Rroxscaffold_6G00411320

Translin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0005043
Physical Location & Seq
Forward (+)
33827907 .. 33830865
2959 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00411320.1

Sequence Viewer

Length: 894 bp
ATGAAATCAGCGTTTCGAAACGGTTACTTCTTCACACACTCTCGCTCCTTAAACCCTAACCCTAACCTTGTCTCCACTCTCTTCTCTCTCCATCACATCCCTCCTCACTCATCTCCGTCCATCTCACAGCCCCCATTCCGCTCCGTCTCTCCGATCGCCAGAATTTCCGGCCTCTCCTTCACCTCCATGGCGGGCGGTGAACCCCACGCGCTTCCACTGCTGGAGAAGCAGTTCGATGACTTCCGCTCTCAGCTCGAAGAGTCGGGAACACTGCGCGACCGCATTCGAGCCGTGGTGGTGGAGATCGAGTCCACCTCTAGGTTTATTCACTCGAGCCTCCTCTTGGTTCACCAGTCGCGTTCAACACCCGCAGAGGTTTTGGAGAAGCCAAAGGCTCAAATTGTTGTGCTGAAGGAGCTCTACAATCGGCTCGCTGAAATTGTGCGTGAAAGCCCTGGGGGATATTACAGATATCATGGTGATTGGAAGTCTGAGACGCAGACTGTGGTTTCGCTGCTTGCTTTTATGCATTGGTTAGAGACAGGGACGCTTTTGTTGCACACTGAAGCTGGGGAAAAACTTGGGTTGAGCGGCTCAGAATTTGGTCTGGATGTTGAAGACTATCTTGTTGGTATTTGCTTCATGTCTAATGAACTGCCTAGGTATGTGGTTAACCAAGTGACAGCTGGGGATTATGATTGCCCAAGAAAGGTGATGAAGTTTTTGACAGACCTCCATGCAGCCTTCCGACTGCTCAATCTTCGAAATGACTTTTTGCGCAAGAAATTTGATGGTATGAAGTATGACCTAAGAAGAGTTGAAGAGGTTTACTATGATGTAAAGATCCGAGGCTTGGCAGCCAATGTGGATTCCGTGGAAAAGCCAGCAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Translin

Protein Analysis

297

Amino Acids

33.65

Weight (kDa)

7.19

Isoelectric Point (pI)

50.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Translin PF01997 91 - 284 1.2e-56 Translin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 779
AccBSI CCGCTC 3 cut(s) 141, 246, 591
AccII CGCG 3 cut(s) 209, 276, 358
AciI CCGC 7 cut(s) 139, 191, 195, 244, 280, 369, 591
AclWI GGATC 1 cut(s) 838
AcsI RAATTY 3 cut(s) 162, 599, 785
AcuI CTGAAG 2 cut(s) 431, 585
AfiI CCNNNNNNNGG 4 cut(s) 318, 343, 709, 853
AgsI TTSAA 3 cut(s) 363, 617, 821
AjnI CCWGG 1 cut(s) 454
AloI GAACNNNNNNTCC 2 cut(s) 215, 247
AluBI AGCT 4 cut(s) 253, 418, 569, 686
AluI AGCT 4 cut(s) 253, 418, 569, 686
Alw21I GWGCWC 1 cut(s) 420
Alw26I GTCTC 4 cut(s) 76, 151, 488, 533
AlwI GGATC 1 cut(s) 838
Ama87I CYCGRG 1 cut(s) 331
AoxI GGCC 1 cut(s) 169
ApeKI GCWGC 4 cut(s) 514, 740, 857, 887
ApoI RAATTY 3 cut(s) 162, 599, 785
ArsI GACNNNNNNTTYG 2 cut(s) 493, 525
Asp700I GAANNNNTTC 1 cut(s) 230
AspA2I CCTAGG 1 cut(s) 659
AspLEI GCGC 3 cut(s) 211, 276, 780
AsuHPI GGTGA 5 cut(s) 172, 209, 341, 491, 724
AsuII TTCGAA 2 cut(s) 16, 763
AvaI CYCGRG 1 cut(s) 331
AvrII CCTAGG 1 cut(s) 659
BanII GRGCYC 1 cut(s) 420
BarI GAAGNNNNNNTAC 2 cut(s) 404, 436
BbsI GAAGAC 1 cut(s) 624
Bbv12I GWGCWC 1 cut(s) 420
BbvI GCAGC 3 cut(s) 501, 752, 869
BccI CCATC 3 cut(s) 99, 128, 785
BceAI ACGGC 1 cut(s) 275
BciT130I CCWGG 1 cut(s) 456
BcoDI GTCTC 4 cut(s) 76, 151, 488, 533
BfaI CTAG 2 cut(s) 318, 660
BisI GCNGC 5 cut(s) 515, 592, 741, 858, 888
BlnI CCTAGG 1 cut(s) 659
BlsI GCNGC 5 cut(s) 516, 593, 742, 859, 889
Bme1390I CCNGG 1 cut(s) 456
BmeT110I CYCGRG 1 cut(s) 331
BmrFI CCNGG 1 cut(s) 456
BpiI GAAGAC 1 cut(s) 624
BplI GAGNNNNNCTC 2 cut(s) 299, 331
BpmI CTGGAG 1 cut(s) 242
Bpu14I TTCGAA 2 cut(s) 16, 763
BsaJI CCNNGG 7 cut(s) 186, 291, 454, 455, 659, 847, 873
BsaXI ACNNNNNCTCC 8 cut(s) 29, 56, 59, 86, 215, 245, 293, 323
Bsc4I CCNNNNNNNGG 4 cut(s) 318, 343, 709, 853
Bse1I ACTGG 1 cut(s) 352
BseBI CCWGG 1 cut(s) 456
BseDI CCNNGG 7 cut(s) 186, 291, 454, 455, 659, 847, 873
BseGI GGATG 2 cut(s) 96, 616
BseLI CCNNNNNNNGG 4 cut(s) 318, 343, 709, 853
BseMII CTCAG 3 cut(s) 263, 483, 609
BseNI ACTGG 1 cut(s) 352
BseRI GAGGAG 2 cut(s) 93, 329
BseXI GCAGC 3 cut(s) 501, 752, 869
BseYI CCCAGC 2 cut(s) 569, 686
Bsh1236I CGCG 3 cut(s) 209, 276, 358
Bsh1285I CGRYCG 2 cut(s) 156, 280
BshFI GGCC 1 cut(s) 171
BsiEI CGRYCG 2 cut(s) 156, 280
BsiHKAI GWGCWC 1 cut(s) 420
BsiHKCI CYCGRG 1 cut(s) 331
BsiSI CCGG 1 cut(s) 168
BslFI GGGAC 1 cut(s) 559
BslI CCNNNNNNNGG 4 cut(s) 318, 343, 709, 853
BsmAI GTCTC 4 cut(s) 76, 151, 488, 533
BsmBI CGTCTC 2 cut(s) 151, 488
BsmFI GGGAC 1 cut(s) 559
BsmI GAATGC 1 cut(s) 282
BsnI GGCC 1 cut(s) 171
BsoBI CYCGRG 1 cut(s) 331
Bsp119I TTCGAA 2 cut(s) 16, 763
Bsp1286I GDGCHC 1 cut(s) 420
Bsp143I GATC 3 cut(s) 153, 303, 843
Bsp19I CCATGG 1 cut(s) 186
BspACI CCGC 7 cut(s) 139, 191, 195, 244, 280, 369, 591
BspANI GGCC 1 cut(s) 171
BspCNI CTCAG 3 cut(s) 262, 484, 608
BspFNI CGCG 3 cut(s) 209, 276, 358
BspPI GGATC 1 cut(s) 838
BspT104I TTCGAA 2 cut(s) 16, 763
BsrBI CCGCTC 3 cut(s) 141, 246, 591
BsrI ACTGG 1 cut(s) 352
BssECI CCNNGG 7 cut(s) 186, 291, 454, 455, 659, 847, 873
BssMI GATC 3 cut(s) 153, 303, 843
BssT1I CCWWGG 2 cut(s) 186, 659
Bst2UI CCWGG 1 cut(s) 456
Bst4CI ACNGT 2 cut(s) 23, 505
Bst6I CTCTTC 4 cut(s) 86, 252, 808, 816
BstBI TTCGAA 2 cut(s) 16, 763
BstC8I GCNNGC 4 cut(s) 193, 432, 519, 885
BstDEI CTNAG 4 cut(s) 249, 492, 595, 809
BstDSI CCRYGG 3 cut(s) 186, 291, 873
BstF5I GGATG 2 cut(s) 96, 616
BstFNI CGCG 3 cut(s) 209, 276, 358
BstHHI GCGC 3 cut(s) 211, 276, 780
BstKTI GATC 3 cut(s) 156, 306, 846
BstMAI GTCTC 4 cut(s) 76, 151, 488, 533
BstMBI GATC 3 cut(s) 153, 303, 843
BstMCI CGRYCG 2 cut(s) 156, 280
BstMWI GCNNNNNNNGC 4 cut(s) 217, 226, 415, 556
BstNI CCWGG 1 cut(s) 456
BstSCI CCNGG 1 cut(s) 454
BstUI CGCG 3 cut(s) 209, 276, 358
BstV1I GCAGC 3 cut(s) 501, 752, 869
BstV2I GAAGAC 1 cut(s) 624
BstX2I RGATCY 1 cut(s) 843
BstYI RGATCY 1 cut(s) 843
BsuRI GGCC 1 cut(s) 171
BtgI CCRYGG 3 cut(s) 186, 291, 873
BtsCI GGATG 2 cut(s) 96, 616
BtsI GCAGTG 2 cut(s) 215, 269
BtsIMutI CAGTG 3 cut(s) 215, 269, 561
Cac8I GCNNGC 4 cut(s) 193, 432, 519, 885
CfoI GCGC 3 cut(s) 211, 276, 780
CseI GACGC 2 cut(s) 505, 556
CviAII CATG 4 cut(s) 187, 476, 643, 737
DdeI CTNAG 4 cut(s) 249, 492, 595, 809
DpnI GATC 3 cut(s) 155, 305, 845
DpnII GATC 3 cut(s) 153, 303, 843
Eam1104I CTCTTC 4 cut(s) 86, 252, 808, 816
EarI CTCTTC 4 cut(s) 86, 252, 808, 816
Ecl136II GAGCTC 1 cut(s) 418
Eco130I CCWWGG 2 cut(s) 186, 659
Eco24I GRGCYC 1 cut(s) 420
Eco32I GATATC 1 cut(s) 473
Eco53kI GAGCTC 1 cut(s) 418
Eco57I CTGAAG 2 cut(s) 431, 585
Eco88I CYCGRG 1 cut(s) 331
EcoICRI GAGCTC 1 cut(s) 418
EcoRII CCWGG 1 cut(s) 454
EcoRV GATATC 1 cut(s) 473
EcoT14I CCWWGG 2 cut(s) 186, 659
EcoT22I ATGCAT 1 cut(s) 531
EcoT38I GRGCYC 1 cut(s) 420
ErhI CCWWGG 2 cut(s) 186, 659
Esp3I CGTCTC 2 cut(s) 151, 488
FaeI CATG 4 cut(s) 190, 479, 646, 740
FalI AAGNNNNNCTT 2 cut(s) 609, 641
FaqI GGGAC 1 cut(s) 559
FatI CATG 4 cut(s) 186, 475, 642, 736
FauI CCCGC 2 cut(s) 184, 376
Fnu4HI GCNGC 5 cut(s) 515, 592, 741, 858, 888
FokI GGATG 2 cut(s) 83, 623
FriOI GRGCYC 1 cut(s) 420
Fsp4HI GCNGC 5 cut(s) 515, 592, 741, 858, 888
FspBI CTAG 2 cut(s) 318, 660
FspI TGCGCA 1 cut(s) 779
GlaI GCGC 3 cut(s) 210, 275, 779
GluI GCNGC 5 cut(s) 515, 592, 741, 858, 888
GsaI CCCAGC 2 cut(s) 573, 690
GsuI CTGGAG 1 cut(s) 242
HaeIII GGCC 1 cut(s) 171
HapII CCGG 1 cut(s) 168
HgaI GACGC 2 cut(s) 505, 556
HhaI GCGC 3 cut(s) 211, 276, 780
Hin1II CATG 4 cut(s) 190, 479, 646, 740
Hin6I GCGC 3 cut(s) 209, 274, 778
HinP1I GCGC 3 cut(s) 209, 274, 778
HincII GTYRAC 1 cut(s) 673
HindII GTYRAC 1 cut(s) 673
HinfI GANTC 3 cut(s) 260, 308, 869
HpaI GTTAAC 1 cut(s) 673
HpaII CCGG 1 cut(s) 168
HphI GGTGA 5 cut(s) 172, 209, 341, 491, 724
Hpy166II GTNNAC 5 cut(s) 200, 312, 349, 673, 829
Hpy188I TCNGA 5 cut(s) 153, 493, 598, 749, 848
Hpy188III TCNNGA 2 cut(s) 264, 608
Hpy8I GTNNAC 5 cut(s) 200, 312, 349, 673, 829
HpyAV CCTTC 3 cut(s) 187, 406, 754
HpyCH4III ACNGT 2 cut(s) 23, 505
HpyCH4V TGCA 3 cut(s) 529, 559, 740
HpyF10VI GCNNNNNNNGC 4 cut(s) 217, 226, 415, 556
HpyF3I CTNAG 4 cut(s) 249, 492, 595, 809
Hsp92II CATG 4 cut(s) 190, 479, 646, 740
HspAI GCGC 3 cut(s) 209, 274, 778
KspAI GTTAAC 1 cut(s) 673
Kzo9I GATC 3 cut(s) 153, 303, 843
LmnI GCTCC 3 cut(s) 50, 146, 415
Lsp1109I GCAGC 3 cut(s) 501, 752, 869
MaeI CTAG 2 cut(s) 318, 660
MaeIII GTNAC 2 cut(s) 23, 679
MalI GATC 3 cut(s) 155, 305, 845
MbiI CCGCTC 3 cut(s) 141, 246, 591
MboI GATC 3 cut(s) 153, 303, 843
MboII GAAGA 7 cut(s) 22, 73, 269, 629, 752, 825, 833
MflI RGATCY 1 cut(s) 843
MhlI GDGCHC 1 cut(s) 420
MluCI AATT 5 cut(s) 162, 399, 438, 599, 785
MlyI GAGTC 2 cut(s) 269, 317
MmeI TCCRAC 1 cut(s) 772
Mph1103I ATGCAT 1 cut(s) 531
MroXI GAANNNNTTC 1 cut(s) 230
MseI TTAA 2 cut(s) 50, 672
MslI CAYNNNNRTG 1 cut(s) 185
MspA1I CMGCKG 1 cut(s) 686
MspI CCGG 1 cut(s) 168
MspR9I CCNGG 1 cut(s) 456
Mva1269I GAATGC 1 cut(s) 282
MvaI CCWGG 1 cut(s) 456
MvnI CGCG 3 cut(s) 209, 276, 358
MwoI GCNNNNNNNGC 4 cut(s) 217, 226, 415, 556
NcoI CCATGG 1 cut(s) 186
NdeII GATC 3 cut(s) 153, 303, 843
NlaIII CATG 4 cut(s) 190, 479, 646, 740
NmuCI GTSAC 1 cut(s) 679
NsbI TGCGCA 1 cut(s) 779
NsiI ATGCAT 1 cut(s) 531
NspV TTCGAA 2 cut(s) 16, 763
PaeR7I CTCGAG 1 cut(s) 331
PasI CCCWGGG 1 cut(s) 455
PctI GAATGC 1 cut(s) 282
PdmI GAANNNNTTC 1 cut(s) 230
PfeI GAWTC 1 cut(s) 869
PkrI GCNGC 5 cut(s) 516, 593, 742, 859, 889
Ple19I CGATCG 1 cut(s) 156
PleI GAGTC 2 cut(s) 268, 316
PpsI GAGTC 2 cut(s) 268, 316
Psp124BI GAGCTC 1 cut(s) 420
Psp6I CCWGG 1 cut(s) 454
PspFI CCCAGC 2 cut(s) 569, 686
PspGI CCWGG 1 cut(s) 454
PspXI VCTCGAGB 1 cut(s) 331
PsuI RGATCY 1 cut(s) 843
PvuI CGATCG 1 cut(s) 156
PvuII CAGCTG 1 cut(s) 686
RseI CAYNNNNRTG 1 cut(s) 185
SacI GAGCTC 1 cut(s) 420
SaqAI TTAA 2 cut(s) 50, 672
SatI GCNGC 5 cut(s) 515, 592, 741, 858, 888
Sau3AI GATC 3 cut(s) 153, 303, 843
SchI GAGTC 2 cut(s) 269, 317
ScrFI CCNGG 1 cut(s) 456
SduI GDGCHC 1 cut(s) 420
Sfr274I CTCGAG 1 cut(s) 331
SfuI TTCGAA 2 cut(s) 16, 763
SlaI CTCGAG 1 cut(s) 331
SmiMI CAYNNNNRTG 1 cut(s) 185
SmlI CTYRAG 1 cut(s) 331
SmoI CTYRAG 1 cut(s) 331
Sse9I AATT 5 cut(s) 162, 399, 438, 599, 785
SsiI CCGC 7 cut(s) 139, 191, 195, 244, 280, 369, 591
SspMI CTAG 2 cut(s) 318, 660
SstI GAGCTC 1 cut(s) 420
StyD4I CCNGG 1 cut(s) 454
StyI CCWWGG 2 cut(s) 186, 659
TaaI ACNGT 2 cut(s) 23, 505
TaqI TCGA 7 cut(s) 16, 234, 255, 286, 306, 332, 763
TasI AATT 5 cut(s) 162, 399, 438, 599, 785
TauI GCSGC 1 cut(s) 594
TfiI GAWTC 1 cut(s) 869
Tru1I TTAA 2 cut(s) 50, 672
Tru9I TTAA 2 cut(s) 50, 672
TscAI CASTG 3 cut(s) 222, 276, 568
TseFI GTSAC 1 cut(s) 679
TseI GCWGC 4 cut(s) 514, 740, 857, 887
Tsp45I GTSAC 1 cut(s) 679
TspDTI ATGAA 5 cut(s) 17, 631, 666, 731, 812
TspGWI ACGGA 3 cut(s) 105, 133, 862
TspRI CASTG 3 cut(s) 222, 276, 568
XapI RAATTY 3 cut(s) 162, 599, 785
XcmI CCANNNNNNNNNTGG 1 cut(s) 683
XhoI CTCGAG 1 cut(s) 331
XmaJI CCTAGG 1 cut(s) 659
XmnI GAANNNNTTC 1 cut(s) 230
XspI CTAG 2 cut(s) 318, 660
Zsp2I ATGCAT 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.