Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0005043

Physical Location & Seq

Genomic Coordinates Reverse (-)

42296887 .. 42297313

Gene Structure 427 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG167700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGCGGGCGGTGAACCCCACGCGCTTCCACTTCTGGAGAAGCAATTCGATGACTTCCGCTCTCAGCTCGAAGAGTCCGGAACACTGTGCAGCCGCATTCGAGCGGTGGTCATGGAGATCGAGCCCACCACTAGGTTTATTCACTCGAGCCTCCTCTTGGTTCACCAGTCGAGTTCAACTCCCGAGGTTTTGGAGAAGCCAAAGGCTAAAATTATTGTGCTGAAGGAGCTCTACAATCAACTCGCTGAAATTGTGCGAATTGAGCTTTCGGGTTTTCGTGGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Translin

Protein Analysis

95

Amino Acids

10.69

Weight (kDa)

5.89

Isoelectric Point (pI)

53.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37020 AT2G37020 AT2G37020
fragaria_vesca	FvH4_6g16140 FvH4_6g16140 FvH4_6g16140 FvH4_6g16140
malus_domestica	MD12G1115500.v1.1
prunus_persica	Prupe.6G234600_v2.0.a1
pyrus_communis	pycom12g11490
rosa_chinensis	RchiOBHm_Chr1g0341651 RchiOBHm_Chr3g0469981 RchiOBHm_Chr4g0411411
rosa_laevigata	RLG00000024307
rosa_multiflora	Rmu_sc0004149.1_g000011 Rmu_sc0007963.1_g000002 Rmu_sc0020091.1_g000003 Rmu_ssc0000233.1_g000073
rosa_roxburghii	Rroxscaffold_1G00028150 Rroxscaffold_6G00411320
rosa_rugosa	Rorug03G0105900
rosa_samantha	Rh3AG154900 Rh3BG179000 Rh3CG169600 Rh3DG196200 Rh4AG014000 Rh4AG167700 Rh7AG386500 Rh7CG405800
rosa_wichuraiana	Rw3G014590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	60, 104
AccII	CGCG	1 cut(s)	23
AccIII	TCCGGA	1 cut(s)	77
AciI	CCGC	5 cut(s)	5, 9, 58, 94, 104
AcuI	CTGAAG	1 cut(s)	242
AfiI	CCNNNNNNNGG	2 cut(s)	132, 157
AgsI	TTSAA	1 cut(s)	177
AluBI	AGCT	3 cut(s)	67, 229, 265
AluI	AGCT	3 cut(s)	67, 229, 265
Alw21I	GWGCWC	1 cut(s)	231
Ama87I	CYCGRG	2 cut(s)	145, 182
Aor13HI	TCCGGA	1 cut(s)	77
ApeKI	GCWGC	1 cut(s)	90
Asp700I	GAANNNNTTC	1 cut(s)	44
AspLEI	GCGC	1 cut(s)	25
AsuHPI	GGTGA	2 cut(s)	23, 155
AvaI	CYCGRG	2 cut(s)	145, 182
BanII	GRGCYC	2 cut(s)	126, 231
BarI	GAAGNNNNNNTAC	2 cut(s)	215, 247
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	102
BfaI	CTAG	1 cut(s)	132
BisI	GCNGC	2 cut(s)	91, 94
BlsI	GCNGC	2 cut(s)	92, 95
BmeT110I	CYCGRG	2 cut(s)	145, 182
BplI	GAGNNNNNCTC	2 cut(s)	163, 195
BpmI	CTGGAG	1 cut(s)	56
BsaJI	CCNNGG	1 cut(s)	183
BsaWI	WCCGGW	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	2 cut(s)	132, 157
Bse1I	ACTGG	1 cut(s)	166
BseAI	TCCGGA	1 cut(s)	77
BseDI	CCNNGG	1 cut(s)	183
BseLI	CCNNNNNNNGG	2 cut(s)	132, 157
BseMII	CTCAG	1 cut(s)	77
BseNI	ACTGG	1 cut(s)	166
BseRI	GAGGAG	1 cut(s)	143
BseXI	GCAGC	1 cut(s)	102
BsgI	GTGCAG	1 cut(s)	109
Bsh1236I	CGCG	1 cut(s)	23
BsiHKAI	GWGCWC	1 cut(s)	231
BsiHKCI	CYCGRG	2 cut(s)	145, 182
BsiSI	CCGG	1 cut(s)	78
BslI	CCNNNNNNNGG	2 cut(s)	132, 157
BsmI	GAATGC	1 cut(s)	96
BsoBI	CYCGRG	2 cut(s)	145, 182
Bsp1286I	GDGCHC	2 cut(s)	126, 231
Bsp13I	TCCGGA	1 cut(s)	77
Bsp143I	GATC	1 cut(s)	117
BspACI	CCGC	5 cut(s)	5, 9, 58, 94, 104
BspCNI	CTCAG	1 cut(s)	76
BspEI	TCCGGA	1 cut(s)	77
BspFNI	CGCG	1 cut(s)	23
BsrBI	CCGCTC	2 cut(s)	60, 104
BsrI	ACTGG	1 cut(s)	166
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	1 cut(s)	117
Bst4CI	ACNGT	1 cut(s)	87
Bst6I	CTCTTC	1 cut(s)	66
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	1 cut(s)	63
BstFNI	CGCG	1 cut(s)	23
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	1 cut(s)	120
BstMBI	GATC	1 cut(s)	117
BstMWI	GCNNNNNNNGC	2 cut(s)	226, 262
BstUI	CGCG	1 cut(s)	23
BstV1I	GCAGC	1 cut(s)	102
BtsIMutI	CAGTG	1 cut(s)	83
Cac8I	GCNNGC	1 cut(s)	7
CfoI	GCGC	1 cut(s)	25
CviAII	CATG	1 cut(s)	112
CviJI	RGCY	8 cut(s)	67, 93, 124, 150, 199, 206, 229, 265
CviKI_1	RGCY	8 cut(s)	67, 93, 124, 150, 199, 206, 229, 265
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	1 cut(s)	119
DpnII	GATC	1 cut(s)	117
Eam1104I	CTCTTC	1 cut(s)	66
EarI	CTCTTC	1 cut(s)	66
Ecl136II	GAGCTC	1 cut(s)	229
Eco24I	GRGCYC	2 cut(s)	126, 231
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	242
Eco88I	CYCGRG	2 cut(s)	145, 182
EcoICRI	GAGCTC	1 cut(s)	229
EcoT38I	GRGCYC	2 cut(s)	126, 231
FaeI	CATG	1 cut(s)	115
FaiI	YATR	1 cut(s)	113
FatI	CATG	1 cut(s)	111
Fnu4HI	GCNGC	2 cut(s)	91, 94
FriOI	GRGCYC	2 cut(s)	126, 231
Fsp4HI	GCNGC	2 cut(s)	91, 94
FspBI	CTAG	1 cut(s)	132
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	2 cut(s)	91, 94
GsuI	CTGGAG	1 cut(s)	56
HapII	CCGG	1 cut(s)	78
HhaI	GCGC	1 cut(s)	25
Hin1II	CATG	1 cut(s)	115
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HinfI	GANTC	1 cut(s)	74
HpaII	CCGG	1 cut(s)	78
HphI	GGTGA	2 cut(s)	23, 155
Hpy166II	GTNNAC	2 cut(s)	14, 163
Hpy188III	TCNNGA	3 cut(s)	35, 78, 182
Hpy8I	GTNNAC	2 cut(s)	14, 163
HpyAV	CCTTC	1 cut(s)	217
HpyCH4III	ACNGT	1 cut(s)	87
HpyCH4V	TGCA	1 cut(s)	90
HpyF10VI	GCNNNNNNNGC	2 cut(s)	226, 262
HpyF3I	CTNAG	1 cut(s)	63
Hsp92II	CATG	1 cut(s)	115
HspAI	GCGC	1 cut(s)	23
Kpn2I	TCCGGA	1 cut(s)	77
Kzo9I	GATC	1 cut(s)	117
LmnI	GCTCC	1 cut(s)	226
LpnPI	CCDG	3 cut(s)	20, 91, 179
Lsp1109I	GCAGC	1 cut(s)	102
MaeI	CTAG	1 cut(s)	132
MalI	GATC	1 cut(s)	119
MbiI	CCGCTC	2 cut(s)	60, 104
MboI	GATC	1 cut(s)	117
MboII	GAAGA	1 cut(s)	83
MhlI	GDGCHC	2 cut(s)	126, 231
MluCI	AATT	5 cut(s)	44, 210, 249, 258, 283
MlyI	GAGTC	1 cut(s)	83
MnlI	CCTC	3 cut(s)	161, 164, 178
MroI	TCCGGA	1 cut(s)	77
MroXI	GAANNNNTTC	1 cut(s)	44
MspI	CCGG	1 cut(s)	78
Mva1269I	GAATGC	1 cut(s)	96
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	2 cut(s)	226, 262
NdeII	GATC	1 cut(s)	117
NlaIII	CATG	1 cut(s)	115
PaeR7I	CTCGAG	1 cut(s)	145
PctI	GAATGC	1 cut(s)	96
PdmI	GAANNNNTTC	1 cut(s)	44
PkrI	GCNGC	2 cut(s)	92, 95
PleI	GAGTC	1 cut(s)	82
PpsI	GAGTC	1 cut(s)	82
Psp124BI	GAGCTC	1 cut(s)	231
PspXI	VCTCGAGB	1 cut(s)	145
SacI	GAGCTC	1 cut(s)	231
SatI	GCNGC	2 cut(s)	91, 94
Sau3AI	GATC	1 cut(s)	117
SchI	GAGTC	1 cut(s)	83
SduI	GDGCHC	2 cut(s)	126, 231
SetI	ASST	5 cut(s)	69, 137, 189, 231, 267
Sfr274I	CTCGAG	1 cut(s)	145
SlaI	CTCGAG	1 cut(s)	145
SmlI	CTYRAG	1 cut(s)	145
SmoI	CTYRAG	1 cut(s)	145
Sse9I	AATT	5 cut(s)	44, 210, 249, 258, 283
SsiI	CCGC	5 cut(s)	5, 9, 58, 94, 104
SspMI	CTAG	1 cut(s)	132
SstI	GAGCTC	1 cut(s)	231
TaaI	ACNGT	1 cut(s)	87
TaqI	TCGA	6 cut(s)	48, 69, 100, 120, 146, 170
TasI	AATT	5 cut(s)	44, 210, 249, 258, 283
TauI	GCSGC	1 cut(s)	96
TscAI	CASTG	1 cut(s)	90
TseI	GCWGC	1 cut(s)	90
TspRI	CASTG	1 cut(s)	90
XhoI	CTCGAG	1 cut(s)	145
XmnI	GAANNNNTTC	1 cut(s)	44
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.