Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005043

Physical Location & Seq

Genomic Coordinates Forward (+)

23607084 .. 23609949

Gene Structure 2866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G234600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGAATATGAAATCAGCGTTTCGAAACGTTTATTGTACGCTCTTCCGCTCCCTAAACCCTAACCTTCCCTCCAATTTCCTCCCTCGTCGTCTTACATTCCTCATCCCTCCCTCAGCTCCGTCCATCAGAGCCCAAACGTTTCGCTCGCTCTCCCCCACTCACTCCTCTGAATCCATGCCGGGCGGTGAAGCTCACGCGGCTCCCCTGCTGGAGAAGCAGTTCGAGGACTTCCGAGCGCAGCTCGAAGAGTCTGGAACCTTGCGCGAGCGCATTCGAACTGTGGTTATGGAGATCGAGTCCACCACAAGGCTCATTCACTCGAGCCTTCTCTTAGTCCACCAGTCTCGTTCAACTCCTGAGGTTTTGGAGAAGCCCTTGGCTCAGATTGGTGTGCTGAAGGAGCTCTACAATCGACTCGCTAAGATTGTGCTCGAGTCTCCTGGGCAATACTATAGATATCATGGTGATTGGAAGACGGAGACACAGACTGTGGTTTCTCTGCTTGCTTTTATGCATTGGTTAGAGACAGGGGCTCTTTTGCTGCACACTGAAGCTAAGGAAAAACTTGGGTTGAACGATTCAGAGTTTGGTCTGGATGTTGAAGACTATCTTGTTGGTATTTGTTTCATGTCCAAGGAATTGCCGAGGTATGTGGTTAACCAAGTGACAGCTGGGGACTATGACTGCCCAAGAAAGGTGCTGAAATTTTTGACAGATCTTCATGCAGGCTTCCGCATGCTTAATCTTCGGAATGACTTTTTGCGCAAGACATTTGATGGTATGAAGTATGACCTAAGAAGAGTCGAAGAAGTTTACTACGATGTTAAGATCCGAGGCTTGACAGCCAATGGTGATCCTGTGGCAGACCAAGCAGCACAATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Translin

Protein Analysis

295

Amino Acids

33.59

Weight (kDa)

7.1

Isoelectric Point (pI)

51.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37020 AT2G37020 AT2G37020
fragaria_vesca	FvH4_6g16140 FvH4_6g16140 FvH4_6g16140 FvH4_6g16140
malus_domestica	MD12G1115500.v1.1
prunus_persica	Prupe.6G234600_v2.0.a1
pyrus_communis	pycom12g11490
rosa_chinensis	RchiOBHm_Chr1g0341651 RchiOBHm_Chr3g0469981 RchiOBHm_Chr4g0411411
rosa_laevigata	RLG00000024307
rosa_multiflora	Rmu_sc0004149.1_g000011 Rmu_sc0007963.1_g000002 Rmu_sc0020091.1_g000003 Rmu_ssc0000233.1_g000073
rosa_roxburghii	Rroxscaffold_1G00028150 Rroxscaffold_6G00411320
rosa_rugosa	Rorug03G0105900
rosa_samantha	Rh3AG154900 Rh3BG179000 Rh3CG169600 Rh3DG196200 Rh4AG014000 Rh4AG167700 Rh7AG386500 Rh7CG405800
rosa_wichuraiana	Rw3G014590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	764
AccBSI	CCGCTC	1 cut(s)	48
AccII	CGCG	2 cut(s)	197, 264
AciI	CCGC	4 cut(s)	46, 183, 197, 733
AclI	AACGTT	2 cut(s)	27, 137
AclWI	GGATC	2 cut(s)	823, 848
AcsI	RAATTY	1 cut(s)	704
AcuI	CTGAAG	2 cut(s)	416, 570
AfaI	GTAC	1 cut(s)	37
AfiI	CCNNNNNNNGG	2 cut(s)	306, 694
AgsI	TTSAA	3 cut(s)	351, 574, 602
AjnI	CCWGG	1 cut(s)	439
AloI	GAACNNNNNNTCC	2 cut(s)	203, 235
AluBI	AGCT	6 cut(s)	116, 191, 241, 403, 554, 671
AluI	AGCT	6 cut(s)	116, 191, 241, 403, 554, 671
Alw21I	GWGCWC	2 cut(s)	405, 432
Alw26I	GTCTC	4 cut(s)	348, 441, 473, 518
AlwI	GGATC	2 cut(s)	823, 848
Ama87I	CYCGRG	2 cut(s)	319, 431
ApeKI	GCWGC	3 cut(s)	238, 541, 872
ApoI	RAATTY	1 cut(s)	704
Asp700I	GAANNNNTTC	1 cut(s)	218
AspLEI	GCGC	4 cut(s)	238, 264, 270, 765
AsuC2I	CCSGG	1 cut(s)	180
AsuHPI	GGTGA	3 cut(s)	197, 476, 863
AsuII	TTCGAA	2 cut(s)	22, 274
AvaI	CYCGRG	2 cut(s)	319, 431
AxyI	CCTNAGG	1 cut(s)	357
BanII	GRGCYC	3 cut(s)	133, 405, 535
BarI	GAAGNNNNNNTAC	2 cut(s)	389, 421
BbsI	GAAGAC	2 cut(s)	479, 609
Bbv12I	GWGCWC	2 cut(s)	405, 432
BbvCI	CCTCAGC	1 cut(s)	112
BbvI	GCAGC	2 cut(s)	250, 528
BccI	CCATC	2 cut(s)	131, 770
BciT130I	CCWGG	1 cut(s)	441
BcnI	CCSGG	1 cut(s)	180
BcoDI	GTCTC	4 cut(s)	348, 441, 473, 518
BfmI	CTRYAG	1 cut(s)	451
BglII	AGATCT	1 cut(s)	715
BisI	GCNGC	4 cut(s)	198, 239, 542, 873
BlsI	GCNGC	4 cut(s)	199, 240, 543, 874
Bme1390I	CCNGG	2 cut(s)	180, 441
BmeT110I	CYCGRG	2 cut(s)	319, 431
BmiI	GGNNCC	2 cut(s)	201, 256
BmrFI	CCNGG	2 cut(s)	180, 441
BpiI	GAAGAC	2 cut(s)	479, 609
BplI	GAGNNNNNCTC	2 cut(s)	225, 257
BpmI	CTGGAG	1 cut(s)	230
Bpu10I	CCTNAGC	2 cut(s)	112, 555
Bpu14I	TTCGAA	2 cut(s)	22, 274
BpuMI	CCSGG	1 cut(s)	180
BsaJI	CCNNGG	5 cut(s)	375, 440, 633, 644, 832
BsaXI	ACNNNNNCTCC	6 cut(s)	53, 83, 203, 233, 281, 311
Bsc4I	CCNNNNNNNGG	2 cut(s)	306, 694
Bse1I	ACTGG	1 cut(s)	340
Bse21I	CCTNAGG	1 cut(s)	357
BseBI	CCWGG	1 cut(s)	441
BseDI	CCNNGG	5 cut(s)	375, 440, 633, 644, 832
BseGI	GGATG	2 cut(s)	102, 601
BseLI	CCNNNNNNNGG	2 cut(s)	306, 694
BseMII	CTCAG	3 cut(s)	126, 348, 395
BseNI	ACTGG	1 cut(s)	340
BseRI	GAGGAG	1 cut(s)	154
BseXI	GCAGC	2 cut(s)	250, 528
BseYI	CCCAGC	1 cut(s)	671
BsgI	GTGCAG	1 cut(s)	527
Bsh1236I	CGCG	2 cut(s)	197, 264
BsiHKAI	GWGCWC	2 cut(s)	405, 432
BsiHKCI	CYCGRG	2 cut(s)	319, 431
BsiSI	CCGG	1 cut(s)	179
BslFI	GGGAC	1 cut(s)	689
BslI	CCNNNNNNNGG	2 cut(s)	306, 694
BsmAI	GTCTC	4 cut(s)	348, 441, 473, 518
BsmFI	GGGAC	1 cut(s)	689
BsmI	GAATGC	1 cut(s)	270
BsoBI	CYCGRG	2 cut(s)	319, 431
Bsp119I	TTCGAA	2 cut(s)	22, 274
Bsp1286I	GDGCHC	4 cut(s)	133, 405, 432, 535
Bsp143I	GATC	4 cut(s)	291, 715, 828, 853
BspACI	CCGC	4 cut(s)	46, 183, 197, 733
BspCNI	CTCAG	3 cut(s)	125, 349, 394
BspFNI	CGCG	2 cut(s)	197, 264
BspLI	GGNNCC	2 cut(s)	201, 256
BspPI	GGATC	2 cut(s)	823, 848
BspQI	GCTCTTC	1 cut(s)	47
BspT104I	TTCGAA	2 cut(s)	22, 274
BsrBI	CCGCTC	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	340
BssECI	CCNNGG	5 cut(s)	375, 440, 633, 644, 832
BssMI	GATC	4 cut(s)	291, 715, 828, 853
BssT1I	CCWWGG	2 cut(s)	375, 633
Bst2UI	CCWGG	1 cut(s)	441
Bst4CI	ACNGT	2 cut(s)	280, 490
Bst6I	CTCTTC	3 cut(s)	47, 240, 793
BstBI	TTCGAA	2 cut(s)	22, 274
BstC8I	GCNNGC	5 cut(s)	146, 266, 504, 727, 737
BstDEI	CTNAG	7 cut(s)	112, 331, 357, 381, 420, 555, 794
BstF5I	GGATG	2 cut(s)	102, 601
BstFNI	CGCG	2 cut(s)	197, 264
BstHHI	GCGC	4 cut(s)	238, 264, 270, 765
BstKTI	GATC	4 cut(s)	294, 718, 831, 856
BstMAI	GTCTC	4 cut(s)	348, 441, 473, 518
BstMBI	GATC	4 cut(s)	291, 715, 828, 853
BstMWI	GCNNNNNNNGC	4 cut(s)	197, 214, 400, 869
BstNI	CCWGG	1 cut(s)	441
BstNSI	RCATGY	1 cut(s)	739
BstSCI	CCNGG	2 cut(s)	178, 439
BstSFI	CTRYAG	1 cut(s)	451
BstUI	CGCG	2 cut(s)	197, 264
BstV1I	GCAGC	2 cut(s)	250, 528
BstV2I	GAAGAC	2 cut(s)	479, 609
BstX2I	RGATCY	2 cut(s)	715, 828
BstYI	RGATCY	2 cut(s)	715, 828
Bsu36I	CCTNAGG	1 cut(s)	357
BtsCI	GGATG	2 cut(s)	102, 601
BtsIMutI	CAGTG	1 cut(s)	546
Cac8I	GCNNGC	5 cut(s)	146, 266, 504, 727, 737
CfoI	GCGC	4 cut(s)	238, 264, 270, 765
Csp6I	GTAC	1 cut(s)	36
CviAII	CATG	5 cut(s)	175, 461, 628, 722, 736
CviQI	GTAC	1 cut(s)	36
DdeI	CTNAG	7 cut(s)	112, 331, 357, 381, 420, 555, 794
DpnI	GATC	4 cut(s)	293, 717, 830, 855
DpnII	GATC	4 cut(s)	291, 715, 828, 853
Eam1104I	CTCTTC	3 cut(s)	47, 240, 793
EarI	CTCTTC	3 cut(s)	47, 240, 793
Ecl136II	GAGCTC	1 cut(s)	403
Eco130I	CCWWGG	2 cut(s)	375, 633
Eco24I	GRGCYC	3 cut(s)	133, 405, 535
Eco32I	GATATC	1 cut(s)	458
Eco53kI	GAGCTC	1 cut(s)	403
Eco57I	CTGAAG	2 cut(s)	416, 570
Eco81I	CCTNAGG	1 cut(s)	357
Eco88I	CYCGRG	2 cut(s)	319, 431
EcoICRI	GAGCTC	1 cut(s)	403
EcoRII	CCWGG	1 cut(s)	439
EcoRV	GATATC	1 cut(s)	458
EcoT14I	CCWWGG	2 cut(s)	375, 633
EcoT22I	ATGCAT	1 cut(s)	516
EcoT38I	GRGCYC	3 cut(s)	133, 405, 535
ErhI	CCWWGG	2 cut(s)	375, 633
FaeI	CATG	5 cut(s)	178, 464, 631, 725, 739
FalI	AAGNNNNNCTT	2 cut(s)	594, 626
FaqI	GGGAC	1 cut(s)	689
FatI	CATG	5 cut(s)	174, 460, 627, 721, 735
Fnu4HI	GCNGC	4 cut(s)	198, 239, 542, 873
FokI	GGATG	2 cut(s)	89, 608
FriOI	GRGCYC	3 cut(s)	133, 405, 535
Fsp4HI	GCNGC	4 cut(s)	198, 239, 542, 873
FspI	TGCGCA	1 cut(s)	764
GlaI	GCGC	4 cut(s)	237, 263, 269, 764
GluI	GCNGC	4 cut(s)	198, 239, 542, 873
GsaI	CCCAGC	1 cut(s)	675
GsuI	CTGGAG	1 cut(s)	230
HapII	CCGG	1 cut(s)	179
HhaI	GCGC	4 cut(s)	238, 264, 270, 765
Hin1II	CATG	5 cut(s)	178, 464, 631, 725, 739
Hin6I	GCGC	4 cut(s)	236, 262, 268, 763
HinP1I	GCGC	4 cut(s)	236, 262, 268, 763
HincII	GTYRAC	1 cut(s)	658
HindII	GTYRAC	1 cut(s)	658
HinfI	GANTC	7 cut(s)	170, 248, 296, 414, 434, 578, 801
HpaI	GTTAAC	1 cut(s)	658
HpaII	CCGG	1 cut(s)	179
HphI	GGTGA	3 cut(s)	197, 476, 863
Hpy166II	GTNNAC	4 cut(s)	300, 337, 658, 814
Hpy188I	TCNGA	7 cut(s)	128, 169, 233, 384, 583, 750, 833
Hpy188III	TCNNGA	3 cut(s)	252, 356, 593
Hpy8I	GTNNAC	4 cut(s)	300, 337, 658, 814
Hpy99I	CGWCG	1 cut(s)	90
HpyAV	CCTTC	3 cut(s)	74, 335, 391
HpyCH4III	ACNGT	2 cut(s)	280, 490
HpyCH4IV	ACGT	2 cut(s)	27, 137
HpyCH4V	TGCA	3 cut(s)	514, 544, 725
HpyF10VI	GCNNNNNNNGC	4 cut(s)	197, 214, 400, 869
HpyF3I	CTNAG	7 cut(s)	112, 331, 357, 381, 420, 555, 794
HpySE526I	ACGT	2 cut(s)	27, 137
Hsp92II	CATG	5 cut(s)	178, 464, 631, 725, 739
HspAI	GCGC	4 cut(s)	236, 262, 268, 763
KspAI	GTTAAC	1 cut(s)	658
Kzo9I	GATC	4 cut(s)	291, 715, 828, 853
LguI	GCTCTTC	1 cut(s)	47
LmnI	GCTCC	4 cut(s)	53, 121, 205, 400
Lsp1109I	GCAGC	2 cut(s)	250, 528
MaeII	ACGT	2 cut(s)	27, 137
MaeIII	GTNAC	1 cut(s)	664
MalI	GATC	4 cut(s)	293, 717, 830, 855
MbiI	CCGCTC	1 cut(s)	48
MboI	GATC	4 cut(s)	291, 715, 828, 853
MboII	GAAGA	8 cut(s)	34, 257, 484, 614, 710, 737, 810, 818
MflI	RGATCY	2 cut(s)	715, 828
MhlI	GDGCHC	4 cut(s)	133, 405, 432, 535
MluCI	AATT	3 cut(s)	73, 638, 704
MlyI	GAGTC	5 cut(s)	257, 305, 408, 443, 810
Mph1103I	ATGCAT	1 cut(s)	516
MroXI	GAANNNNTTC	1 cut(s)	218
MseI	TTAA	3 cut(s)	657, 741, 825
MspA1I	CMGCKG	1 cut(s)	671
MspI	CCGG	1 cut(s)	179
MspR9I	CCNGG	2 cut(s)	180, 441
Mva1269I	GAATGC	1 cut(s)	270
MvaI	CCWGG	1 cut(s)	441
MvnI	CGCG	2 cut(s)	197, 264
MwoI	GCNNNNNNNGC	4 cut(s)	197, 214, 400, 869
NciI	CCSGG	1 cut(s)	180
NdeII	GATC	4 cut(s)	291, 715, 828, 853
NlaIII	CATG	5 cut(s)	178, 464, 631, 725, 739
NlaIV	GGNNCC	2 cut(s)	201, 256
NmeAIII	GCCGAG	1 cut(s)	669
NmuCI	GTSAC	1 cut(s)	664
NsbI	TGCGCA	1 cut(s)	764
NsiI	ATGCAT	1 cut(s)	516
NspI	RCATGY	1 cut(s)	739
NspV	TTCGAA	2 cut(s)	22, 274
PaeI	GCATGC	1 cut(s)	739
PaeR7I	CTCGAG	2 cut(s)	319, 431
PciSI	GCTCTTC	1 cut(s)	47
PctI	GAATGC	1 cut(s)	270
PdmI	GAANNNNTTC	1 cut(s)	218
PfeI	GAWTC	2 cut(s)	170, 578
PkrI	GCNGC	4 cut(s)	199, 240, 543, 874
PleI	GAGTC	5 cut(s)	256, 304, 408, 442, 809
PpsI	GAGTC	5 cut(s)	256, 304, 408, 442, 809
Psp124BI	GAGCTC	1 cut(s)	405
Psp1406I	AACGTT	2 cut(s)	27, 137
Psp6I	CCWGG	1 cut(s)	439
PspFI	CCCAGC	1 cut(s)	671
PspGI	CCWGG	1 cut(s)	439
PspN4I	GGNNCC	2 cut(s)	201, 256
PspXI	VCTCGAGB	2 cut(s)	319, 431
PsuI	RGATCY	2 cut(s)	715, 828
PvuII	CAGCTG	1 cut(s)	671
RsaI	GTAC	1 cut(s)	37
RsaNI	GTAC	1 cut(s)	36
SacI	GAGCTC	1 cut(s)	405
SapI	GCTCTTC	1 cut(s)	47
SaqAI	TTAA	3 cut(s)	657, 741, 825
SatI	GCNGC	4 cut(s)	198, 239, 542, 873
Sau3AI	GATC	4 cut(s)	291, 715, 828, 853
SchI	GAGTC	5 cut(s)	257, 305, 408, 443, 810
ScrFI	CCNGG	2 cut(s)	180, 441
SduI	GDGCHC	4 cut(s)	133, 405, 432, 535
SfcI	CTRYAG	1 cut(s)	451
Sfr274I	CTCGAG	2 cut(s)	319, 431
SfuI	TTCGAA	2 cut(s)	22, 274
SlaI	CTCGAG	2 cut(s)	319, 431
SmlI	CTYRAG	2 cut(s)	319, 431
SmoI	CTYRAG	2 cut(s)	319, 431
SphI	GCATGC	1 cut(s)	739
Sse9I	AATT	3 cut(s)	73, 638, 704
SsiI	CCGC	4 cut(s)	46, 183, 197, 733
SstI	GAGCTC	1 cut(s)	405
StyD4I	CCNGG	2 cut(s)	178, 439
StyI	CCWWGG	2 cut(s)	375, 633
TaaI	ACNGT	2 cut(s)	280, 490
TaiI	ACGT	2 cut(s)	30, 140
TaqI	TCGA	9 cut(s)	22, 222, 243, 274, 294, 320, 412, 432, 804
TasI	AATT	3 cut(s)	73, 638, 704
TauI	GCSGC	1 cut(s)	200
TfiI	GAWTC	2 cut(s)	170, 578
Tru1I	TTAA	3 cut(s)	657, 741, 825
Tru9I	TTAA	3 cut(s)	657, 741, 825
TscAI	CASTG	1 cut(s)	553
TseFI	GTSAC	1 cut(s)	664
TseI	GCWGC	3 cut(s)	238, 541, 872
Tsp45I	GTSAC	1 cut(s)	664
TspDTI	ATGAA	5 cut(s)	17, 23, 616, 710, 797
TspGWI	ACGGA	2 cut(s)	108, 491
TspRI	CASTG	1 cut(s)	553
XapI	RAATTY	1 cut(s)	704
XceI	RCATGY	1 cut(s)	739
XcmI	CCANNNNNNNNNTGG	1 cut(s)	668
XhoI	CTCGAG	2 cut(s)	319, 431
XmnI	GAANNNNTTC	1 cut(s)	218
Zsp2I	ATGCAT	1 cut(s)	516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.