Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0005043

Physical Location & Seq

Genomic Coordinates Forward (+)

13730084 .. 13732527

Gene Structure 2444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g11490.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGAAGTCAGCGTTTCGAAGCGCCCACTCTCTCTTCCGCTCCCTAAACCCTAACCCTCACCTGACCTCGCTTCTCCTCCCTCTCCGTCTCACACTCCTCACCCCTCCCTCAACTCCGTCCCTGAGACCCCAAATATTTCCCTACCTCTCCGCCACTCTCTCCTCCGCGTCGATGCCTGGCGGCGAACCCCTCACGCCTCCCCCGCTGGAGAAGCAGTTCGATGACTTCCGAGCTCAGCTCGAAGAGTCCGGGACCTTGCGCGAGCGCATTCGAGCTGTGGTTATGGAGATCGAGTCCACCACAAGGCTCATGCACTCCGGCCTCCTCCTAGTTCACCAGTCTCGCTCCACTCCCGAGGTTTTGGAGAAGCCGAAGGGGCAGATTGGCGTGCTGAAGGAGCTCTACAATCGGCTCGCTGAAGTTGTGCGTGGTTCTCCTGGGCAGTACTATAGATATCATGGTGACTGGAGGACTGAGACGCAAACTGTGGTTTCACTGCTTGCGTTTATTCACTGGTTGGAGACAGGGACTCTTTTGTTGCACACTGAAGCTGAAGAAAAACTTGGATTGAACGATTCAGAATTTTGTCTGGATGTTGAAGACTATCTTGTTGGTATTTGTTTCATGTCCAACGAATTGCCGAGGTACGTGGTTAACCAAGTGACTGCTGGGGACTATGACTGTCCAAGAAAGGTGCTTAAGTTTTTGACAGATCTTCATGCAGCCTTCCGTATGCTTAATCTCCGGAATGACTTTTTGCGCAAGAAATTTGATGGTATGAAGTATGACCTGAGAAGGGTTGAAGAAGTTCACTACGATGTTAAGATCAGAGGCTTGACAGCCAGTGGTGCTCCTGTAGAAGACCAAGGACCCCAAGGACCGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Translin

Protein Analysis

296

Amino Acids

33.43

Weight (kDa)

6.52

Isoelectric Point (pI)

50.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37020 AT2G37020 AT2G37020
fragaria_vesca	FvH4_6g16140 FvH4_6g16140 FvH4_6g16140 FvH4_6g16140
malus_domestica	MD12G1115500.v1.1
prunus_persica	Prupe.6G234600_v2.0.a1
pyrus_communis	pycom12g11490
rosa_chinensis	RchiOBHm_Chr1g0341651 RchiOBHm_Chr3g0469981 RchiOBHm_Chr4g0411411
rosa_laevigata	RLG00000024307
rosa_multiflora	Rmu_sc0004149.1_g000011 Rmu_sc0007963.1_g000002 Rmu_sc0020091.1_g000003 Rmu_ssc0000233.1_g000073
rosa_roxburghii	Rroxscaffold_1G00028150 Rroxscaffold_6G00411320
rosa_rugosa	Rorug03G0105900
rosa_samantha	Rh3AG154900 Rh3BG179000 Rh3CG169600 Rh3DG196200 Rh4AG014000 Rh4AG167700 Rh7AG386500 Rh7CG405800
rosa_wichuraiana	Rw3G014590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	761
AccBSI	CCGCTC	1 cut(s)	39
AccII	CGCG	2 cut(s)	167, 261
AccIII	TCCGGA	1 cut(s)	744
AciI	CCGC	6 cut(s)	37, 150, 165, 180, 203, 881
AcsI	RAATTY	2 cut(s)	581, 767
AcuI	CTGAAG	4 cut(s)	413, 438, 567, 573
AfaI	GTAC	2 cut(s)	446, 647
AfiI	CCNNNNNNNGG	2 cut(s)	303, 796
AflII	CTTAAG	1 cut(s)	698
AgsI	TTSAA	3 cut(s)	571, 599, 803
AjnI	CCWGG	2 cut(s)	175, 436
AjuI	GAANNNNNNNTTGG	2 cut(s)	546, 578
AloI	GAACNNNNNNTCC	2 cut(s)	200, 232
AluBI	AGCT	5 cut(s)	233, 238, 275, 400, 551
AluI	AGCT	5 cut(s)	233, 238, 275, 400, 551
Alw21I	GWGCWC	3 cut(s)	235, 402, 853
Alw26I	GTCTC	5 cut(s)	92, 118, 345, 470, 515
Ama87I	CYCGRG	1 cut(s)	353
Aor13HI	TCCGGA	1 cut(s)	744
AoxI	GGCC	1 cut(s)	319
ApeKI	GCWGC	1 cut(s)	722
ApoI	RAATTY	2 cut(s)	581, 767
Asp700I	GAANNNNTTC	2 cut(s)	215, 807
AspLEI	GCGC	4 cut(s)	23, 261, 267, 762
AspS9I	GGNCC	3 cut(s)	252, 869, 878
AsuC2I	CCSGG	1 cut(s)	250
AsuHPI	GGTGA	4 cut(s)	50, 91, 326, 473
AsuII	TTCGAA	1 cut(s)	16
AvaI	CYCGRG	1 cut(s)	353
AvaII	GGWCC	3 cut(s)	252, 869, 878
BanII	GRGCYC	2 cut(s)	235, 402
BarI	GAAGNNNNNNTAC	2 cut(s)	386, 418
BbsI	GAAGAC	2 cut(s)	606, 867
Bbv12I	GWGCWC	3 cut(s)	235, 402, 853
BbvI	GCAGC	1 cut(s)	734
BccI	CCATC	1 cut(s)	767
BciT130I	CCWGG	2 cut(s)	177, 438
BcnI	CCSGG	1 cut(s)	250
BcoDI	GTCTC	5 cut(s)	92, 118, 345, 470, 515
BfaI	CTAG	1 cut(s)	329
BfmI	CTRYAG	2 cut(s)	448, 855
BfoI	RGCGCY	1 cut(s)	24
BfrI	CTTAAG	1 cut(s)	698
BglI	GCCNNNNNGGC	1 cut(s)	376
BglII	AGATCT	1 cut(s)	712
BisI	GCNGC	2 cut(s)	181, 723
BlpI	GCTNAGC	1 cut(s)	234
BlsI	GCNGC	2 cut(s)	182, 724
BmcAI	AGTACT	1 cut(s)	446
Bme1390I	CCNGG	3 cut(s)	177, 250, 438
Bme18I	GGWCC	3 cut(s)	252, 869, 878
BmeT110I	CYCGRG	1 cut(s)	353
BmgT120I	GGNCC	3 cut(s)	252, 869, 878
BmiI	GGNNCC	2 cut(s)	253, 871
BmrFI	CCNGG	3 cut(s)	177, 250, 438
BmsI	GCATC	1 cut(s)	162
BpiI	GAAGAC	2 cut(s)	606, 867
BplI	GAGNNNNNCTC	2 cut(s)	222, 254
BpmI	CTGGAG	2 cut(s)	227, 487
Bpu1102I	GCTNAGC	1 cut(s)	234
Bpu14I	TTCGAA	1 cut(s)	16
BpuMI	CCSGG	1 cut(s)	250
BsaAI	YACGTR	1 cut(s)	649
BsaI	GGTCTC	1 cut(s)	118
BsaJI	CCNNGG	5 cut(s)	354, 437, 641, 865, 874
BsaWI	WCCGGW	1 cut(s)	744
BsaXI	ACNNNNNCTCC	4 cut(s)	200, 230, 278, 308
Bsc4I	CCNNNNNNNGG	2 cut(s)	303, 796
Bse1I	ACTGG	4 cut(s)	337, 470, 518, 843
BseAI	TCCGGA	1 cut(s)	744
BseBI	CCWGG	2 cut(s)	177, 438
BseDI	CCNNGG	5 cut(s)	354, 437, 641, 865, 874
BseGI	GGATG	1 cut(s)	598
BseLI	CCNNNNNNNGG	2 cut(s)	303, 796
BseMII	CTCAG	4 cut(s)	113, 248, 465, 782
BseNI	ACTGG	4 cut(s)	337, 470, 518, 843
BseRI	GAGGAG	4 cut(s)	65, 86, 151, 314
BseXI	GCAGC	1 cut(s)	734
BseYI	CCCAGC	1 cut(s)	668
Bsh1236I	CGCG	2 cut(s)	167, 261
BshFI	GGCC	1 cut(s)	321
BsiHKAI	GWGCWC	3 cut(s)	235, 402, 853
BsiHKCI	CYCGRG	1 cut(s)	353
BsiSI	CCGG	3 cut(s)	249, 318, 745
BslFI	GGGAC	4 cut(s)	103, 265, 541, 686
BslI	CCNNNNNNNGG	2 cut(s)	303, 796
BsmAI	GTCTC	5 cut(s)	92, 118, 345, 470, 515
BsmBI	CGTCTC	2 cut(s)	92, 470
BsmFI	GGGAC	4 cut(s)	103, 265, 541, 686
BsmI	GAATGC	1 cut(s)	267
BsnI	GGCC	1 cut(s)	321
Bso31I	GGTCTC	1 cut(s)	118
BsoBI	CYCGRG	1 cut(s)	353
Bsp119I	TTCGAA	1 cut(s)	16
Bsp1286I	GDGCHC	3 cut(s)	235, 402, 853
Bsp13I	TCCGGA	1 cut(s)	744
Bsp143I	GATC	3 cut(s)	288, 712, 825
Bsp1720I	GCTNAGC	1 cut(s)	234
BspACI	CCGC	6 cut(s)	37, 150, 165, 180, 203, 881
BspANI	GGCC	1 cut(s)	321
BspCNI	CTCAG	4 cut(s)	114, 247, 466, 783
BspEI	TCCGGA	1 cut(s)	744
BspFNI	CGCG	2 cut(s)	167, 261
BspLI	GGNNCC	2 cut(s)	253, 871
BspT104I	TTCGAA	1 cut(s)	16
BspTI	CTTAAG	1 cut(s)	698
BspTNI	GGTCTC	1 cut(s)	118
BsrBI	CCGCTC	1 cut(s)	39
BsrI	ACTGG	4 cut(s)	337, 470, 518, 843
BssECI	CCNNGG	5 cut(s)	354, 437, 641, 865, 874
BssMI	GATC	3 cut(s)	288, 712, 825
BssT1I	CCWWGG	2 cut(s)	865, 874
Bst2UI	CCWGG	2 cut(s)	177, 438
Bst4CI	ACNGT	2 cut(s)	487, 683
Bst6I	CTCTTC	2 cut(s)	38, 237
BstAFI	CTTAAG	1 cut(s)	698
BstBAI	YACGTR	1 cut(s)	649
BstBI	TTCGAA	1 cut(s)	16
BstC8I	GCNNGC	4 cut(s)	263, 389, 414, 501
BstDEI	CTNAG	4 cut(s)	122, 234, 474, 791
BstF5I	GGATG	1 cut(s)	598
BstFNI	CGCG	2 cut(s)	167, 261
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	4 cut(s)	23, 261, 267, 762
BstKTI	GATC	3 cut(s)	291, 715, 828
BstMAI	GTCTC	5 cut(s)	92, 118, 345, 470, 515
BstMBI	GATC	3 cut(s)	288, 712, 825
BstMWI	GCNNNNNNNGC	5 cut(s)	202, 211, 376, 397, 848
BstNI	CCWGG	2 cut(s)	177, 438
BstSCI	CCNGG	3 cut(s)	175, 248, 436
BstSFI	CTRYAG	2 cut(s)	448, 855
BstUI	CGCG	2 cut(s)	167, 261
BstV1I	GCAGC	1 cut(s)	734
BstV2I	GAAGAC	2 cut(s)	606, 867
BstX2I	RGATCY	1 cut(s)	712
BstYI	RGATCY	1 cut(s)	712
BsuRI	GGCC	1 cut(s)	321
BtsCI	GGATG	1 cut(s)	598
BtsI	GCAGTG	1 cut(s)	494
BtsIMutI	CAGTG	4 cut(s)	494, 511, 543, 850
Cac8I	GCNNGC	4 cut(s)	263, 389, 414, 501
CfoI	GCGC	4 cut(s)	23, 261, 267, 762
Cfr13I	GGNCC	3 cut(s)	252, 869, 878
CseI	GACGC	2 cut(s)	156, 487
Csp6I	GTAC	2 cut(s)	445, 646
CviAII	CATG	4 cut(s)	310, 458, 625, 719
CviQI	GTAC	2 cut(s)	445, 646
DdeI	CTNAG	4 cut(s)	122, 234, 474, 791
DpnI	GATC	3 cut(s)	290, 714, 827
DpnII	GATC	3 cut(s)	288, 712, 825
Eam1104I	CTCTTC	2 cut(s)	38, 237
EarI	CTCTTC	2 cut(s)	38, 237
EciI	GGCGGA	1 cut(s)	139
Ecl136II	GAGCTC	2 cut(s)	233, 400
Eco130I	CCWWGG	2 cut(s)	865, 874
Eco24I	GRGCYC	2 cut(s)	235, 402
Eco31I	GGTCTC	1 cut(s)	118
Eco32I	GATATC	1 cut(s)	455
Eco47I	GGWCC	3 cut(s)	252, 869, 878
Eco53kI	GAGCTC	2 cut(s)	233, 400
Eco57I	CTGAAG	4 cut(s)	413, 438, 567, 573
Eco88I	CYCGRG	1 cut(s)	353
EcoICRI	GAGCTC	2 cut(s)	233, 400
EcoO109I	RGGNCCY	2 cut(s)	252, 869
EcoRII	CCWGG	2 cut(s)	175, 436
EcoRV	GATATC	1 cut(s)	455
EcoT14I	CCWWGG	2 cut(s)	865, 874
EcoT38I	GRGCYC	2 cut(s)	235, 402
ErhI	CCWWGG	2 cut(s)	865, 874
Esp3I	CGTCTC	2 cut(s)	92, 470
FaeI	CATG	4 cut(s)	313, 461, 628, 722
FalI	AAGNNNNNCTT	4 cut(s)	546, 578, 591, 623
FaqI	GGGAC	4 cut(s)	103, 265, 541, 686
FatI	CATG	4 cut(s)	309, 457, 624, 718
FauI	CCCGC	1 cut(s)	210
Fnu4HI	GCNGC	2 cut(s)	181, 723
FokI	GGATG	1 cut(s)	605
FriOI	GRGCYC	2 cut(s)	235, 402
Fsp4HI	GCNGC	2 cut(s)	181, 723
FspBI	CTAG	1 cut(s)	329
FspI	TGCGCA	1 cut(s)	761
GlaI	GCGC	4 cut(s)	22, 260, 266, 761
GluI	GCNGC	2 cut(s)	181, 723
GsaI	CCCAGC	1 cut(s)	672
GsuI	CTGGAG	2 cut(s)	227, 487
HaeII	RGCGCY	1 cut(s)	24
HaeIII	GGCC	1 cut(s)	321
HapII	CCGG	3 cut(s)	249, 318, 745
HgaI	GACGC	2 cut(s)	156, 487
HhaI	GCGC	4 cut(s)	23, 261, 267, 762
Hin1II	CATG	4 cut(s)	313, 461, 628, 722
Hin6I	GCGC	4 cut(s)	21, 259, 265, 760
HinP1I	GCGC	4 cut(s)	21, 259, 265, 760
HincII	GTYRAC	1 cut(s)	655
HindII	GTYRAC	1 cut(s)	655
HinfI	GANTC	4 cut(s)	245, 293, 529, 575
HpaI	GTTAAC	1 cut(s)	655
HpaII	CCGG	3 cut(s)	249, 318, 745
HphI	GGTGA	4 cut(s)	50, 91, 326, 473
Hpy166II	GTNNAC	4 cut(s)	297, 334, 655, 811
Hpy188I	TCNGA	3 cut(s)	230, 580, 830
Hpy188III	TCNNGA	3 cut(s)	353, 590, 745
Hpy8I	GTNNAC	4 cut(s)	297, 334, 655, 811
Hpy99I	CGWCG	1 cut(s)	172
HpyAV	CCTTC	4 cut(s)	367, 388, 736, 789
HpyCH4III	ACNGT	2 cut(s)	487, 683
HpyCH4IV	ACGT	1 cut(s)	648
HpyCH4V	TGCA	3 cut(s)	313, 541, 722
HpyF10VI	GCNNNNNNNGC	5 cut(s)	202, 211, 376, 397, 848
HpyF3I	CTNAG	4 cut(s)	122, 234, 474, 791
HpySE526I	ACGT	1 cut(s)	648
Hsp92II	CATG	4 cut(s)	313, 461, 628, 722
HspAI	GCGC	4 cut(s)	21, 259, 265, 760
Kpn2I	TCCGGA	1 cut(s)	744
KspAI	GTTAAC	1 cut(s)	655
Kzo9I	GATC	3 cut(s)	288, 712, 825
LmnI	GCTCC	4 cut(s)	44, 350, 397, 856
Lsp1109I	GCAGC	1 cut(s)	734
LweI	GCATC	1 cut(s)	162
MaeI	CTAG	1 cut(s)	329
MaeII	ACGT	1 cut(s)	648
MaeIII	GTNAC	2 cut(s)	461, 661
MalI	GATC	3 cut(s)	290, 714, 827
MbiI	CCGCTC	1 cut(s)	39
MboI	GATC	3 cut(s)	288, 712, 825
MboII	GAAGA	7 cut(s)	25, 254, 566, 611, 707, 815, 872
MflI	RGATCY	1 cut(s)	712
MhlI	GDGCHC	3 cut(s)	235, 402, 853
MluCI	AATT	3 cut(s)	581, 635, 767
MlyI	GAGTC	3 cut(s)	254, 302, 523
MmeI	TCCRAC	2 cut(s)	498, 654
MroI	TCCGGA	1 cut(s)	744
MroXI	GAANNNNTTC	2 cut(s)	215, 807
MseI	TTAA	4 cut(s)	654, 699, 738, 822
MslI	CAYNNNNRTG	1 cut(s)	816
MspA1I	CMGCKG	1 cut(s)	205
MspCI	CTTAAG	1 cut(s)	698
MspI	CCGG	3 cut(s)	249, 318, 745
MspR9I	CCNGG	3 cut(s)	177, 250, 438
Mva1269I	GAATGC	1 cut(s)	267
MvaI	CCWGG	2 cut(s)	177, 438
MvnI	CGCG	2 cut(s)	167, 261
MwoI	GCNNNNNNNGC	5 cut(s)	202, 211, 376, 397, 848
NciI	CCSGG	1 cut(s)	250
NdeII	GATC	3 cut(s)	288, 712, 825
NlaIII	CATG	4 cut(s)	313, 461, 628, 722
NlaIV	GGNNCC	2 cut(s)	253, 871
NmeAIII	GCCGAG	1 cut(s)	666
NmuCI	GTSAC	2 cut(s)	461, 661
NsbI	TGCGCA	1 cut(s)	761
NspV	TTCGAA	1 cut(s)	16
PctI	GAATGC	1 cut(s)	267
PdmI	GAANNNNTTC	2 cut(s)	215, 807
PfeI	GAWTC	1 cut(s)	575
PfoI	TCCNGGA	1 cut(s)	248
PkrI	GCNGC	2 cut(s)	182, 724
PleI	GAGTC	3 cut(s)	253, 301, 523
PpsI	GAGTC	3 cut(s)	253, 301, 523
Ppu21I	YACGTR	1 cut(s)	649
PpuMI	RGGWCCY	2 cut(s)	252, 869
Psp124BI	GAGCTC	2 cut(s)	235, 402
Psp5II	RGGWCCY	2 cut(s)	252, 869
Psp6I	CCWGG	2 cut(s)	175, 436
PspFI	CCCAGC	1 cut(s)	668
PspGI	CCWGG	2 cut(s)	175, 436
PspN4I	GGNNCC	2 cut(s)	253, 871
PspPI	GGNCC	3 cut(s)	252, 869, 878
PspPPI	RGGWCCY	2 cut(s)	252, 869
PsuI	RGATCY	1 cut(s)	712
RsaI	GTAC	2 cut(s)	446, 647
RsaNI	GTAC	2 cut(s)	445, 646
RseI	CAYNNNNRTG	1 cut(s)	816
SacI	GAGCTC	2 cut(s)	235, 402
SaqAI	TTAA	4 cut(s)	654, 699, 738, 822
SatI	GCNGC	2 cut(s)	181, 723
Sau3AI	GATC	3 cut(s)	288, 712, 825
Sau96I	GGNCC	3 cut(s)	252, 869, 878
ScaI	AGTACT	1 cut(s)	446
SchI	GAGTC	3 cut(s)	254, 302, 523
ScrFI	CCNGG	3 cut(s)	177, 250, 438
SduI	GDGCHC	3 cut(s)	235, 402, 853
SfaNI	GCATC	1 cut(s)	162
SfcI	CTRYAG	2 cut(s)	448, 855
SfuI	TTCGAA	1 cut(s)	16
SinI	GGWCC	3 cut(s)	252, 869, 878
SmiMI	CAYNNNNRTG	1 cut(s)	816
SmlI	CTYRAG	1 cut(s)	698
SmoI	CTYRAG	1 cut(s)	698
Sse9I	AATT	3 cut(s)	581, 635, 767
SsiI	CCGC	6 cut(s)	37, 150, 165, 180, 203, 881
SspI	AATATT	1 cut(s)	135
SspMI	CTAG	1 cut(s)	329
SstI	GAGCTC	2 cut(s)	235, 402
StyD4I	CCNGG	3 cut(s)	175, 248, 436
StyI	CCWWGG	2 cut(s)	865, 874
TaaI	ACNGT	2 cut(s)	487, 683
TaiI	ACGT	1 cut(s)	651
TaqI	TCGA	6 cut(s)	16, 170, 219, 240, 271, 291
TasI	AATT	3 cut(s)	581, 635, 767
TatI	WGTACW	1 cut(s)	444
TauI	GCSGC	1 cut(s)	183
TfiI	GAWTC	1 cut(s)	575
Tru1I	TTAA	4 cut(s)	654, 699, 738, 822
Tru9I	TTAA	4 cut(s)	654, 699, 738, 822
TscAI	CASTG	4 cut(s)	501, 518, 550, 850
TseFI	GTSAC	2 cut(s)	461, 661
TseI	GCWGC	1 cut(s)	722
Tsp45I	GTSAC	2 cut(s)	461, 661
TspDTI	ATGAA	4 cut(s)	17, 613, 707, 794
TspGWI	ACGGA	3 cut(s)	74, 105, 719
TspRI	CASTG	4 cut(s)	501, 518, 550, 850
Vha464I	CTTAAG	1 cut(s)	698
VpaK11BI	GGWCC	3 cut(s)	252, 869, 878
XapI	RAATTY	2 cut(s)	581, 767
XcmI	CCANNNNNNNNNTGG	1 cut(s)	665
XmnI	GAANNNNTTC	2 cut(s)	215, 807
XspI	CTAG	1 cut(s)	329
ZrmI	AGTACT	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.