Prupe.6G277500_v2.0.a1

Belongs to the PdxS SNZ family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
26072894 .. 26074112
1219 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G277500.1

Sequence Viewer

Length: 930 bp
ATGGCGGGTTCCGGCGTGGTGGCTGTGTACGGAAATGGAGCAATCACCGAGAGCAAGCAATCGCCGTTCTCCGTCAAAGTGGGCCTGGCCCAAATGCTCCGCGGCGGCGTCATAATGGACGTCGTCAACGCCGAGCAGGCTCGAATTGCAGAGGAGGCAGGCGCGTGCGCCGTCATGGCCCTGGAGCGGGTGCCCGCAGATATCCGAGCCCAGGGTGGGGTGGCTCGAATGTCCGACCCGCAACTCATCAAAGAAATCAAGCAGGCCGTGACCATACCCGTCATGGCCAAGGCCCGAATCGGCCACTTCGTCGAGGCCCAAATCCTGGAAGCCATCGGCGTCGATTACGTTGACGAGAGCGAGGTCCTGACCCTCGCCGATGAAGAGCACCACATCAACAAGCACAATTTCCGGGTGCCGTTCGTCTGCGGGTGCCGGAATCTCGGCGAGGCGCTCCGCCGAGTCCGAGAAGGAGCGGCTATGATCCGGACCAAGGGTGAGGCCGGCACGGGGAACATCATCGAAGCGGTGAGGCACGTGCGGTCCGTGATGGGGGACATTAGGGTTTTGCGGAACATGGACGACGACGAGGTGTTCACTTTCGCGAAGAAGATCGCGGCGCCGTACGATCTGGTGATGCAGACGAAGCAGCTGGGGAGGCTGCCTGTAGTGCACTTCGCGGCGGGAGGGGTGGCGACGCCGGCGGATGCGGCGCTGATGATGCAGCTGGGTTGCGACGGGGTGTTTGTCGGGTCCGGCGTGTTCAAGAGCGGTGACCCGGTGAAGCGTGGGAGGGCGATTGTGCAGGCTGTGACCCATTACAGGGACCCGGATGTGCTGGCTGAGGTGAGTTGCGGGTTGGGCGAGGCCATGGTTGGGTTGAATTTGAAGGACGAGAAGGTGGAGAGGTTTGCTAATCGGTCTGAGTGA

Protein Analysis

310

Amino Acids

33.11

Weight (kDa)

6.2

Isoelectric Point (pI)

40.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 123
AccB1I GGYRCC 4 cut(s) 190, 415, 432, 619
AccB7I CCANNNNNTGG 1 cut(s) 325
AccBSI CCGCTC 3 cut(s) 187, 476, 771
AccII CGCG 5 cut(s) 102, 164, 605, 617, 680
AccIII TCCGGA 1 cut(s) 486
AclWI GGATC 1 cut(s) 478
AcoI YGGCCR 2 cut(s) 285, 301
AcsI RAATTY 1 cut(s) 883
AcvI CACGTG 1 cut(s) 538
AcyI GRCGYC 5 cut(s) 108, 120, 339, 620, 698
AfaI GTAC 2 cut(s) 29, 626
AgsI TTSAA 3 cut(s) 766, 883, 889
AjnI CCWGG 4 cut(s) 84, 180, 210, 324
AluBI AGCT 2 cut(s) 652, 727
AluI AGCT 2 cut(s) 652, 727
Alw21I GWGCWC 2 cut(s) 390, 675
Alw44I GTGCAC 1 cut(s) 671
AlwI GGATC 1 cut(s) 478
Aor13HI TCCGGA 1 cut(s) 486
ApaLI GTGCAC 1 cut(s) 671
ApeKI GCWGC 3 cut(s) 649, 661, 724
ApoI RAATTY 1 cut(s) 883
ArsI GACNNNNNNTTYG 2 cut(s) 728, 760
AspLEI GCGC 5 cut(s) 164, 170, 454, 622, 715
AsuC2I CCSGG 3 cut(s) 413, 779, 830
AsuHPI GGTGA 7 cut(s) 37, 509, 541, 646, 785, 793, 859
AvaII GGWCC 5 cut(s) 364, 489, 543, 753, 826
BaeGI GKGCMC 2 cut(s) 195, 675
BalI TGGCCA 1 cut(s) 287
BanI GGYRCC 4 cut(s) 190, 415, 432, 619
BanII GRGCYC 1 cut(s) 211
BbrPI CACGTG 1 cut(s) 538
Bbv12I GWGCWC 2 cut(s) 390, 675
BbvCI CCTCAGC 1 cut(s) 843
BbvI GCAGC 3 cut(s) 648, 661, 736
BccI CCATC 2 cut(s) 341, 544
BceAI ACGGC 5 cut(s) 49, 155, 251, 403, 607
BciT130I CCWGG 4 cut(s) 86, 182, 212, 326
BcnI CCSGG 3 cut(s) 413, 779, 830
BfmI CTRYAG 1 cut(s) 666
BfoI RGCGCY 3 cut(s) 455, 623, 716
BglI GCCNNNNNGGC 2 cut(s) 137, 176
BisI GCNGC 9 cut(s) 103, 106, 477, 618, 650, 662, 681, 711, 725
BlsI GCNGC 9 cut(s) 104, 107, 478, 619, 651, 663, 682, 712, 726
Bme1390I CCNGG 7 cut(s) 86, 182, 212, 326, 413, 779, 830
Bme18I GGWCC 5 cut(s) 364, 489, 543, 753, 826
BmiI GGNNCC 8 cut(s) 10, 192, 417, 434, 621, 754, 827, 828
BmrFI CCNGG 7 cut(s) 86, 182, 212, 326, 413, 779, 830
BmsI GCATC 3 cut(s) 627, 697, 711
BpmI CTGGAG 1 cut(s) 203
Bpu10I CCTNAGC 1 cut(s) 843
BpuMI CCSGG 3 cut(s) 413, 779, 830
BsaAI YACGTR 1 cut(s) 538
BsaHI GRCGYC 5 cut(s) 108, 120, 339, 620, 698
BsaJI CCNNGG 7 cut(s) 100, 180, 210, 211, 288, 492, 870
BsaWI WCCGGW 1 cut(s) 486
Bse118I RCCGGY 2 cut(s) 503, 700
BseAI TCCGGA 1 cut(s) 486
BseBI CCWGG 4 cut(s) 86, 182, 212, 326
BseDI CCNNGG 7 cut(s) 100, 180, 210, 211, 288, 492, 870
BseGI GGATG 2 cut(s) 712, 838
BseMII CTCAG 2 cut(s) 834, 915
BseRI GAGGAG 1 cut(s) 167
BseSI GKGCMC 2 cut(s) 195, 675
BseXI GCAGC 3 cut(s) 648, 661, 736
BseYI CCCAGC 2 cut(s) 652, 727
BsgI GTGCAG 1 cut(s) 824
Bsh1236I CGCG 5 cut(s) 102, 164, 605, 617, 680
BshNI GGYRCC 4 cut(s) 190, 415, 432, 619
BsiHKAI GWGCWC 2 cut(s) 390, 675
BsiSI CCGG 9 cut(s) 12, 412, 436, 487, 504, 701, 756, 779, 830
BsiWI CGTACG 1 cut(s) 624
BslFI GGGAC 2 cut(s) 569, 839
BsmFI GGGAC 2 cut(s) 569, 839
Bsp1286I GDGCHC 4 cut(s) 195, 211, 390, 675
Bsp13I TCCGGA 1 cut(s) 486
Bsp143I GATC 3 cut(s) 483, 612, 628
Bsp19I CCATGG 1 cut(s) 870
Bsp68I TCGCGA 1 cut(s) 605
BspCNI CTCAG 2 cut(s) 835, 916
BspEI TCCGGA 1 cut(s) 486
BspFNI CGCG 5 cut(s) 102, 164, 605, 617, 680
BspLI GGNNCC 8 cut(s) 10, 192, 417, 434, 621, 754, 827, 828
BspPI GGATC 1 cut(s) 478
BspQI GCTCTTC 1 cut(s) 378
BspT107I GGYRCC 4 cut(s) 190, 415, 432, 619
BsrBI CCGCTC 3 cut(s) 187, 476, 771
BsrFI RCCGGY 2 cut(s) 503, 700
BssAI RCCGGY 2 cut(s) 503, 700
BssECI CCNNGG 7 cut(s) 100, 180, 210, 211, 288, 492, 870
BssMI GATC 3 cut(s) 483, 612, 628
BssNI GRCGYC 5 cut(s) 108, 120, 339, 620, 698
BssT1I CCWWGG 3 cut(s) 288, 492, 870
Bst2UI CCWGG 4 cut(s) 86, 182, 212, 326
Bst6I CTCTTC 1 cut(s) 378
BstACI GRCGYC 5 cut(s) 108, 120, 339, 620, 698
BstBAI YACGTR 1 cut(s) 538
BstDEI CTNAG 2 cut(s) 843, 924
BstDSI CCRYGG 2 cut(s) 100, 870
BstEII GGTNACC 1 cut(s) 773
BstF5I GGATG 2 cut(s) 712, 838
BstFNI CGCG 5 cut(s) 102, 164, 605, 617, 680
BstH2I RGCGCY 3 cut(s) 455, 623, 716
BstHHI GCGC 5 cut(s) 164, 170, 454, 622, 715
BstKTI GATC 3 cut(s) 486, 615, 631
BstMBI GATC 3 cut(s) 483, 612, 628
BstNI CCWGG 4 cut(s) 86, 182, 212, 326
BstPI GGTNACC 1 cut(s) 773
BstSCI CCNGG 7 cut(s) 84, 180, 210, 324, 411, 777, 828
BstSFI CTRYAG 1 cut(s) 666
BstSLI GKGCMC 2 cut(s) 195, 675
BstUI CGCG 5 cut(s) 102, 164, 605, 617, 680
BstV1I GCAGC 3 cut(s) 648, 661, 736
BtgI CCRYGG 2 cut(s) 100, 870
BtsCI GGATG 2 cut(s) 712, 838
BtuMI TCGCGA 1 cut(s) 605
CfoI GCGC 5 cut(s) 164, 170, 454, 622, 715
Cfr10I RCCGGY 2 cut(s) 503, 700
Cfr42I CCGCGG 1 cut(s) 103
CpoI CGGWCCG 1 cut(s) 543
CseI GACGC 3 cut(s) 97, 328, 706
Csp6I GTAC 2 cut(s) 28, 625
CspI CGGWCCG 1 cut(s) 543
CviAII CATG 4 cut(s) 175, 283, 577, 871
CviQI GTAC 2 cut(s) 28, 625
DdeI CTNAG 2 cut(s) 843, 924
DinI GGCGCC 1 cut(s) 621
DpnI GATC 3 cut(s) 485, 614, 630
DpnII GATC 3 cut(s) 483, 612, 628
EaeI YGGCCR 2 cut(s) 285, 301
Eam1104I CTCTTC 1 cut(s) 378
EarI CTCTTC 1 cut(s) 378
EciI GGCGGA 2 cut(s) 446, 719
Eco130I CCWWGG 3 cut(s) 288, 492, 870
Eco24I GRGCYC 1 cut(s) 211
Eco32I GATATC 1 cut(s) 202
Eco47I GGWCC 5 cut(s) 364, 489, 543, 753, 826
Eco72I CACGTG 1 cut(s) 538
Eco91I GGTNACC 1 cut(s) 773
EcoO109I RGGNCCY 2 cut(s) 364, 826
EcoO65I GGTNACC 1 cut(s) 773
EcoRII CCWGG 4 cut(s) 84, 180, 210, 324
EcoRV GATATC 1 cut(s) 202
EcoT14I CCWWGG 3 cut(s) 288, 492, 870
EcoT38I GRGCYC 1 cut(s) 211
EgeI GGCGCC 1 cut(s) 621
EheI GGCGCC 1 cut(s) 621
ErhI CCWWGG 3 cut(s) 288, 492, 870
FaeI CATG 4 cut(s) 178, 286, 580, 874
FaiI YATR 7 cut(s) 113, 176, 275, 284, 482, 578, 872
FaqI GGGAC 2 cut(s) 569, 839
FatI CATG 4 cut(s) 174, 282, 576, 870
FauI CCCGC 6 cut(s) 180, 202, 246, 422, 676, 848
Fnu4HI GCNGC 9 cut(s) 103, 106, 477, 618, 650, 662, 681, 711, 725
FokI GGATG 2 cut(s) 719, 845
FriOI GRGCYC 1 cut(s) 211
Fsp4HI GCNGC 9 cut(s) 103, 106, 477, 618, 650, 662, 681, 711, 725
GlaI GCGC 5 cut(s) 163, 169, 453, 621, 714
GluI GCNGC 9 cut(s) 103, 106, 477, 618, 650, 662, 681, 711, 725
GsaI CCCAGC 2 cut(s) 656, 731
GsuI CTGGAG 1 cut(s) 203
HaeII RGCGCY 3 cut(s) 455, 623, 716
HapII CCGG 9 cut(s) 12, 412, 436, 487, 504, 701, 756, 779, 830
HgaI GACGC 3 cut(s) 97, 328, 706
HhaI GCGC 5 cut(s) 164, 170, 454, 622, 715
Hin1I GRCGYC 5 cut(s) 108, 120, 339, 620, 698
Hin1II CATG 4 cut(s) 178, 286, 580, 874
Hin6I GCGC 5 cut(s) 162, 168, 452, 620, 713
HinP1I GCGC 5 cut(s) 162, 168, 452, 620, 713
HincII GTYRAC 2 cut(s) 127, 352
HindII GTYRAC 2 cut(s) 127, 352
HinfI GANTC 3 cut(s) 297, 439, 462
HpaII CCGG 9 cut(s) 12, 412, 436, 487, 504, 701, 756, 779, 830
HphI GGTGA 7 cut(s) 37, 509, 541, 646, 785, 793, 859
Hpy166II GTNNAC 5 cut(s) 28, 127, 352, 597, 673
Hpy188I TCNGA 4 cut(s) 206, 235, 467, 925
Hpy188III TCNNGA 4 cut(s) 367, 487, 604, 766
Hpy8I GTNNAC 5 cut(s) 28, 127, 352, 597, 673
Hpy99I CGWCG 7 cut(s) 125, 314, 344, 587, 590, 700, 740
HpyAV CCTTC 3 cut(s) 464, 883, 892
HpyCH4IV ACGT 3 cut(s) 120, 348, 537
HpyCH4V TGCA 5 cut(s) 149, 640, 673, 724, 805
HpyF3I CTNAG 2 cut(s) 843, 924
HpySE526I ACGT 3 cut(s) 120, 348, 537
Hsp92I GRCGYC 5 cut(s) 108, 120, 339, 620, 698
Hsp92II CATG 4 cut(s) 178, 286, 580, 874
HspAI GCGC 5 cut(s) 162, 168, 452, 620, 713
KasI GGCGCC 1 cut(s) 619
KflI GGGWCCC 1 cut(s) 826
Kpn2I TCCGGA 1 cut(s) 486
KroI GCCGGC 2 cut(s) 503, 700
KroNI GCCGGC 2 cut(s) 505, 702
KspI CCGCGG 1 cut(s) 103
Kzo9I GATC 3 cut(s) 483, 612, 628
LguI GCTCTTC 1 cut(s) 378
LmnI GCTCC 5 cut(s) 38, 102, 184, 459, 473
Lsp1109I GCAGC 3 cut(s) 648, 661, 736
LweI GCATC 3 cut(s) 627, 697, 711
MaeII ACGT 3 cut(s) 120, 348, 537
MaeIII GTNAC 3 cut(s) 268, 773, 811
MalI GATC 3 cut(s) 485, 614, 630
MbiI CCGCTC 3 cut(s) 187, 476, 771
MboI GATC 3 cut(s) 483, 612, 628
MboII GAAGA 3 cut(s) 395, 619, 622
MhlI GDGCHC 4 cut(s) 195, 211, 390, 675
MlsI TGGCCA 1 cut(s) 287
MluCI AATT 3 cut(s) 144, 406, 883
MluNI TGGCCA 1 cut(s) 287
Mly113I GGCGCC 1 cut(s) 620
MlyI GAGTC 1 cut(s) 471
MmeI TCCRAC 1 cut(s) 258
Mox20I TGGCCA 1 cut(s) 287
MreI CGCCGGCG 1 cut(s) 700
MroI TCCGGA 1 cut(s) 486
MroNI GCCGGC 2 cut(s) 503, 700
MscI TGGCCA 1 cut(s) 287
Msp20I TGGCCA 1 cut(s) 287
MspA1I CMGCKG 3 cut(s) 102, 652, 727
MspI CCGG 9 cut(s) 12, 412, 436, 487, 504, 701, 756, 779, 830
MspR9I CCNGG 7 cut(s) 86, 182, 212, 326, 413, 779, 830
MvaI CCWGG 4 cut(s) 86, 182, 212, 326
MvnI CGCG 5 cut(s) 102, 164, 605, 617, 680
NaeI GCCGGC 2 cut(s) 505, 702
NarI GGCGCC 1 cut(s) 620
NciI CCSGG 3 cut(s) 413, 779, 830
NcoI CCATGG 1 cut(s) 870
NdeII GATC 3 cut(s) 483, 612, 628
NgoMIV GCCGGC 2 cut(s) 503, 700
NlaIII CATG 4 cut(s) 178, 286, 580, 874
NlaIV GGNNCC 8 cut(s) 10, 192, 417, 434, 621, 754, 827, 828
NmeAIII GCCGAG 3 cut(s) 157, 423, 485
NmuCI GTSAC 3 cut(s) 268, 773, 811
NruI TCGCGA 1 cut(s) 605
PasI CCCWGGG 1 cut(s) 211
PciSI GCTCTTC 1 cut(s) 378
PcsI WCGNNNNNNNCGW 4 cut(s) 129, 306, 543, 756
PdiI GCCGGC 2 cut(s) 505, 702
PfeI GAWTC 2 cut(s) 297, 439
Pfl23II CGTACG 1 cut(s) 624
PflFI GACNNNGTC 1 cut(s) 122
PflMI CCANNNNNTGG 1 cut(s) 325
PfoI TCCNGGA 1 cut(s) 324
PkrI GCNGC 9 cut(s) 104, 107, 478, 619, 651, 663, 682, 712, 726
PleI GAGTC 1 cut(s) 470
PluTI GGCGCC 1 cut(s) 623
PmaCI CACGTG 1 cut(s) 538
PmlI CACGTG 1 cut(s) 538
PpsI GAGTC 1 cut(s) 470
Ppu21I YACGTR 1 cut(s) 538
PpuMI RGGWCCY 2 cut(s) 364, 826
Psp5II RGGWCCY 2 cut(s) 364, 826
Psp6I CCWGG 4 cut(s) 84, 180, 210, 324
PspCI CACGTG 1 cut(s) 538
PspEI GGTNACC 1 cut(s) 773
PspFI CCCAGC 2 cut(s) 652, 727
PspGI CCWGG 4 cut(s) 84, 180, 210, 324
PspLI CGTACG 1 cut(s) 624
PspN4I GGNNCC 8 cut(s) 10, 192, 417, 434, 621, 754, 827, 828
PspPPI RGGWCCY 2 cut(s) 364, 826
PsyI GACNNNGTC 1 cut(s) 122
PvuII CAGCTG 2 cut(s) 652, 727
RruI TCGCGA 1 cut(s) 605
RsaI GTAC 2 cut(s) 29, 626
RsaNI GTAC 2 cut(s) 28, 625
Rsr2I CGGWCCG 1 cut(s) 543
RsrII CGGWCCG 1 cut(s) 543
SacII CCGCGG 1 cut(s) 103
SapI GCTCTTC 1 cut(s) 378
SatI GCNGC 9 cut(s) 103, 106, 477, 618, 650, 662, 681, 711, 725
Sau3AI GATC 3 cut(s) 483, 612, 628
SchI GAGTC 1 cut(s) 471
ScrFI CCNGG 7 cut(s) 86, 182, 212, 326, 413, 779, 830
SduI GDGCHC 4 cut(s) 195, 211, 390, 675
SfaNI GCATC 3 cut(s) 627, 697, 711
SfcI CTRYAG 1 cut(s) 666
SfoI GGCGCC 1 cut(s) 621
Sfr303I CCGCGG 1 cut(s) 103
SgrAI CRCCGGYG 1 cut(s) 700
SgrBI CCGCGG 1 cut(s) 103
SinI GGWCC 5 cut(s) 364, 489, 543, 753, 826
Sse9I AATT 3 cut(s) 144, 406, 883
SspDI GGCGCC 1 cut(s) 619
StyD4I CCNGG 7 cut(s) 84, 180, 210, 324, 411, 777, 828
StyI CCWWGG 3 cut(s) 288, 492, 870
TaiI ACGT 3 cut(s) 123, 351, 540
TaqI TCGA 5 cut(s) 142, 226, 312, 342, 522
TaqII GACCGA 1 cut(s) 909
TasI AATT 3 cut(s) 144, 406, 883
TauI GCSGC 6 cut(s) 105, 108, 479, 620, 683, 713
TfiI GAWTC 2 cut(s) 297, 439
TseFI GTSAC 3 cut(s) 268, 773, 811
TseI GCWGC 3 cut(s) 649, 661, 724
Tsp45I GTSAC 3 cut(s) 268, 773, 811
TspDTI ATGAA 1 cut(s) 396
TspGWI ACGGA 3 cut(s) 45, 61, 535
Tth111I GACNNNGTC 1 cut(s) 122
Van91I CCANNNNNTGG 1 cut(s) 325
VneI GTGCAC 1 cut(s) 671
VpaK11BI GGWCC 5 cut(s) 364, 489, 543, 753, 826
XapI RAATTY 1 cut(s) 883
XcmI CCANNNNNNNNNTGG 1 cut(s) 280
ZraI GACGTC 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.