Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003370

Physical Location & Seq

Genomic Coordinates Forward (+)

16011233 .. 16012515

Gene Structure 1283 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G38230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCAGGAACCGGAGTTGTGGCGGTGTACGGCGAAGGAGCCATGACGGAGACGAAACAGAAATCTCCCTTCTCCGTGAAAGTTGGTCTCGCTCAGATGCTTCGTGGCGGTGTAATCATGGATGTCGTCAACGCAGAGCAAGCTCGAATCGCTGAAGAAGCTGGCGCATGCGCCGTGATGGCTCTTGAACGTGTTCCCGCCGATATTCGAGCTCAAGGCGGTGTTGCTCGAATGAGCGATCCAGAGATGATCAAAGAAATCAAAAACGCCGTGACGATTCCGGTGATGGCGAAAGCTAGAATTGGTCATTTCGTTGAAGCTCAGATCCTGGAAGCAATCGGAGTTGATTACGTCGACGAGAGTGAAGTTCTCACTCTCGCCGACGAAGATAATCACATCAACAAACATAATTTCAAAATCCCTTTTGTTTGTGGATGTAGGAATCTCGGTGAAGCTTTAAGGCGGATCCGTGAAGGAGCCGCCATGATAAGAACCAAAGGTGAGGCTGGAACTGGTAACGTTGTTGAAGCCGTTAGGCACGTGAGGAGTGTGAACGGAGCTATTCGGTTACTTAGAAGCATGGACGATGACGAGGTTTTCACTTACGCGAAAAAGATCGCTGCGCCGTATGATTTGGTTGTGCAGACTAAGGAGCTTGGGAGGTTACCGGTGGTTCAGTTCGCTGCTGGAGGAGTGGCGACGCCGGCGGATGCGGCGTTGATGATGCAGTTGGGATGTGATGGAGTGTTTGTTGGGTCGGGTGTTTTCAAGAGTGGAGATCCGGTGAAGAGGGCTAAGGCTATTGTTCAGGCGGTTACGAATTATAGAGACGCGGCGGTGTTGGCGGAGGTGAGCTGTGGTTTAGGTGAAGCCATGGTTGGTCTTAATTTGGATGATAAGGTTGAGAGGTTCGCTAGTCGTTCTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0009507 GO:0009536 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046982 GO:0046983 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00750 map00750

Pfam Domains

Protein Families

SOR_SNZ

Protein Analysis

309

Amino Acids

32.86

Weight (kDa)

5.75

Isoelectric Point (pI)

32.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SOR_SNZ	PF01680	24 - 229	1.4e-112	SOR/SNZ family
ThiG	PF05690	209 - 279	1.2e-08	Thiazole biosynthesis protein ThiG

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38230 AT5G01410 AT5G01410
fragaria_vesca	FvH4_3g38650 FvH4_6g11420
malus_domestica	MD04G1153300.v1.1 MD11G1073500.v1.1
prunus_persica	Prupe.6G277500_v2.0.a1 Prupe.8G053100_v2.0.a1
pyrus_communis	pycom04g13870 pycom11g06100 pycom12g15860
rosa_chinensis	RchiOBHm_Chr1g0327251 RchiOBHm_Chr3g0463101 RchiOBHm_Chr5g0069681
rosa_laevigata	RLG00000024812 RLG00000036085
rosa_multiflora	Rmu_sc0000738.1_g000036 Rmu_sc0000766.1_g000039 Rmu_sc0001791.1_g000010 Rmu_sc0007688.1_g000003
rosa_roxburghii	Rroxscaffold_1G00011400 Rroxscaffold_6G00416960
rosa_rugosa	Rorug03G0061400 Rorug05G0399200
rosa_samantha	Rh2CG209300 Rh3AG119600 Rh3BG124100 Rh3CG126000 Rh3DG125100 Rh5BG265000 Rh5BG475000 Rh5CG498600 Rh5DG486500
rosa_wichuraiana	Rw3G010120 Rw5G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	354
AccII	CGCG	2 cut(s)	608, 833
AclI	AACGTT	1 cut(s)	519
AclWI	GGATC	5 cut(s)	233, 319, 460, 473, 773
AcuI	CTGAAG	1 cut(s)	174
AcvI	CACGTG	1 cut(s)	541
AcyI	GRCGYC	1 cut(s)	701
AfaI	GTAC	1 cut(s)	29
AflIII	ACRYGT	1 cut(s)	190
AgeI	ACCGGT	1 cut(s)	667
AgsI	TTSAA	5 cut(s)	188, 317, 415, 527, 769
AjnI	CCWGG	1 cut(s)	327
AjuI	GAANNNNNNNTTGG	2 cut(s)	861, 893
AluBI	AGCT	9 cut(s)	143, 161, 212, 296, 320, 455, 560, 655, 855
AluI	AGCT	9 cut(s)	143, 161, 212, 296, 320, 455, 560, 655, 855
Alw21I	GWGCWC	1 cut(s)	214
Alw26I	GTCTC	3 cut(s)	44, 92, 822
AlwI	GGATC	5 cut(s)	233, 319, 460, 473, 773
AlwNI	CAGNNNCTG	1 cut(s)	328
ApeKI	GCWGC	2 cut(s)	620, 683
AsiGI	ACCGGT	1 cut(s)	667
Asp700I	GAANNNNTTC	1 cut(s)	192
AspLEI	GCGC	3 cut(s)	167, 173, 625
AsuHPI	GGTGA	6 cut(s)	295, 461, 512, 796, 862, 878
BamHI	GGATCC	1 cut(s)	465
BanII	GRGCYC	1 cut(s)	214
BbrPI	CACGTG	1 cut(s)	541
Bbv12I	GWGCWC	1 cut(s)	214
BbvI	GCAGC	2 cut(s)	607, 670
BccI	CCATC	3 cut(s)	172, 280, 734
BceAI	ACGGC	5 cut(s)	46, 158, 254, 515, 610
BciT130I	CCWGG	1 cut(s)	329
BclI	TGATCA	1 cut(s)	249
BcoDI	GTCTC	3 cut(s)	44, 92, 822
BfaI	CTAG	2 cut(s)	297, 915
BglI	GCCNNNNNGGC	1 cut(s)	179
BisI	GCNGC	5 cut(s)	480, 621, 684, 714, 834
BlsI	GCNGC	5 cut(s)	481, 622, 685, 715, 835
Bme1390I	CCNGG	1 cut(s)	329
BmiI	GGNNCC	4 cut(s)	10, 40, 467, 478
BmrFI	CCNGG	1 cut(s)	329
BmsI	GCATC	3 cut(s)	87, 700, 714
BpmI	CTGGAG	1 cut(s)	708
Bpu10I	CCTNAGC	1 cut(s)	795
BpuEI	CTTGAG	1 cut(s)	198
BsaAI	YACGTR	1 cut(s)	541
BsaHI	GRCGYC	1 cut(s)	701
BsaI	GGTCTC	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	873
BsaWI	WCCGGW	4 cut(s)	11, 280, 667, 781
BsaXI	ACNNNNNCTCC	4 cut(s)	735, 765, 768, 798
Bse118I	RCCGGY	2 cut(s)	667, 703
Bse1I	ACTGG	1 cut(s)	517
BseBI	CCWGG	1 cut(s)	329
BseDI	CCNNGG	1 cut(s)	873
BseGI	GGATG	5 cut(s)	127, 440, 715, 740, 898
BseMII	CTCAG	3 cut(s)	107, 335, 915
BseNI	ACTGG	1 cut(s)	517
BseRI	GAGGAG	2 cut(s)	559, 705
BseXI	GCAGC	2 cut(s)	607, 670
BsgI	GTGCAG	1 cut(s)	662
Bsh1236I	CGCG	2 cut(s)	608, 833
BshTI	ACCGGT	1 cut(s)	667
BsiHKAI	GWGCWC	1 cut(s)	214
BsiSI	CCGG	5 cut(s)	12, 281, 668, 704, 782
BsmAI	GTCTC	3 cut(s)	44, 92, 822
BsmBI	CGTCTC	2 cut(s)	44, 822
Bso31I	GGTCTC	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	214
Bsp143I	GATC	6 cut(s)	238, 249, 324, 465, 615, 778
Bsp19I	CCATGG	1 cut(s)	873
BspCNI	CTCAG	3 cut(s)	106, 334, 916
BspFNI	CGCG	2 cut(s)	608, 833
BspLI	GGNNCC	4 cut(s)	10, 40, 467, 478
BspPI	GGATC	5 cut(s)	233, 319, 460, 473, 773
BspTNI	GGTCTC	1 cut(s)	92
BsrFI	RCCGGY	2 cut(s)	667, 703
BsrI	ACTGG	1 cut(s)	517
BssAI	RCCGGY	2 cut(s)	667, 703
BssECI	CCNNGG	1 cut(s)	873
BssMI	GATC	6 cut(s)	238, 249, 324, 465, 615, 778
BssNI	GRCGYC	1 cut(s)	701
BssT1I	CCWWGG	1 cut(s)	873
Bst2UI	CCWGG	1 cut(s)	329
Bst6I	CTCTTC	1 cut(s)	782
BstACI	GRCGYC	1 cut(s)	701
BstBAI	YACGTR	1 cut(s)	541
BstC8I	GCNNGC	4 cut(s)	141, 163, 169, 705
BstDEI	CTNAG	6 cut(s)	93, 321, 572, 648, 795, 924
BstDSI	CCRYGG	1 cut(s)	873
BstEII	GGTNACC	1 cut(s)	663
BstF5I	GGATG	5 cut(s)	127, 440, 715, 740, 898
BstFNI	CGCG	2 cut(s)	608, 833
BstHHI	GCGC	3 cut(s)	167, 173, 625
BstKTI	GATC	6 cut(s)	241, 252, 327, 468, 618, 781
BstMAI	GTCTC	3 cut(s)	44, 92, 822
BstMBI	GATC	6 cut(s)	238, 249, 324, 465, 615, 778
BstMWI	GCNNNNNNNGC	7 cut(s)	140, 149, 158, 179, 704, 713, 842
BstNI	CCWGG	1 cut(s)	329
BstNSI	RCATGY	1 cut(s)	171
BstPI	GGTNACC	1 cut(s)	663
BstSCI	CCNGG	1 cut(s)	327
BstUI	CGCG	2 cut(s)	608, 833
BstV1I	GCAGC	2 cut(s)	607, 670
BstX2I	RGATCY	3 cut(s)	324, 465, 778
BstYI	RGATCY	3 cut(s)	324, 465, 778
BtgI	CCRYGG	1 cut(s)	873
BtsCI	GGATG	5 cut(s)	127, 440, 715, 740, 898
Cac8I	GCNNGC	4 cut(s)	141, 163, 169, 705
CaiI	CAGNNNCTG	1 cut(s)	328
CfoI	GCGC	3 cut(s)	167, 173, 625
Cfr10I	RCCGGY	2 cut(s)	667, 703
CseI	GACGC	2 cut(s)	709, 839
Csp6I	GTAC	1 cut(s)	28
CspAI	ACCGGT	1 cut(s)	667
CviAII	CATG	6 cut(s)	43, 118, 168, 484, 580, 874
CviQI	GTAC	1 cut(s)	28
DdeI	CTNAG	6 cut(s)	93, 321, 572, 648, 795, 924
DpnI	GATC	6 cut(s)	240, 251, 326, 467, 617, 780
DpnII	GATC	6 cut(s)	238, 249, 324, 465, 615, 778
Eam1104I	CTCTTC	1 cut(s)	782
EarI	CTCTTC	1 cut(s)	782
EciI	GGCGGA	3 cut(s)	478, 722, 860
Ecl136II	GAGCTC	1 cut(s)	212
Eco130I	CCWWGG	1 cut(s)	873
Eco24I	GRGCYC	1 cut(s)	214
Eco31I	GGTCTC	1 cut(s)	92
Eco53kI	GAGCTC	1 cut(s)	212
Eco57I	CTGAAG	1 cut(s)	174
Eco72I	CACGTG	1 cut(s)	541
Eco91I	GGTNACC	1 cut(s)	663
EcoICRI	GAGCTC	1 cut(s)	212
EcoO65I	GGTNACC	1 cut(s)	663
EcoRII	CCWGG	1 cut(s)	327
EcoT14I	CCWWGG	1 cut(s)	873
EcoT38I	GRGCYC	1 cut(s)	214
ErhI	CCWWGG	1 cut(s)	873
Esp3I	CGTCTC	2 cut(s)	44, 822
FaeI	CATG	6 cut(s)	46, 121, 171, 487, 583, 877
FaiI	YATR	9 cut(s)	44, 119, 169, 408, 485, 581, 630, 825, 875
FatI	CATG	6 cut(s)	42, 117, 167, 483, 579, 873
FauI	CCCGC	1 cut(s)	205
FbaI	TGATCA	1 cut(s)	249
FblI	GTMKAC	1 cut(s)	354
Fnu4HI	GCNGC	5 cut(s)	480, 621, 684, 714, 834
FokI	GGATG	5 cut(s)	134, 447, 722, 747, 905
FriOI	GRGCYC	1 cut(s)	214
Fsp4HI	GCNGC	5 cut(s)	480, 621, 684, 714, 834
FspBI	CTAG	2 cut(s)	297, 915
GlaI	GCGC	3 cut(s)	166, 172, 624
GluI	GCNGC	5 cut(s)	480, 621, 684, 714, 834
GsuI	CTGGAG	1 cut(s)	708
HapII	CCGG	5 cut(s)	12, 281, 668, 704, 782
HgaI	GACGC	2 cut(s)	709, 839
HhaI	GCGC	3 cut(s)	167, 173, 625
Hin1I	GRCGYC	1 cut(s)	701
Hin1II	CATG	6 cut(s)	46, 121, 171, 487, 583, 877
Hin6I	GCGC	3 cut(s)	165, 171, 623
HinP1I	GCGC	3 cut(s)	165, 171, 623
HincII	GTYRAC	2 cut(s)	130, 355
HindII	GTYRAC	2 cut(s)	130, 355
HindIII	AAGCTT	1 cut(s)	453
HinfI	GANTC	3 cut(s)	147, 277, 442
HpaII	CCGG	5 cut(s)	12, 281, 668, 704, 782
HphI	GGTGA	6 cut(s)	295, 461, 512, 796, 862, 878
Hpy166II	GTNNAC	4 cut(s)	28, 130, 355, 553
Hpy188I	TCNGA	4 cut(s)	96, 324, 341, 925
Hpy188III	TCNNGA	3 cut(s)	185, 242, 769
Hpy8I	GTNNAC	4 cut(s)	28, 130, 355, 553
Hpy99I	CGWCG	4 cut(s)	356, 359, 386, 703
HpyAV	CCTTC	3 cut(s)	29, 79, 467
HpyCH4IV	ACGT	4 cut(s)	190, 351, 519, 540
HpyCH4V	TGCA	2 cut(s)	643, 727
HpyF10VI	GCNNNNNNNGC	7 cut(s)	140, 149, 158, 179, 704, 713, 842
HpyF3I	CTNAG	6 cut(s)	93, 321, 572, 648, 795, 924
HpySE526I	ACGT	4 cut(s)	190, 351, 519, 540
Hsp92I	GRCGYC	1 cut(s)	701
Hsp92II	CATG	6 cut(s)	46, 121, 171, 487, 583, 877
HspAI	GCGC	3 cut(s)	165, 171, 623
KroI	GCCGGC	1 cut(s)	703
KroNI	GCCGGC	1 cut(s)	705
Ksp22I	TGATCA	1 cut(s)	249
Kzo9I	GATC	6 cut(s)	238, 249, 324, 465, 615, 778
LmnI	GCTCC	4 cut(s)	38, 476, 557, 652
Lsp1109I	GCAGC	2 cut(s)	607, 670
LweI	GCATC	3 cut(s)	87, 700, 714
MaeI	CTAG	2 cut(s)	297, 915
MaeII	ACGT	4 cut(s)	190, 351, 519, 540
MaeIII	GTNAC	5 cut(s)	271, 515, 567, 663, 814
MalI	GATC	6 cut(s)	240, 251, 326, 467, 617, 780
MboI	GATC	6 cut(s)	238, 249, 324, 465, 615, 778
MboII	GAAGA	3 cut(s)	167, 398, 799
MflI	RGATCY	3 cut(s)	324, 465, 778
MhlI	GDGCHC	1 cut(s)	214
MluCI	AATT	4 cut(s)	300, 409, 820, 886
MnlI	CCTC	8 cut(s)	496, 537, 586, 654, 683, 783, 841, 900
MreI	CGCCGGCG	1 cut(s)	703
MroNI	GCCGGC	1 cut(s)	703
MroXI	GAANNNNTTC	1 cut(s)	192
MseI	TTAA	2 cut(s)	458, 885
MspI	CCGG	5 cut(s)	12, 281, 668, 704, 782
MspR9I	CCNGG	1 cut(s)	329
MvaI	CCWGG	1 cut(s)	329
MvnI	CGCG	2 cut(s)	608, 833
MwoI	GCNNNNNNNGC	7 cut(s)	140, 149, 158, 179, 704, 713, 842
NaeI	GCCGGC	1 cut(s)	705
NcoI	CCATGG	1 cut(s)	873
NdeII	GATC	6 cut(s)	238, 249, 324, 465, 615, 778
NgoMIV	GCCGGC	1 cut(s)	703
NlaIII	CATG	6 cut(s)	46, 121, 171, 487, 583, 877
NlaIV	GGNNCC	4 cut(s)	10, 40, 467, 478
NmuCI	GTSAC	1 cut(s)	271
NspI	RCATGY	1 cut(s)	171
PaeI	GCATGC	1 cut(s)	171
PdiI	GCCGGC	1 cut(s)	705
PdmI	GAANNNNTTC	1 cut(s)	192
PfeI	GAWTC	3 cut(s)	147, 277, 442
PfoI	TCCNGGA	1 cut(s)	327
PinAI	ACCGGT	1 cut(s)	667
PkrI	GCNGC	5 cut(s)	481, 622, 685, 715, 835
PmaCI	CACGTG	1 cut(s)	541
PmlI	CACGTG	1 cut(s)	541
Ppu21I	YACGTR	1 cut(s)	541
Psp124BI	GAGCTC	1 cut(s)	214
Psp1406I	AACGTT	1 cut(s)	519
Psp6I	CCWGG	1 cut(s)	327
PspCI	CACGTG	1 cut(s)	541
PspEI	GGTNACC	1 cut(s)	663
PspGI	CCWGG	1 cut(s)	327
PspN4I	GGNNCC	4 cut(s)	10, 40, 467, 478
PstNI	CAGNNNCTG	1 cut(s)	328
PsuI	RGATCY	3 cut(s)	324, 465, 778
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
SacI	GAGCTC	1 cut(s)	214
SalI	GTCGAC	1 cut(s)	353
SaqAI	TTAA	2 cut(s)	458, 885
SatI	GCNGC	5 cut(s)	480, 621, 684, 714, 834
Sau3AI	GATC	6 cut(s)	238, 249, 324, 465, 615, 778
ScrFI	CCNGG	1 cut(s)	329
SduI	GDGCHC	1 cut(s)	214
SfaNI	GCATC	3 cut(s)	87, 700, 714
SgrAI	CRCCGGYG	1 cut(s)	703
SgrDI	CGTCGACG	1 cut(s)	353
SmlI	CTYRAG	1 cut(s)	213
SmoI	CTYRAG	1 cut(s)	213
SphI	GCATGC	1 cut(s)	171
Sse9I	AATT	4 cut(s)	300, 409, 820, 886
SspMI	CTAG	2 cut(s)	297, 915
SstI	GAGCTC	1 cut(s)	214
StyD4I	CCNGG	1 cut(s)	327
StyI	CCWWGG	1 cut(s)	873
TaiI	ACGT	4 cut(s)	193, 354, 522, 543
TaqI	TCGA	4 cut(s)	145, 208, 229, 354
TasI	AATT	4 cut(s)	300, 409, 820, 886
TauI	GCSGC	3 cut(s)	482, 716, 836
TfiI	GAWTC	3 cut(s)	147, 277, 442
Tru1I	TTAA	2 cut(s)	458, 885
Tru9I	TTAA	2 cut(s)	458, 885
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	2 cut(s)	620, 683
Tsp45I	GTSAC	1 cut(s)	271
TspGWI	ACGGA	4 cut(s)	62, 64, 458, 570
XceI	RCATGY	1 cut(s)	171
XmiI	GTMKAC	1 cut(s)	354
XmnI	GAANNNNTTC	1 cut(s)	192
XspI	CTAG	2 cut(s)	297, 915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.