	2 cut(s)	162, 286
BsiHKAI	GWGCWC	1 cut(s)	423
BsiHKCI	CYCGRG	2 cut(s)	337, 374
BsiSI	CCGG	1 cut(s)	174
BslI	CCNNNNNNNGG	2 cut(s)	324, 349
BsmAI	GTCTC	1 cut(s)	157
BsmBI	CGTCTC	1 cut(s)	157
BsmI	GAATGC	1 cut(s)	288
BsnI	GGCC	1 cut(s)	177
BsoBI	CYCGRG	2 cut(s)	337, 374
Bsp119I	TTCGAA	1 cut(s)	16
Bsp1286I	GDGCHC	1 cut(s)	423
Bsp143I	GATC	2 cut(s)	159, 309
Bsp19I	CCATGG	1 cut(s)	192
BspACI	CCGC	7 cut(s)	134, 145, 197, 201, 250, 286, 305
BspANI	GGCC	1 cut(s)	177
BspCNI	CTCAG	1 cut(s)	268
BspFNI	CGCG	3 cut(s)	215, 282, 364
BspT104I	TTCGAA	1 cut(s)	16
BsrBI	CCGCTC	2 cut(s)	147, 252
BsrI	ACTGG	1 cut(s)	358
BssECI	CCNNGG	5 cut(s)	192, 297, 375, 457, 458
BssMI	GATC	2 cut(s)	159, 309
BssT1I	CCWWGG	1 cut(s)	192
Bst2UI	CCWGG	1 cut(s)	459
Bst4CI	ACNGT	1 cut(s)	23
Bst6I	CTCTTC	2 cut(s)	92, 258
BstBI	TTCGAA	1 cut(s)	16
BstC8I	GCNNGC	2 cut(s)	199, 435
BstDEI	CTNAG	1 cut(s)	255
BstDSI	CCRYGG	2 cut(s)	192, 297
BstF5I	GGATG	1 cut(s)	102
BstFNI	CGCG	3 cut(s)	215, 282, 364
BstHHI	GCGC	2 cut(s)	217, 282
BstKTI	GATC	2 cut(s)	162, 312
BstMAI	GTCTC	1 cut(s)	157
BstMBI	GATC	2 cut(s)	159, 309
BstMCI	CGRYCG	2 cut(s)	162, 286
BstMWI	GCNNNNNNNGC	2 cut(s)	302, 418
BstNI	CCWGG	1 cut(s)	459
BstSCI	CCNGG	1 cut(s)	457
BstUI	CGCG	3 cut(s)	215, 282, 364
BsuRI	GGCC	1 cut(s)	177
BtgI	CCRYGG	2 cut(s)	192, 297
BtsCI	GGATG	1 cut(s)	102
BtsI	GCAGTG	1 cut(s)	275
BtsIMutI	CAGTG	1 cut(s)	275
Cac8I	GCNNGC	2 cut(s)	199, 435
CfoI	GCGC	2 cut(s)	217, 282
CviAII	CATG	1 cut(s)	193
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	2 cut(s)	161, 311
DpnII	GATC	2 cut(s)	159, 309
Eam1104I	CTCTTC	2 cut(s)	92, 258
EarI	CTCTTC	2 cut(s)	92, 258
EciI	GGCGGA	1 cut(s)	320
Ecl136II	GAGCTC	1 cut(s)	421
Eco130I	CCWWGG	1 cut(s)	192
Eco24I	GRGCYC	1 cut(s)	423
Eco53kI	GAGCTC	1 cut(s)	421
Eco57I	CTGAAG	1 cut(s)	434
Eco88I	CYCGRG	2 cut(s)	337, 374
EcoICRI	GAGCTC	1 cut(s)	421
EcoRII	CCWGG	1 cut(s)	457
EcoT14I	CCWWGG	1 cut(s)	192
EcoT38I	GRGCYC	1 cut(s)	423
ErhI	CCWWGG	1 cut(s)	192
Esp3I	CGTCTC	1 cut(s)	157
FaeI	CATG	1 cut(s)	196
FaiI	YATR	2 cut(s)	194, 526
FatI	CATG	1 cut(s)	192
FauI	CCCGC	1 cut(s)	190
FokI	GGATG	1 cut(s)	89
FriOI	GRGCYC	1 cut(s)	423
FspBI	CTAG	1 cut(s)	324
GlaI	GCGC	2 cut(s)	216, 281
GsuI	CTGGAG	1 cut(s)	248
HaeIII	GGCC	1 cut(s)	177
HapII	CCGG	1 cut(s)	174
HhaI	GCGC	2 cut(s)	217, 282
Hin1II	CATG	1 cut(s)	196
Hin6I	GCGC	2 cut(s)	215, 280
HinP1I	GCGC	2 cut(s)	215, 280
HinfI	GANTC	2 cut(s)	266, 314
HpaII	CCGG	1 cut(s)	174
HphI	GGTGA	4 cut(s)	123, 178, 215, 347
Hpy166II	GTNNAC	3 cut(s)	206, 318, 355
Hpy188I	TCNGA	2 cut(s)	159, 495
Hpy188III	TCNNGA	2 cut(s)	227, 270
Hpy8I	GTNNAC	3 cut(s)	206, 318, 355
HpyAV	CCTTC	3 cut(s)	83, 193, 409
HpyCH4III	ACNGT	1 cut(s)	23
HpyF10VI	GCNNNNNNNGC	2 cut(s)	302, 418
HpyF3I	CTNAG	1 cut(s)	255
Hsp92II	CATG	1 cut(s)	196
HspAI	GCGC	2 cut(s)	215, 280
Kzo9I	GATC	2 cut(s)	159, 309
LmnI	GCTCC	3 cut(s)	50, 152, 418
LpnPI	CCDG	7 cut(s)	178, 187, 212, 371, 444, 457, 471
MaeI	CTAG	1 cut(s)	324
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	2 cut(s)	161, 311
MbiI	CCGCTC	2 cut(s)	147, 252
MboI	GATC	2 cut(s)	159, 309
MboII	GAAGA	3 cut(s)	22, 79, 275
MhlI	GDGCHC	1 cut(s)	423
MluCI	AATT	5 cut(s)	168, 402, 441, 482, 507
MlyI	GAGTC	2 cut(s)	275, 323
MnlI	CCTC	9 cut(s)	88, 117, 120, 188, 199, 331, 353, 356, 370
MroXI	GAANNNNTTC	1 cut(s)	236
MseI	TTAA	1 cut(s)	50
MslI	CAYNNNNRTG	1 cut(s)	191
MspI	CCGG	1 cut(s)	174
MspR9I	CCNGG	1 cut(s)	459
Mva1269I	GAATGC	1 cut(s)	288
MvaI	CCWGG	1 cut(s)	459
MvnI	CGCG	3 cut(s)	215, 282, 364
MwoI	GCNNNNNNNGC	2 cut(s)	302, 418
NcoI	CCATGG	1 cut(s)	192
NdeII	GATC	2 cut(s)	159, 309
NlaIII	CATG	1 cut(s)	196
NspV	TTCGAA	1 cut(s)	16
PaeR7I	CTCGAG	1 cut(s)	337
PasI	CCCWGGG	1 cut(s)	458
PctI	GAATGC	1 cut(s)	288
PdmI	GAANNNNTTC	1 cut(s)	236
Ple19I	CGATCG	1 cut(s)	162
PleI	GAGTC	2 cut(s)	274, 322
PpsI	GAGTC	2 cut(s)	274, 322
Psp124BI	GAGCTC	1 cut(s)	423
Psp6I	CCWGG	1 cut(s)	457
PspGI	CCWGG	1 cut(s)	457
PspXI	VCTCGAGB	1 cut(s)	337
PvuI	CGATCG	1 cut(s)	162
RseI	CAYNNNNRTG	1 cut(s)	191
SacI	GAGCTC	1 cut(s)	423
SaqAI	TTAA	1 cut(s)	50
Sau3AI	GATC	2 cut(s)	159, 309
SchI	GAGTC	2 cut(s)	275, 323
ScrFI	CCNGG	1 cut(s)	459
SduI	GDGCHC	1 cut(s)	423
SetI	ASST	9 cut(s)	75, 191, 261, 323, 329, 381, 423, 476, 491
Sfr274I	CTCGAG	1 cut(s)	337
SfuI	TTCGAA	1 cut(s)	16
SlaI	CTCGAG	1 cut(s)	337
SmiMI	CAYNNNNRTG	1 cut(s)	191
SmlI	CTYRAG	1 cut(s)	337
SmoI	CTYRAG	1 cut(s)	337
Sse9I	AATT	5 cut(s)	168, 402, 441, 482, 507
SsiI	CCGC	7 cut(s)	134, 145, 197, 201, 250, 286, 305
SspMI	CTAG	1 cut(s)	324
SstI	GAGCTC	1 cut(s)	423
StyD4I	CCNGG	1 cut(s)	457
StyI	CCWWGG	1 cut(s)	192
TaaI	ACNGT	1 cut(s)	23
TaqI	TCGA	6 cut(s)	16, 240, 261, 292, 312, 338
TasI	AATT	5 cut(s)	168, 402, 441, 482, 507
Tru1I	TTAA	1 cut(s)	50
Tru9I	TTAA	1 cut(s)	50
TscAI	CASTG	1 cut(s)	282
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	111, 139
TspRI	CASTG	1 cut(s)	282
XapI	RAATTY	1 cut(s)	168
XhoI	CTCGAG	1 cut(s)	337
XmnI	GAANNNNTTC	1 cut(s)	236
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.