Rmu_ssc0000233.1_g000073

Translin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000233.1
OG0005043
Physical Location & Seq
Forward (+)
312821 .. 313449
629 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000233.1_g000073.1.cds

Sequence Viewer

Length: 552 bp
atgaaatcttgctatttagcttctctattgtgtaccagtgttctaaaactcggccgcctaggagctgggcggcacctcttcgccgcgagtaatgacaaatcggggtatctaggcgttttgattttcagcgggcgcctaggtggattaggcgtctcgctccgtgcggcttctctctctccttcgttcccactgcgtccctccactccttcagtcttcagccctcactcaactccgcccatctcaccgcccccattccggttcgtctctccgattgctagaattttcggcctttccttcacctccatggcgagcggtgaaccccacgcgcttccacttctagagaagcaattcgatgacttccgctctcagctagaagagtccggaacactgcgcggccgtattcaagccgtgatcatggagatcgagtccaccactaggtttattcactcgagcctcctcttggttcaccagtcgtgttcaactcccggtacggtgccgtttttgagtgaagtgattgtaatacgttttcgttttgtgattgttattggttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Translin

Protein Analysis

183

Amino Acids

19.76

Weight (kDa)

10.03

Isoelectric Point (pI)

56.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 72, 132, 493
AccBSI CCGCTC 2 cut(s) 312, 363
AccII CGCG 3 cut(s) 86, 326, 393
AccIII TCCGGA 1 cut(s) 380
AcoI YGGCCR 2 cut(s) 52, 394
AcsI RAATTY 1 cut(s) 279
AcuI CTGAAG 2 cut(s) 192, 199
AcyI GRCGYC 2 cut(s) 133, 150
AfaI GTAC 2 cut(s) 34, 490
AfiI CCNNNNNNNGG 3 cut(s) 255, 435, 460
AgsI TTSAA 2 cut(s) 404, 480
AluBI AGCT 3 cut(s) 20, 65, 370
AluI AGCT 3 cut(s) 20, 65, 370
Alw26I GTCTC 2 cut(s) 157, 268
Ama87I CYCGRG 1 cut(s) 448
Aor13HI TCCGGA 1 cut(s) 380
AoxI GGCC 3 cut(s) 52, 286, 394
ApoI RAATTY 1 cut(s) 279
Asp700I GAANNNNTTC 1 cut(s) 347
AspA2I CCTAGG 2 cut(s) 58, 136
AspLEI GCGC 3 cut(s) 135, 328, 393
AsuC2I CCSGG 1 cut(s) 486
AsuHPI GGTGA 4 cut(s) 234, 289, 326, 458
AvaI CYCGRG 1 cut(s) 448
AvrII CCTAGG 2 cut(s) 58, 136
BanI GGYRCC 3 cut(s) 72, 132, 493
BbsI GAAGAC 1 cut(s) 205
BccI CCATC 1 cut(s) 245
BceAI ACGGC 3 cut(s) 381, 392, 481
BclI TGATCA 1 cut(s) 411
BcnI CCSGG 1 cut(s) 486
BcoDI GTCTC 2 cut(s) 157, 268
BfaI CTAG 7 cut(s) 59, 110, 137, 276, 338, 371, 435
BfoI RGCGCY 1 cut(s) 136
BisI GCNGC 5 cut(s) 55, 71, 84, 165, 394
BlnI CCTAGG 2 cut(s) 58, 136
BlsI GCNGC 5 cut(s) 56, 72, 85, 166, 395
Bme1390I CCNGG 1 cut(s) 486
BmeT110I CYCGRG 1 cut(s) 448
BmiI GGNNCC 3 cut(s) 74, 134, 495
BmrFI CCNGG 1 cut(s) 486
BpiI GAAGAC 1 cut(s) 205
BpuMI CCSGG 1 cut(s) 486
BsaHI GRCGYC 2 cut(s) 133, 150
BsaJI CCNNGG 3 cut(s) 58, 136, 303
BsaWI WCCGGW 2 cut(s) 255, 380
BsaXI ACNNNNNCTCC 2 cut(s) 410, 440
Bsc4I CCNNNNNNNGG 3 cut(s) 255, 435, 460
Bse1I ACTGG 2 cut(s) 36, 469
BseAI TCCGGA 1 cut(s) 380
BseDI CCNNGG 3 cut(s) 58, 136, 303
BseLI CCNNNNNNNGG 3 cut(s) 255, 435, 460
BseMII CTCAG 1 cut(s) 380
BseNI ACTGG 2 cut(s) 36, 469
BseRI GAGGAG 1 cut(s) 446
BseX3I CGGCCG 2 cut(s) 52, 394
BseYI CCCAGC 1 cut(s) 65
Bsh1236I CGCG 3 cut(s) 86, 326, 393
Bsh1285I CGRYCG 2 cut(s) 55, 397
BshFI GGCC 3 cut(s) 54, 288, 396
BshNI GGYRCC 3 cut(s) 72, 132, 493
BsiEI CGRYCG 2 cut(s) 55, 397
BsiHKCI CYCGRG 1 cut(s) 448
BsiSI CCGG 3 cut(s) 256, 381, 486
BslFI GGGAC 1 cut(s) 180
BslI CCNNNNNNNGG 3 cut(s) 255, 435, 460
BsmAI GTCTC 2 cut(s) 157, 268
BsmBI CGTCTC 2 cut(s) 157, 268
BsmFI GGGAC 1 cut(s) 180
BsnI GGCC 3 cut(s) 54, 288, 396
BsoBI CYCGRG 1 cut(s) 448
Bsp13I TCCGGA 1 cut(s) 380
Bsp143I GATC 2 cut(s) 411, 420
Bsp19I CCATGG 1 cut(s) 303
BspANI GGCC 3 cut(s) 54, 288, 396
BspCNI CTCAG 1 cut(s) 379
BspEI TCCGGA 1 cut(s) 380
BspFNI CGCG 3 cut(s) 86, 326, 393
BspLI GGNNCC 3 cut(s) 74, 134, 495
BspT107I GGYRCC 3 cut(s) 72, 132, 493
BsrBI CCGCTC 2 cut(s) 312, 363
BsrI ACTGG 2 cut(s) 36, 469
BssECI CCNNGG 3 cut(s) 58, 136, 303
BssMI GATC 2 cut(s) 411, 420
BssNI GRCGYC 2 cut(s) 133, 150
BssT1I CCWWGG 3 cut(s) 58, 136, 303
Bst4CI ACNGT 1 cut(s) 493
Bst6I CTCTTC 2 cut(s) 83, 369
BstACI GRCGYC 2 cut(s) 133, 150
BstC8I GCNNGC 2 cut(s) 131, 310
BstDEI CTNAG 1 cut(s) 366
BstDSI CCRYGG 1 cut(s) 303
BstFNI CGCG 3 cut(s) 86, 326, 393
BstH2I RGCGCY 1 cut(s) 136
BstHHI GCGC 3 cut(s) 135, 328, 393
BstKTI GATC 2 cut(s) 414, 423
BstMAI GTCTC 2 cut(s) 157, 268
BstMBI GATC 2 cut(s) 411, 420
BstMCI CGRYCG 2 cut(s) 55, 397
BstSCI CCNGG 1 cut(s) 484
BstUI CGCG 3 cut(s) 86, 326, 393
BstV2I GAAGAC 1 cut(s) 205
BstZI CGGCCG 2 cut(s) 52, 394
BsuRI GGCC 3 cut(s) 54, 288, 396
BtgI CCRYGG 1 cut(s) 303
BtsI GCAGTG 2 cut(s) 188, 386
BtsIMutI CAGTG 3 cut(s) 43, 188, 386
Cac8I GCNNGC 2 cut(s) 131, 310
CfoI GCGC 3 cut(s) 135, 328, 393
CseI GACGC 2 cut(s) 139, 182
Csp6I GTAC 2 cut(s) 33, 489
CviAII CATG 2 cut(s) 304, 415
CviQI GTAC 2 cut(s) 33, 489
DdeI CTNAG 1 cut(s) 366
DinI GGCGCC 1 cut(s) 134
DpnI GATC 2 cut(s) 413, 422
DpnII GATC 2 cut(s) 411, 420
EaeI YGGCCR 2 cut(s) 52, 394
EagI CGGCCG 2 cut(s) 52, 394
Eam1104I CTCTTC 2 cut(s) 83, 369
EarI CTCTTC 2 cut(s) 83, 369
EciI GGCGGA 1 cut(s) 222
EclXI CGGCCG 2 cut(s) 52, 394
Eco130I CCWWGG 3 cut(s) 58, 136, 303
Eco52I CGGCCG 2 cut(s) 52, 394
Eco57I CTGAAG 2 cut(s) 192, 199
Eco88I CYCGRG 1 cut(s) 448
EcoT14I CCWWGG 3 cut(s) 58, 136, 303
EgeI GGCGCC 1 cut(s) 134
EheI GGCGCC 1 cut(s) 134
ErhI CCWWGG 3 cut(s) 58, 136, 303
Esp3I CGTCTC 2 cut(s) 157, 268
FaeI CATG 2 cut(s) 307, 418
FaiI YATR 2 cut(s) 305, 416
FaqI GGGAC 1 cut(s) 180
FatI CATG 2 cut(s) 303, 414
FauI CCCGC 1 cut(s) 122
FbaI TGATCA 1 cut(s) 411
Fnu4HI GCNGC 5 cut(s) 55, 71, 84, 165, 394
Fsp4HI GCNGC 5 cut(s) 55, 71, 84, 165, 394
FspBI CTAG 7 cut(s) 59, 110, 137, 276, 338, 371, 435
GlaI GCGC 3 cut(s) 134, 327, 392
GluI GCNGC 5 cut(s) 55, 71, 84, 165, 394
GsaI CCCAGC 1 cut(s) 69
HaeII RGCGCY 1 cut(s) 136
HaeIII GGCC 3 cut(s) 54, 288, 396
HapII CCGG 3 cut(s) 256, 381, 486
HgaI GACGC 2 cut(s) 139, 182
HhaI GCGC 3 cut(s) 135, 328, 393
Hin1I GRCGYC 2 cut(s) 133, 150
Hin1II CATG 2 cut(s) 307, 418
Hin6I GCGC 3 cut(s) 133, 326, 391
HinP1I GCGC 3 cut(s) 133, 326, 391
HinfI GANTC 2 cut(s) 377, 425
HpaII CCGG 3 cut(s) 256, 381, 486
HphI GGTGA 4 cut(s) 234, 289, 326, 458
Hpy166II GTNNAC 4 cut(s) 33, 317, 429, 466
Hpy188I TCNGA 1 cut(s) 270
Hpy188III TCNNGA 2 cut(s) 338, 381
Hpy8I GTNNAC 4 cut(s) 33, 317, 429, 466
HpyAV CCTTC 3 cut(s) 189, 216, 304
HpyCH4III ACNGT 1 cut(s) 493
HpyCH4IV ACGT 1 cut(s) 523
HpyF3I CTNAG 1 cut(s) 366
HpySE526I ACGT 1 cut(s) 523
Hsp92I GRCGYC 2 cut(s) 133, 150
Hsp92II CATG 2 cut(s) 307, 418
HspAI GCGC 3 cut(s) 133, 326, 391
KasI GGCGCC 1 cut(s) 132
Kpn2I TCCGGA 1 cut(s) 380
Ksp22I TGATCA 1 cut(s) 411
Kzo9I GATC 2 cut(s) 411, 420
LmnI GCTCC 2 cut(s) 62, 162
LpnPI CCDG 6 cut(s) 49, 51, 269, 394, 482, 499
MaeI CTAG 7 cut(s) 59, 110, 137, 276, 338, 371, 435
MaeII ACGT 1 cut(s) 523
MalI GATC 2 cut(s) 413, 422
MbiI CCGCTC 2 cut(s) 312, 363
MboI GATC 2 cut(s) 411, 420
MboII GAAGA 3 cut(s) 70, 205, 386
MluCI AATT 2 cut(s) 279, 347
Mly113I GGCGCC 1 cut(s) 133
MlyI GAGTC 2 cut(s) 386, 434
MnlI CCTC 6 cut(s) 86, 208, 231, 310, 464, 467
MroI TCCGGA 1 cut(s) 380
MroXI GAANNNNTTC 1 cut(s) 347
MseI TTAA 1 cut(s) 550
MslI CAYNNNNRTG 1 cut(s) 302
MspA1I CMGCKG 1 cut(s) 129
MspI CCGG 3 cut(s) 256, 381, 486
MspR9I CCNGG 1 cut(s) 486
MvnI CGCG 3 cut(s) 86, 326, 393
NarI GGCGCC 1 cut(s) 133
NciI CCSGG 1 cut(s) 486
NcoI CCATGG 1 cut(s) 303
NdeII GATC 2 cut(s) 411, 420
NlaIII CATG 2 cut(s) 307, 418
NlaIV GGNNCC 3 cut(s) 74, 134, 495
NmeAIII GCCGAG 1 cut(s) 30
PaeR7I CTCGAG 1 cut(s) 448
PdmI GAANNNNTTC 1 cut(s) 347
PkrI GCNGC 5 cut(s) 56, 72, 85, 166, 395
PleI GAGTC 2 cut(s) 385, 433
PluTI GGCGCC 1 cut(s) 136
PpsI GAGTC 2 cut(s) 385, 433
PspFI CCCAGC 1 cut(s) 65
PspN4I GGNNCC 3 cut(s) 74, 134, 495
PspXI VCTCGAGB 1 cut(s) 448
RsaI GTAC 2 cut(s) 34, 490
RsaNI GTAC 2 cut(s) 33, 489
RseI CAYNNNNRTG 1 cut(s) 302
SaqAI TTAA 1 cut(s) 550
SatI GCNGC 5 cut(s) 55, 71, 84, 165, 394
Sau3AI GATC 2 cut(s) 411, 420
SchI GAGTC 2 cut(s) 386, 434
ScrFI CCNGG 1 cut(s) 486
SetI ASST 8 cut(s) 22, 67, 78, 142, 302, 372, 440, 526
SfoI GGCGCC 1 cut(s) 134
Sfr274I CTCGAG 1 cut(s) 448
SlaI CTCGAG 1 cut(s) 448
SmiMI CAYNNNNRTG 1 cut(s) 302
SmlI CTYRAG 1 cut(s) 448
SmoI CTYRAG 1 cut(s) 448
Sse9I AATT 2 cut(s) 279, 347
SspDI GGCGCC 1 cut(s) 132
SspMI CTAG 7 cut(s) 59, 110, 137, 276, 338, 371, 435
StyD4I CCNGG 1 cut(s) 484
StyI CCWWGG 3 cut(s) 58, 136, 303
TaaI ACNGT 1 cut(s) 493
TaiI ACGT 1 cut(s) 526
TaqI TCGA 3 cut(s) 351, 423, 449
TasI AATT 2 cut(s) 279, 347
TauI GCSGC 5 cut(s) 57, 73, 86, 167, 396
Tru1I TTAA 1 cut(s) 550
Tru9I TTAA 1 cut(s) 550
TscAI CASTG 3 cut(s) 43, 195, 393
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 149
TspRI CASTG 3 cut(s) 43, 195, 393
XapI RAATTY 1 cut(s) 279
XbaI TCTAGA 1 cut(s) 337
XhoI CTCGAG 1 cut(s) 448
XmaJI CCTAGG 2 cut(s) 58, 136
XmnI GAANNNNTTC 1 cut(s) 347
XspI CTAG 7 cut(s) 59, 110, 137, 276, 338, 371, 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.