Rw3G014590

Translin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0005043
Physical Location & Seq
Reverse (-)
14826659 .. 14829624
2966 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G014590.1

Sequence Viewer

Length: 891 bp
ATGAAATCAGCGTTTCGAAACGGTTACTTCTTCACACTCTCTCGCTCCTTACACCCTAACCCTAACCTTCCCTCTACTCTCTTCTCTCTCCATCTCATCCCTCCTCACTCATCTCCGTCCATCTCACCGCCCCCATTCCGCTCCGTCTCTCCGATCGCCAGAAGTTCCGGCCTCTCCTTCACCTCCATGGCGGGCAGTGAAGCCCACGCGCTTCCACTTCTGGAGAAGCAGTTCGATGACTTCCGCTCTCAGCTCGAAGAGTCGGGAACACTGCGCGACCGCATTCGAGCCGTGGTGGCGGAGATCGAGTCCACCTCTAGGTTTATTCACTCGAGCCTCCTCTTGGTTCACCAGTCGCGTTCTACACCCGAGGTTTTGGAGAAGCCAAAGGCTCAAATTGTTGTGCTGAAGGAGCTCTACAATCGGCTCGCTGAAATTGTGCGTGAAAGCCCTGGGGGGTATTACAGATATCATGGTGATTGGAAGTCTGAGACGCAGACTGTGGTTTCGCTGCTTGCTTTTATGCATTGGTTAGAGACAGGGACGCTTTTGTTGCACACTGAAGCTGAGGAAAAACTTGGGTTGAGCGGCTCAGAATTTGGTCTGGATGTTGAAGACTATCTTGTTGGTATTTGCTTCATGTCTAATGAACTGCCTAGGTATGTGGTTAACCAAGTGACAGCTGGGGCTTATGATTGCCCAAGAAAGGTGATGAAGTTTTTGACAGACCTCCATGCAGCCTTCCGACTGCTCAATCTTCGAAATGACTTTTTGCGCAAGAAATTTGATGGTATGAAATATGACCTAAGAAGAGTTGAAGAGGTTTACTATGATGTAAAGATCCGAGGCTTGGCAGCCAATGTGGATTCTGTGGAAAAGGCAGCAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Translin

Protein Analysis

296

Amino Acids

33.47

Weight (kDa)

7.17

Isoelectric Point (pI)

53.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Translin PF01997 91 - 283 1.3e-56 Translin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 776
AccBSI CCGCTC 3 cut(s) 141, 246, 588
AccII CGCG 3 cut(s) 209, 276, 358
AciI CCGC 7 cut(s) 128, 139, 191, 244, 280, 299, 588
AclWI GGATC 1 cut(s) 835
AcsI RAATTY 2 cut(s) 596, 782
AcuI CTGAAG 2 cut(s) 428, 582
AfiI CCNNNNNNNGG 4 cut(s) 318, 343, 706, 850
AgsI TTSAA 2 cut(s) 614, 818
AjnI CCWGG 1 cut(s) 451
AloI GAACNNNNNNTCC 2 cut(s) 215, 247
AluBI AGCT 4 cut(s) 253, 415, 566, 683
AluI AGCT 4 cut(s) 253, 415, 566, 683
Alw21I GWGCWC 1 cut(s) 417
Alw26I GTCTC 3 cut(s) 151, 485, 530
AlwI GGATC 1 cut(s) 835
Ama87I CYCGRG 2 cut(s) 331, 368
AoxI GGCC 1 cut(s) 169
ApeKI GCWGC 5 cut(s) 511, 737, 854, 881, 884
ApoI RAATTY 2 cut(s) 596, 782
ArsI GACNNNNNNTTYG 2 cut(s) 490, 522
Asp700I GAANNNNTTC 1 cut(s) 230
AspA2I CCTAGG 1 cut(s) 656
AspLEI GCGC 3 cut(s) 211, 276, 777
AsuHPI GGTGA 5 cut(s) 117, 172, 341, 488, 721
AsuII TTCGAA 2 cut(s) 16, 760
AvaI CYCGRG 2 cut(s) 331, 368
AvrII CCTAGG 1 cut(s) 656
BanII GRGCYC 1 cut(s) 417
BarI GAAGNNNNNNTAC 2 cut(s) 401, 433
BbsI GAAGAC 1 cut(s) 621
Bbv12I GWGCWC 1 cut(s) 417
BbvCI CCTCAGC 1 cut(s) 567
BbvI GCAGC 3 cut(s) 498, 749, 866
BccI CCATC 3 cut(s) 99, 128, 782
BceAI ACGGC 1 cut(s) 275
BciT130I CCWGG 1 cut(s) 453
BcoDI GTCTC 3 cut(s) 151, 485, 530
BfaI CTAG 2 cut(s) 318, 657
BglI GCCNNNNNGGC 1 cut(s) 296
BisI GCNGC 6 cut(s) 512, 589, 738, 855, 882, 885
BlnI CCTAGG 1 cut(s) 656
BlsI GCNGC 6 cut(s) 513, 590, 739, 856, 883, 886
Bme1390I CCNGG 1 cut(s) 453
BmeT110I CYCGRG 2 cut(s) 331, 368
BmrFI CCNGG 1 cut(s) 453
BpiI GAAGAC 1 cut(s) 621
BplI GAGNNNNNCTC 2 cut(s) 299, 331
BpmI CTGGAG 1 cut(s) 242
Bpu10I CCTNAGC 1 cut(s) 567
Bpu14I TTCGAA 2 cut(s) 16, 760
BsaJI CCNNGG 7 cut(s) 186, 291, 369, 451, 452, 656, 844
BsaXI ACNNNNNCTCC 4 cut(s) 215, 245, 293, 323
Bsc4I CCNNNNNNNGG 4 cut(s) 318, 343, 706, 850
Bse1I ACTGG 1 cut(s) 352
BseBI CCWGG 1 cut(s) 453
BseDI CCNNGG 7 cut(s) 186, 291, 369, 451, 452, 656, 844
BseGI GGATG 2 cut(s) 96, 613
BseLI CCNNNNNNNGG 4 cut(s) 318, 343, 706, 850
BseMII CTCAG 4 cut(s) 263, 480, 558, 606
BseNI ACTGG 1 cut(s) 352
BseRI GAGGAG 2 cut(s) 93, 329
BseXI GCAGC 3 cut(s) 498, 749, 866
BseYI CCCAGC 1 cut(s) 683
Bsh1236I CGCG 3 cut(s) 209, 276, 358
Bsh1285I CGRYCG 2 cut(s) 156, 280
BshFI GGCC 1 cut(s) 171
BsiEI CGRYCG 2 cut(s) 156, 280
BsiHKAI GWGCWC 1 cut(s) 417
BsiHKCI CYCGRG 2 cut(s) 331, 368
BsiSI CCGG 1 cut(s) 168
BslFI GGGAC 1 cut(s) 556
BslI CCNNNNNNNGG 4 cut(s) 318, 343, 706, 850
BsmAI GTCTC 3 cut(s) 151, 485, 530
BsmBI CGTCTC 2 cut(s) 151, 485
BsmFI GGGAC 1 cut(s) 556
BsmI GAATGC 1 cut(s) 282
BsnI GGCC 1 cut(s) 171
BsoBI CYCGRG 2 cut(s) 331, 368
Bsp119I TTCGAA 2 cut(s) 16, 760
Bsp1286I GDGCHC 1 cut(s) 417
Bsp143I GATC 3 cut(s) 153, 303, 840
Bsp19I CCATGG 1 cut(s) 186
BspACI CCGC 7 cut(s) 128, 139, 191, 244, 280, 299, 588
BspANI GGCC 1 cut(s) 171
BspCNI CTCAG 4 cut(s) 262, 481, 559, 605
BspFNI CGCG 3 cut(s) 209, 276, 358
BspPI GGATC 1 cut(s) 835
BspT104I TTCGAA 2 cut(s) 16, 760
BsrBI CCGCTC 3 cut(s) 141, 246, 588
BsrI ACTGG 1 cut(s) 352
BssECI CCNNGG 7 cut(s) 186, 291, 369, 451, 452, 656, 844
BssMI GATC 3 cut(s) 153, 303, 840
BssT1I CCWWGG 2 cut(s) 186, 656
Bst2UI CCWGG 1 cut(s) 453
Bst4CI ACNGT 2 cut(s) 23, 502
Bst6I CTCTTC 4 cut(s) 86, 252, 805, 813
BstBI TTCGAA 2 cut(s) 16, 760
BstC8I GCNNGC 3 cut(s) 193, 429, 516
BstDEI CTNAG 5 cut(s) 249, 489, 567, 592, 806
BstDSI CCRYGG 2 cut(s) 186, 291
BstF5I GGATG 2 cut(s) 96, 613
BstFNI CGCG 3 cut(s) 209, 276, 358
BstHHI GCGC 3 cut(s) 211, 276, 777
BstKTI GATC 3 cut(s) 156, 306, 843
BstMAI GTCTC 3 cut(s) 151, 485, 530
BstMBI GATC 3 cut(s) 153, 303, 840
BstMCI CGRYCG 2 cut(s) 156, 280
BstMWI GCNNNNNNNGC 3 cut(s) 296, 412, 553
BstNI CCWGG 1 cut(s) 453
BstSCI CCNGG 1 cut(s) 451
BstUI CGCG 3 cut(s) 209, 276, 358
BstV1I GCAGC 3 cut(s) 498, 749, 866
BstV2I GAAGAC 1 cut(s) 621
BstX2I RGATCY 1 cut(s) 840
BstYI RGATCY 1 cut(s) 840
BsuRI GGCC 1 cut(s) 171
BtgI CCRYGG 2 cut(s) 186, 291
BtsCI GGATG 2 cut(s) 96, 613
BtsI GCAGTG 2 cut(s) 202, 269
BtsIMutI CAGTG 3 cut(s) 202, 269, 558
Cac8I GCNNGC 3 cut(s) 193, 429, 516
CfoI GCGC 3 cut(s) 211, 276, 777
CseI GACGC 2 cut(s) 502, 553
CviAII CATG 4 cut(s) 187, 473, 640, 734
DdeI CTNAG 5 cut(s) 249, 489, 567, 592, 806
DpnI GATC 3 cut(s) 155, 305, 842
DpnII GATC 3 cut(s) 153, 303, 840
Eam1104I CTCTTC 4 cut(s) 86, 252, 805, 813
EarI CTCTTC 4 cut(s) 86, 252, 805, 813
EciI GGCGGA 1 cut(s) 314
Ecl136II GAGCTC 1 cut(s) 415
Eco130I CCWWGG 2 cut(s) 186, 656
Eco24I GRGCYC 1 cut(s) 417
Eco32I GATATC 1 cut(s) 470
Eco53kI GAGCTC 1 cut(s) 415
Eco57I CTGAAG 2 cut(s) 428, 582
Eco88I CYCGRG 2 cut(s) 331, 368
EcoICRI GAGCTC 1 cut(s) 415
EcoRII CCWGG 1 cut(s) 451
EcoRV GATATC 1 cut(s) 470
EcoT14I CCWWGG 2 cut(s) 186, 656
EcoT22I ATGCAT 1 cut(s) 528
EcoT38I GRGCYC 1 cut(s) 417
ErhI CCWWGG 2 cut(s) 186, 656
Esp3I CGTCTC 2 cut(s) 151, 485
FaeI CATG 4 cut(s) 190, 476, 643, 737
FalI AAGNNNNNCTT 2 cut(s) 606, 638
FaqI GGGAC 1 cut(s) 556
FatI CATG 4 cut(s) 186, 472, 639, 733
FauI CCCGC 1 cut(s) 184
Fnu4HI GCNGC 6 cut(s) 512, 589, 738, 855, 882, 885
FokI GGATG 2 cut(s) 83, 620
FriOI GRGCYC 1 cut(s) 417
Fsp4HI GCNGC 6 cut(s) 512, 589, 738, 855, 882, 885
FspBI CTAG 2 cut(s) 318, 657
FspI TGCGCA 1 cut(s) 776
GlaI GCGC 3 cut(s) 210, 275, 776
GluI GCNGC 6 cut(s) 512, 589, 738, 855, 882, 885
GsaI CCCAGC 1 cut(s) 687
GsuI CTGGAG 1 cut(s) 242
HaeIII GGCC 1 cut(s) 171
HapII CCGG 1 cut(s) 168
HgaI GACGC 2 cut(s) 502, 553
HhaI GCGC 3 cut(s) 211, 276, 777
Hin1II CATG 4 cut(s) 190, 476, 643, 737
Hin6I GCGC 3 cut(s) 209, 274, 775
HinP1I GCGC 3 cut(s) 209, 274, 775
HincII GTYRAC 1 cut(s) 670
HindII GTYRAC 1 cut(s) 670
HinfI GANTC 3 cut(s) 260, 308, 866
HpaI GTTAAC 1 cut(s) 670
HpaII CCGG 1 cut(s) 168
HphI GGTGA 5 cut(s) 117, 172, 341, 488, 721
Hpy166II GTNNAC 4 cut(s) 312, 349, 670, 826
Hpy188I TCNGA 5 cut(s) 153, 490, 595, 746, 845
Hpy188III TCNNGA 3 cut(s) 221, 264, 605
Hpy8I GTNNAC 4 cut(s) 312, 349, 670, 826
HpyAV CCTTC 4 cut(s) 77, 187, 403, 751
HpyCH4III ACNGT 2 cut(s) 23, 502
HpyCH4V TGCA 3 cut(s) 526, 556, 737
HpyF10VI GCNNNNNNNGC 3 cut(s) 296, 412, 553
HpyF3I CTNAG 5 cut(s) 249, 489, 567, 592, 806
Hsp92II CATG 4 cut(s) 190, 476, 643, 737
HspAI GCGC 3 cut(s) 209, 274, 775
KspAI GTTAAC 1 cut(s) 670
Kzo9I GATC 3 cut(s) 153, 303, 840
LmnI GCTCC 3 cut(s) 50, 146, 412
LpnPI CCDG 9 cut(s) 172, 181, 206, 365, 438, 465, 525, 590, 669
Lsp1109I GCAGC 3 cut(s) 498, 749, 866
MaeI CTAG 2 cut(s) 318, 657
MaeIII GTNAC 2 cut(s) 23, 676
MalI GATC 3 cut(s) 155, 305, 842
MbiI CCGCTC 3 cut(s) 141, 246, 588
MboI GATC 3 cut(s) 153, 303, 840
MboII GAAGA 7 cut(s) 22, 73, 269, 626, 749, 822, 830
MflI RGATCY 1 cut(s) 840
MhlI GDGCHC 1 cut(s) 417
MluCI AATT 4 cut(s) 396, 435, 596, 782
MlyI GAGTC 2 cut(s) 269, 317
MmeI TCCRAC 1 cut(s) 769
Mph1103I ATGCAT 1 cut(s) 528
MroXI GAANNNNTTC 1 cut(s) 230
MseI TTAA 1 cut(s) 669
MslI CAYNNNNRTG 1 cut(s) 185
MspA1I CMGCKG 1 cut(s) 683
MspI CCGG 1 cut(s) 168
MspR9I CCNGG 1 cut(s) 453
Mva1269I GAATGC 1 cut(s) 282
MvaI CCWGG 1 cut(s) 453
MvnI CGCG 3 cut(s) 209, 276, 358
MwoI GCNNNNNNNGC 3 cut(s) 296, 412, 553
NcoI CCATGG 1 cut(s) 186
NdeII GATC 3 cut(s) 153, 303, 840
NlaIII CATG 4 cut(s) 190, 476, 643, 737
NmuCI GTSAC 1 cut(s) 676
NsbI TGCGCA 1 cut(s) 776
NsiI ATGCAT 1 cut(s) 528
NspV TTCGAA 2 cut(s) 16, 760
PaeR7I CTCGAG 1 cut(s) 331
PasI CCCWGGG 1 cut(s) 452
PctI GAATGC 1 cut(s) 282
PdmI GAANNNNTTC 1 cut(s) 230
PfeI GAWTC 1 cut(s) 866
PkrI GCNGC 6 cut(s) 513, 590, 739, 856, 883, 886
Ple19I CGATCG 1 cut(s) 156
PleI GAGTC 2 cut(s) 268, 316
PpsI GAGTC 2 cut(s) 268, 316
Psp124BI GAGCTC 1 cut(s) 417
Psp6I CCWGG 1 cut(s) 451
PspFI CCCAGC 1 cut(s) 683
PspGI CCWGG 1 cut(s) 451
PspXI VCTCGAGB 1 cut(s) 331
PsuI RGATCY 1 cut(s) 840
PvuI CGATCG 1 cut(s) 156
PvuII CAGCTG 1 cut(s) 683
RseI CAYNNNNRTG 1 cut(s) 185
SacI GAGCTC 1 cut(s) 417
SaqAI TTAA 1 cut(s) 669
SatI GCNGC 6 cut(s) 512, 589, 738, 855, 882, 885
Sau3AI GATC 3 cut(s) 153, 303, 840
SchI GAGTC 2 cut(s) 269, 317
ScrFI CCNGG 1 cut(s) 453
SduI GDGCHC 1 cut(s) 417
Sfr274I CTCGAG 1 cut(s) 331
SfuI TTCGAA 2 cut(s) 16, 760
SlaI CTCGAG 1 cut(s) 331
SmiMI CAYNNNNRTG 1 cut(s) 185
SmlI CTYRAG 1 cut(s) 331
SmoI CTYRAG 1 cut(s) 331
Sse9I AATT 4 cut(s) 396, 435, 596, 782
SsiI CCGC 7 cut(s) 128, 139, 191, 244, 280, 299, 588
SspMI CTAG 2 cut(s) 318, 657
SstI GAGCTC 1 cut(s) 417
StyD4I CCNGG 1 cut(s) 451
StyI CCWWGG 2 cut(s) 186, 656
TaaI ACNGT 2 cut(s) 23, 502
TaqI TCGA 7 cut(s) 16, 234, 255, 286, 306, 332, 760
TasI AATT 4 cut(s) 396, 435, 596, 782
TauI GCSGC 1 cut(s) 591
TfiI GAWTC 1 cut(s) 866
Tru1I TTAA 1 cut(s) 669
Tru9I TTAA 1 cut(s) 669
TscAI CASTG 3 cut(s) 202, 276, 565
TseFI GTSAC 1 cut(s) 676
TseI GCWGC 5 cut(s) 511, 737, 854, 881, 884
Tsp45I GTSAC 1 cut(s) 676
TspDTI ATGAA 5 cut(s) 17, 628, 663, 728, 809
TspGWI ACGGA 2 cut(s) 105, 133
TspRI CASTG 3 cut(s) 202, 276, 565
XapI RAATTY 2 cut(s) 596, 782
XcmI CCANNNNNNNNNTGG 1 cut(s) 680
XhoI CTCGAG 1 cut(s) 331
XmaJI CCTAGG 1 cut(s) 656
XmnI GAANNNNTTC 1 cut(s) 230
XspI CTAG 2 cut(s) 318, 657
Zsp2I ATGCAT 1 cut(s) 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.