FvH4_6g11420

Belongs to the PdxS SNZ family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
6843668 .. 6844708
1041 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g11420.t1

Sequence Viewer

Length: 942 bp
ATGGCCGGTTCCGGAGTCGTCGCGGTTTACGGCAACGGCGCCATCACCGAGAGCAGCAGCAACAAGTCGGCCTTCGCCGTGAAGGTCGGCCTGGCCCAGATGCTCCGCGGCGGCGTCATCATGGACGTCGTCAACGCCGAGCAGGCCCGCATCGCCGAGGAGGCCGGGGCCTGCGCGGTGATGGCCCTCGAGCGGGTCCCGGCTGACATCCGGGCCCAGGGCGGCGTGGCCCGGATGTCCGACCCGCAGCTAATCAAGGAGATCAAGCAGGCCGTCACCATCCCCGTCATGGCCAAGGCTCGGATCGGCCACTTTGTTGAAGCTCAGATTCTCGAGGCCATCGGCGTCGATTACGTCGACGAGAGCGAGGTCCTCACTCTCGCCGACGAGGACAACCACATCAACAAGCACAATTTCCAGATTCCGTTCGTCTGCGGCTGCCGCAACCTCGGCGAGGCGCTGCGGCGGATCCGGGAGGGCGCGGCGATGATCCGGACCAAAGGCGAGGCCGGCACCGGCAACGTCATCGAGGCCGTGAGGCACGTCAGGTCGGTGATGGGGGACATTAGGGTTTTGAGGAACATGGATGATGACGAGGTCTTCACTTTCGCCAAGAAAATCGCGGCGCCCTACGATTTGGTGATGCAGACCAAGCAGCTCGGGAGGCTTCCCGTGGTGCACTTCGCCGCCGGGGGAGTGGCGACGCCGGCCGACGCCGCGCTGATGATGCAGCTGGGGATGGATGGGGTTTTCGTCGGGTCGGGTGTGTTCAAGAGCGGTGACCCGGTGAAGCGCGGCAGGGCGATTGTGCAGGCTGTGACCCATTACAATGACCCGAATATACTGGCTGACGTCAGCTGTGGATTGGGGGAGGCTATGGTTGGGCTCAACTTGAACGATCCCAAGGTCGAAAGGTATGCGAATCGGGTGATGGGGGAATAG

Protein Analysis

314

Amino Acids

33.33

Weight (kDa)

5.93

Isoelectric Point (pI)

36.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SOR_SNZ PF01680 25 - 230 3.3e-112 SOR/SNZ family
ThiG PF05690 210 - 274 1.4e-06 Thiazole biosynthesis protein ThiG
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 129, 855
AccB1I GGYRCC 3 cut(s) 38, 512, 625
AccBSI CCGCTC 2 cut(s) 193, 777
AccI GTMKAC 1 cut(s) 357
AccII CGCG 7 cut(s) 23, 108, 176, 482, 623, 719, 795
AccIII TCCGGA 2 cut(s) 11, 492
AclWI GGATC 5 cut(s) 311, 463, 476, 484, 893
AcoI YGGCCR 4 cut(s) 3, 291, 307, 708
AcyI GRCGYC 8 cut(s) 39, 114, 126, 345, 626, 704, 714, 852
AfiI CCNNNNNNNGG 6 cut(s) 192, 193, 217, 289, 300, 454
AgsI TTSAA 3 cut(s) 320, 772, 895
AjiI CACGTC 1 cut(s) 544
AjnI CCWGG 2 cut(s) 90, 216
AluBI AGCT 5 cut(s) 250, 323, 658, 733, 858
AluI AGCT 5 cut(s) 250, 323, 658, 733, 858
Alw21I GWGCWC 1 cut(s) 681
Alw44I GTGCAC 1 cut(s) 677
AlwI GGATC 5 cut(s) 311, 463, 476, 484, 893
Ama87I CYCGRG 3 cut(s) 188, 332, 659
Aor13HI TCCGGA 2 cut(s) 11, 492
ApaI GGGCCC 1 cut(s) 217
ApaLI GTGCAC 1 cut(s) 677
ApeKI GCWGC 7 cut(s) 54, 57, 247, 438, 460, 655, 730
AspLEI GCGC 7 cut(s) 41, 176, 460, 482, 628, 721, 795
AsuC2I CCSGG 7 cut(s) 166, 200, 212, 232, 473, 691, 785
AsuHPI GGTGA 8 cut(s) 37, 190, 268, 565, 652, 791, 799, 940
AvaI CYCGRG 3 cut(s) 188, 332, 659
AvaII GGWCC 3 cut(s) 196, 370, 495
BaeGI GKGCMC 2 cut(s) 217, 681
BalI TGGCCA 1 cut(s) 293
BamHI GGATCC 1 cut(s) 468
BanI GGYRCC 3 cut(s) 38, 512, 625
BanII GRGCYC 2 cut(s) 217, 888
BbsI GAAGAC 1 cut(s) 592
Bbv12I GWGCWC 1 cut(s) 681
BbvI GCAGC 7 cut(s) 66, 69, 259, 425, 447, 667, 742
BccI CCATC 8 cut(s) 50, 175, 287, 347, 550, 733, 737, 925
BceAI ACGGC 5 cut(s) 46, 52, 62, 257, 518
BcgI CGANNNNNNTGC 4 cut(s) 508, 542, 899, 933
BciT130I CCWGG 2 cut(s) 92, 218
BcnI CCSGG 7 cut(s) 166, 200, 212, 232, 473, 691, 785
BfoI RGCGCY 3 cut(s) 42, 461, 629
BglI GCCNNNNNGGC 2 cut(s) 143, 161
Bme1390I CCNGG 9 cut(s) 92, 166, 200, 212, 218, 232, 473, 691, 785
Bme18I GGWCC 3 cut(s) 196, 370, 495
BmeT110I CYCGRG 3 cut(s) 188, 332, 659
BmgBI CACGTC 1 cut(s) 544
BmiI GGNNCC 9 cut(s) 10, 40, 169, 197, 198, 215, 470, 514, 627
BmrFI CCNGG 9 cut(s) 92, 166, 200, 212, 218, 232, 473, 691, 785
BmsI GCATC 4 cut(s) 90, 159, 633, 717
BpiI GAAGAC 1 cut(s) 592
BpuMI CCSGG 7 cut(s) 166, 200, 212, 232, 473, 691, 785
BsaHI GRCGYC 8 cut(s) 39, 114, 126, 345, 626, 704, 714, 852
BsaWI WCCGGW 2 cut(s) 11, 492
Bsc4I CCNNNNNNNGG 6 cut(s) 192, 193, 217, 289, 300, 454
Bse118I RCCGGY 4 cut(s) 5, 509, 515, 706
Bse1I ACTGG 1 cut(s) 849
BseAI TCCGGA 2 cut(s) 11, 492
BseBI CCWGG 2 cut(s) 92, 218
BseGI GGATG 6 cut(s) 207, 240, 279, 592, 744, 748
BseLI CCNNNNNNNGG 6 cut(s) 192, 193, 217, 289, 300, 454
BseMII CTCAG 1 cut(s) 338
BseNI ACTGG 1 cut(s) 849
BseRI GAGGAG 1 cut(s) 173
BseSI GKGCMC 2 cut(s) 217, 681
BseX3I CGGCCG 1 cut(s) 708
BseXI GCAGC 7 cut(s) 66, 69, 259, 425, 447, 667, 742
BseYI CCCAGC 1 cut(s) 733
BsgI GTGCAG 1 cut(s) 830
Bsh1236I CGCG 7 cut(s) 23, 108, 176, 482, 623, 719, 795
Bsh1285I CGRYCG 1 cut(s) 711
BshNI GGYRCC 3 cut(s) 38, 512, 625
BsiEI CGRYCG 1 cut(s) 711
BsiHKAI GWGCWC 1 cut(s) 681
BsiHKCI CYCGRG 3 cut(s) 188, 332, 659
BslFI GGGAC 2 cut(s) 182, 575
BslI CCNNNNNNNGG 6 cut(s) 192, 193, 217, 289, 300, 454
BsmFI GGGAC 2 cut(s) 182, 575
BsoBI CYCGRG 3 cut(s) 188, 332, 659
Bsp120I GGGCCC 1 cut(s) 213
Bsp1286I GDGCHC 3 cut(s) 217, 681, 888
Bsp13I TCCGGA 2 cut(s) 11, 492
Bsp143I GATC 5 cut(s) 261, 303, 468, 489, 898
BspCNI CTCAG 1 cut(s) 337
BspEI TCCGGA 2 cut(s) 11, 492
BspFNI CGCG 7 cut(s) 23, 108, 176, 482, 623, 719, 795
BspLI GGNNCC 9 cut(s) 10, 40, 169, 197, 198, 215, 470, 514, 627
BspPI GGATC 5 cut(s) 311, 463, 476, 484, 893
BspT107I GGYRCC 3 cut(s) 38, 512, 625
BsrBI CCGCTC 2 cut(s) 193, 777
BsrFI RCCGGY 4 cut(s) 5, 509, 515, 706
BsrI ACTGG 1 cut(s) 849
BssAI RCCGGY 4 cut(s) 5, 509, 515, 706
BssMI GATC 5 cut(s) 261, 303, 468, 489, 898
BssNI GRCGYC 8 cut(s) 39, 114, 126, 345, 626, 704, 714, 852
BssT1I CCWWGG 2 cut(s) 294, 903
Bst2UI CCWGG 2 cut(s) 92, 218
BstACI GRCGYC 8 cut(s) 39, 114, 126, 345, 626, 704, 714, 852
BstC8I GCNNGC 7 cut(s) 144, 148, 172, 270, 511, 708, 813
BstDEI CTNAG 1 cut(s) 324
BstDSI CCRYGG 2 cut(s) 106, 672
BstEII GGTNACC 1 cut(s) 779
BstENI CCTNNNNNAGG 1 cut(s) 452
BstF5I GGATG 6 cut(s) 207, 240, 279, 592, 744, 748
BstFNI CGCG 7 cut(s) 23, 108, 176, 482, 623, 719, 795
BstH2I RGCGCY 3 cut(s) 42, 461, 629
BstHHI GCGC 7 cut(s) 41, 176, 460, 482, 628, 721, 795
BstKTI GATC 5 cut(s) 264, 306, 471, 492, 901
BstMBI GATC 5 cut(s) 261, 303, 468, 489, 898
BstMCI CGRYCG 1 cut(s) 711
BstNI CCWGG 2 cut(s) 92, 218
BstPI GGTNACC 1 cut(s) 779
BstSCI CCNGG 9 cut(s) 90, 164, 198, 210, 216, 230, 471, 689, 783
BstSLI GKGCMC 2 cut(s) 217, 681
BstUI CGCG 7 cut(s) 23, 108, 176, 482, 623, 719, 795
BstV1I GCAGC 7 cut(s) 66, 69, 259, 425, 447, 667, 742
BstV2I GAAGAC 1 cut(s) 592
BstX2I RGATCY 1 cut(s) 468
BstYI RGATCY 1 cut(s) 468
BstZI CGGCCG 1 cut(s) 708
BtgI CCRYGG 2 cut(s) 106, 672
BtgZI GCGATG 2 cut(s) 136, 500
BtrI CACGTC 1 cut(s) 544
BtsCI GGATG 6 cut(s) 207, 240, 279, 592, 744, 748
Cac8I GCNNGC 7 cut(s) 144, 148, 172, 270, 511, 708, 813
CfoI GCGC 7 cut(s) 41, 176, 460, 482, 628, 721, 795
Cfr10I RCCGGY 4 cut(s) 5, 509, 515, 706
Cfr42I CCGCGG 1 cut(s) 109
CseI GACGC 4 cut(s) 103, 334, 712, 722
CviAII CATG 3 cut(s) 121, 289, 583
DdeI CTNAG 1 cut(s) 324
DinI GGCGCC 2 cut(s) 40, 627
DpnI GATC 5 cut(s) 263, 305, 470, 491, 900
DpnII GATC 5 cut(s) 261, 303, 468, 489, 898
EaeI YGGCCR 4 cut(s) 3, 291, 307, 708
EagI CGGCCG 1 cut(s) 708
EciI GGCGGA 1 cut(s) 481
EclXI CGGCCG 1 cut(s) 708
Eco130I CCWWGG 2 cut(s) 294, 903
Eco24I GRGCYC 2 cut(s) 217, 888
Eco47I GGWCC 3 cut(s) 196, 370, 495
Eco52I CGGCCG 1 cut(s) 708
Eco88I CYCGRG 3 cut(s) 188, 332, 659
Eco91I GGTNACC 1 cut(s) 779
EcoNI CCTNNNNNAGG 1 cut(s) 452
EcoO109I RGGNCCY 3 cut(s) 168, 196, 370
EcoO65I GGTNACC 1 cut(s) 779
EcoRII CCWGG 2 cut(s) 90, 216
EcoT14I CCWWGG 2 cut(s) 294, 903
EcoT38I GRGCYC 2 cut(s) 217, 888
EgeI GGCGCC 2 cut(s) 40, 627
EheI GGCGCC 2 cut(s) 40, 627
ErhI CCWWGG 2 cut(s) 294, 903
FaeI CATG 3 cut(s) 124, 292, 586
FaiI YATR 6 cut(s) 122, 290, 584, 842, 878, 918
FalI AAGNNNNNCTT 2 cut(s) 56, 88
FaqI GGGAC 2 cut(s) 182, 575
FatI CATG 3 cut(s) 120, 288, 582
FauI CCCGC 3 cut(s) 155, 186, 252
FblI GTMKAC 1 cut(s) 357
FokI GGATG 6 cut(s) 194, 247, 266, 599, 751, 755
FriOI GRGCYC 2 cut(s) 217, 888
GlaI GCGC 7 cut(s) 40, 175, 459, 481, 627, 720, 794
GsaI CCCAGC 1 cut(s) 737
HaeII RGCGCY 3 cut(s) 42, 461, 629
HgaI GACGC 4 cut(s) 103, 334, 712, 722
HhaI GCGC 7 cut(s) 41, 176, 460, 482, 628, 721, 795
Hin1I GRCGYC 8 cut(s) 39, 114, 126, 345, 626, 704, 714, 852
Hin1II CATG 3 cut(s) 124, 292, 586
Hin6I GCGC 7 cut(s) 39, 174, 458, 480, 626, 719, 793
HinP1I GCGC 7 cut(s) 39, 174, 458, 480, 626, 719, 793
HincII GTYRAC 2 cut(s) 133, 358
HindII GTYRAC 2 cut(s) 133, 358
HinfI GANTC 4 cut(s) 15, 328, 421, 922
HphI GGTGA 8 cut(s) 37, 190, 268, 565, 652, 791, 799, 940
Hpy166II GTNNAC 4 cut(s) 28, 133, 358, 679
Hpy188I TCNGA 3 cut(s) 241, 303, 327
Hpy188III TCNNGA 6 cut(s) 12, 332, 418, 493, 661, 772
Hpy8I GTNNAC 4 cut(s) 28, 133, 358, 679
Hpy99I CGWCG 9 cut(s) 23, 131, 350, 359, 362, 389, 706, 716, 758
HpyAV CCTTC 2 cut(s) 76, 82
HpyCH4IV ACGT 5 cut(s) 126, 354, 522, 543, 852
HpyCH4V TGCA 4 cut(s) 646, 679, 730, 811
HpyF3I CTNAG 1 cut(s) 324
HpySE526I ACGT 5 cut(s) 126, 354, 522, 543, 852
Hsp92I GRCGYC 8 cut(s) 39, 114, 126, 345, 626, 704, 714, 852
Hsp92II CATG 3 cut(s) 124, 292, 586
HspAI GCGC 7 cut(s) 39, 174, 458, 480, 626, 719, 793
KasI GGCGCC 2 cut(s) 38, 625
KflI GGGWCCC 1 cut(s) 196
Kpn2I TCCGGA 2 cut(s) 11, 492
KroI GCCGGC 2 cut(s) 509, 706
KroNI GCCGGC 2 cut(s) 511, 708
KspI CCGCGG 1 cut(s) 109
Kzo9I GATC 5 cut(s) 261, 303, 468, 489, 898
LmnI GCTCC 1 cut(s) 108
Lsp1109I GCAGC 7 cut(s) 66, 69, 259, 425, 447, 667, 742
LweI GCATC 4 cut(s) 90, 159, 633, 717
MaeII ACGT 5 cut(s) 126, 354, 522, 543, 852
MaeIII GTNAC 3 cut(s) 274, 779, 817
MalI GATC 5 cut(s) 263, 305, 470, 491, 900
MbiI CCGCTC 2 cut(s) 193, 777
MboI GATC 5 cut(s) 261, 303, 468, 489, 898
MboII GAAGA 1 cut(s) 592
MflI RGATCY 1 cut(s) 468
MhlI GDGCHC 3 cut(s) 217, 681, 888
MlsI TGGCCA 1 cut(s) 293
MluCI AATT 1 cut(s) 412
MluNI TGGCCA 1 cut(s) 293
Mly113I GGCGCC 2 cut(s) 39, 626
MlyI GAGTC 1 cut(s) 24
MmeI TCCRAC 1 cut(s) 264
Mox20I TGGCCA 1 cut(s) 293
MroI TCCGGA 2 cut(s) 11, 492
MroNI GCCGGC 2 cut(s) 509, 706
MscI TGGCCA 1 cut(s) 293
MslI CAYNNNNRTG 1 cut(s) 828
Msp20I TGGCCA 1 cut(s) 293
MspA1I CMGCKG 3 cut(s) 108, 733, 858
MspR9I CCNGG 9 cut(s) 92, 166, 200, 212, 218, 232, 473, 691, 785
MvaI CCWGG 2 cut(s) 92, 218
MvnI CGCG 7 cut(s) 23, 108, 176, 482, 623, 719, 795
NaeI GCCGGC 2 cut(s) 511, 708
NarI GGCGCC 2 cut(s) 39, 626
NciI CCSGG 7 cut(s) 166, 200, 212, 232, 473, 691, 785
NdeII GATC 5 cut(s) 261, 303, 468, 489, 898
NgoMIV GCCGGC 2 cut(s) 509, 706
NlaIII CATG 3 cut(s) 124, 292, 586
NlaIV GGNNCC 9 cut(s) 10, 40, 169, 197, 198, 215, 470, 514, 627
NmeAIII GCCGAG 3 cut(s) 163, 181, 429
NmuCI GTSAC 3 cut(s) 274, 779, 817
PaeR7I CTCGAG 2 cut(s) 188, 332
PasI CCCWGGG 1 cut(s) 217
PcsI WCGNNNNNNNCGW 3 cut(s) 135, 354, 363
PdiI GCCGGC 2 cut(s) 511, 708
PfeI GAWTC 3 cut(s) 328, 421, 922
PflFI GACNNNGTC 2 cut(s) 128, 596
PfoI TCCNGGA 1 cut(s) 471
PleI GAGTC 1 cut(s) 23
PluTI GGCGCC 2 cut(s) 42, 629
PpsI GAGTC 1 cut(s) 23
PpuMI RGGWCCY 2 cut(s) 196, 370
Psp5II RGGWCCY 2 cut(s) 196, 370
Psp6I CCWGG 2 cut(s) 90, 216
PspEI GGTNACC 1 cut(s) 779
PspFI CCCAGC 1 cut(s) 733
PspGI CCWGG 2 cut(s) 90, 216
PspN4I GGNNCC 9 cut(s) 10, 40, 169, 197, 198, 215, 470, 514, 627
PspOMI GGGCCC 1 cut(s) 213
PspPPI RGGWCCY 2 cut(s) 196, 370
PspXI VCTCGAGB 1 cut(s) 188
PsuI RGATCY 1 cut(s) 468
PsyI GACNNNGTC 2 cut(s) 128, 596
PvuII CAGCTG 2 cut(s) 733, 858
RseI CAYNNNNRTG 1 cut(s) 828
SacII CCGCGG 1 cut(s) 109
SalI GTCGAC 1 cut(s) 356
Sau3AI GATC 5 cut(s) 261, 303, 468, 489, 898
SchI GAGTC 1 cut(s) 24
ScrFI CCNGG 9 cut(s) 92, 166, 200, 212, 218, 232, 473, 691, 785
SduI GDGCHC 3 cut(s) 217, 681, 888
SfaNI GCATC 4 cut(s) 90, 159, 633, 717
SfoI GGCGCC 2 cut(s) 40, 627
Sfr274I CTCGAG 2 cut(s) 188, 332
Sfr303I CCGCGG 1 cut(s) 109
SgrBI CCGCGG 1 cut(s) 109
SgrDI CGTCGACG 1 cut(s) 356
SinI GGWCC 3 cut(s) 196, 370, 495
SlaI CTCGAG 2 cut(s) 188, 332
SmiMI CAYNNNNRTG 1 cut(s) 828
SmlI CTYRAG 2 cut(s) 188, 332
SmoI CTYRAG 2 cut(s) 188, 332
Sse9I AATT 1 cut(s) 412
SspDI GGCGCC 2 cut(s) 38, 625
StyD4I CCNGG 9 cut(s) 90, 164, 198, 210, 216, 230, 471, 689, 783
StyI CCWWGG 2 cut(s) 294, 903
TaiI ACGT 5 cut(s) 129, 357, 525, 546, 855
TaqI TCGA 6 cut(s) 189, 333, 348, 357, 528, 909
TasI AATT 1 cut(s) 412
TfiI GAWTC 3 cut(s) 328, 421, 922
TseFI GTSAC 3 cut(s) 274, 779, 817
TseI GCWGC 7 cut(s) 54, 57, 247, 438, 460, 655, 730
Tsp45I GTSAC 3 cut(s) 274, 779, 817
TspGWI ACGGA 1 cut(s) 414
Tth111I GACNNNGTC 2 cut(s) 128, 596
VneI GTGCAC 1 cut(s) 677
VpaK11BI GGWCC 3 cut(s) 196, 370, 495
XagI CCTNNNNNAGG 1 cut(s) 452
XcmI CCANNNNNNNNNTGG 1 cut(s) 286
XhoI CTCGAG 2 cut(s) 188, 332
XmiI GTMKAC 1 cut(s) 357
ZraI GACGTC 2 cut(s) 127, 853
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.