Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003370

Physical Location & Seq

Genomic Coordinates Reverse (-)

14400393 .. 14402176

Gene Structure 1784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00011400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGCCGACAGCGGAGTCGTCACCGTGTACGGCAAGGGCGCCATCTACGAGACCGGCAGCGCCAAGAAGTCCTCCTACCCCGTCAAAGTGGGCCTCGCCCAAATGCTCCGCGGCGGCGTCATCATGGACGTCGTCACCCCCGCCCAGGCCCGCATCGCCGAGGAAGCCGGCGCCTGCGCCGTCATGGCCCTCGAGCGCGTCCCTGCCGATATCCGCGCCCACGGTGGCGTCGCCCGCATGTCCGACCCTCAACTCATCAAAGAGATCAAACGGTCCGTCACCATCCCCGTCATGGCCAAGTGCCGCATCGGCCACTTCGCCGAGGCACAGATCCTCGAGGCCATCGGAGTCGACTACGTCGACGAGTCAGAGGTCCTGACCGTCGCCGACGACGACAACCACATCAACAAGCACGACTTCCAGGTCCCTTTCGTCTGCGGCTGCCGCAACCTCGGCGAGGCCCTCCGCCGCATCCGGGAAGGCGCCGCCATGATCCGGACCAAAGGCGAGGCCGGCACCGGCAACATCGTCGAGGCAGTGAGACATGTCCGGTCGGTCATGGGCGAGGTCCGTGTCTTGCGGAACATGGACGACGACGAGGTCTTCACGTTTGCCAAGAAGATCGCGGCGCCGTACGACATGGTCATGCAGACGAAGCAGATGGGGAGGCTGCCGGTGGTGCACTTCGCCGCCGGAGGGGTGGCGACGCCGGCGGACGCGGCGCTGATGATGCAGTTGGGGTGTGATGGGGTGTTTGTGGGGTCGGGAGTTTTCAAGAGTGGGGAGCCGGCGCGGCGGGCCAGGGCGATTGTGCAGGCGGCGACGCATTATAGTGACCCGGAGGTGCTGGCGGAGGTGAGTTGCGGATTGGGGGAGGCCATGGTGGGGATTAATCTCAGTGACAACAACGTGGAGAGGTATGCTTATAGGTCTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00750 map00750

Pfam Domains

Protein Families

SOR_SNZ ThiG

Protein Analysis

312

Amino Acids

33.41

Weight (kDa)

6.02

Isoelectric Point (pI)

37.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SOR_SNZ	PF01680	28 - 231	2.3e-110	SOR/SNZ family
ThiG	PF05690	216 - 273	3.7e-06	Thiazole biosynthesis protein ThiG

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38230 AT5G01410 AT5G01410
fragaria_vesca	FvH4_3g38650 FvH4_6g11420
malus_domestica	MD04G1153300.v1.1 MD11G1073500.v1.1
prunus_persica	Prupe.6G277500_v2.0.a1 Prupe.8G053100_v2.0.a1
pyrus_communis	pycom04g13870 pycom11g06100 pycom12g15860
rosa_chinensis	RchiOBHm_Chr1g0327251 RchiOBHm_Chr3g0463101 RchiOBHm_Chr5g0069681
rosa_laevigata	RLG00000024812 RLG00000036085
rosa_multiflora	Rmu_sc0000738.1_g000036 Rmu_sc0000766.1_g000039 Rmu_sc0001791.1_g000010 Rmu_sc0007688.1_g000003
rosa_roxburghii	Rroxscaffold_1G00011400 Rroxscaffold_6G00416960
rosa_rugosa	Rorug03G0061400 Rorug05G0399200
rosa_samantha	Rh2CG209300 Rh3AG119600 Rh3BG124100 Rh3CG126000 Rh3DG125100 Rh5BG265000 Rh5BG475000 Rh5CG498600 Rh5DG486500
rosa_wichuraiana	Rw3G010120 Rw5G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	14, 422, 599
AatII	GACGTC	1 cut(s)	132
AbsI	CCTCGAGG	1 cut(s)	335
AccB1I	GGYRCC	5 cut(s)	38, 170, 482, 515, 628
AccI	GTMKAC	2 cut(s)	351, 360
AccII	CGCG	6 cut(s)	111, 198, 216, 626, 719, 793
AccIII	TCCGGA	1 cut(s)	495
AclWI	GGATC	2 cut(s)	325, 487
AcoI	YGGCCR	3 cut(s)	3, 294, 310
AcyI	GRCGYC	8 cut(s)	39, 117, 129, 171, 228, 483, 629, 707
AfaI	GTAC	2 cut(s)	29, 635
AfiI	CCNNNNNNNGG	7 cut(s)	145, 292, 457, 475, 495, 696, 885
AflIII	ACRYGT	1 cut(s)	544
AgsI	TTSAA	1 cut(s)	775
AjnI	CCWGG	3 cut(s)	144, 420, 800
Alw21I	GWGCWC	1 cut(s)	684
Alw26I	GTCTC	2 cut(s)	44, 535
Alw44I	GTGCAC	1 cut(s)	680
AlwI	GGATC	2 cut(s)	325, 487
Ama87I	CYCGRG	2 cut(s)	191, 335
Aor13HI	TCCGGA	1 cut(s)	495
ApaLI	GTGCAC	1 cut(s)	680
ApeKI	GCWGC	3 cut(s)	57, 441, 670
ArsI	GACNNNNNNTTYG	2 cut(s)	261, 293
AseI	ATTAAT	1 cut(s)	891
AsuC2I	CCSGG	2 cut(s)	476, 839
AsuHPI	GGTGA	4 cut(s)	13, 127, 271, 868
AvaI	CYCGRG	2 cut(s)	191, 335
AvaII	GGWCC	5 cut(s)	273, 373, 424, 498, 568
BaeGI	GKGCMC	1 cut(s)	684
BalI	TGGCCA	1 cut(s)	296
BanI	GGYRCC	5 cut(s)	38, 170, 482, 515, 628
BarI	GAAGNNNNNNTAC	2 cut(s)	59, 91
BbsI	GAAGAC	1 cut(s)	595
Bbv12I	GWGCWC	1 cut(s)	684
BbvI	GCAGC	3 cut(s)	69, 428, 657
BccI	CCATC	5 cut(s)	50, 290, 350, 655, 740
BceAI	ACGGC	3 cut(s)	46, 164, 616
BcgI	CGANNNNNNTGC	2 cut(s)	511, 545
BciT130I	CCWGG	3 cut(s)	146, 422, 802
BcnI	CCSGG	2 cut(s)	476, 839
BcoDI	GTCTC	2 cut(s)	44, 535
BfoI	RGCGCY	6 cut(s)	42, 63, 174, 486, 632, 725
BglI	GCCNNNNNGGC	3 cut(s)	185, 309, 793
Bme1390I	CCNGG	5 cut(s)	146, 422, 476, 802, 839
Bme18I	GGWCC	5 cut(s)	273, 373, 424, 498, 568
BmeT110I	CYCGRG	2 cut(s)	191, 335
BmiI	GGNNCC	7 cut(s)	40, 172, 426, 484, 517, 630, 786
BmrFI	CCNGG	5 cut(s)	146, 422, 476, 802, 839
BmsI	GCATC	4 cut(s)	162, 315, 480, 720
BpiI	GAAGAC	1 cut(s)	595
BpuMI	CCSGG	2 cut(s)	476, 839
BsaHI	GRCGYC	8 cut(s)	39, 117, 129, 171, 228, 483, 629, 707
BsaI	GGTCTC	1 cut(s)	44
BsaJI	CCNNGG	8 cut(s)	109, 144, 159, 220, 321, 451, 801, 879
BsaWI	WCCGGW	2 cut(s)	495, 549
Bsc4I	CCNNNNNNNGG	7 cut(s)	145, 292, 457, 475, 495, 696, 885
Bse118I	RCCGGY	7 cut(s)	53, 167, 512, 518, 673, 709, 787
BseAI	TCCGGA	1 cut(s)	495
BseBI	CCWGG	3 cut(s)	146, 422, 802
BseDI	CCNNGG	8 cut(s)	109, 144, 159, 220, 321, 451, 801, 879
BseGI	GGATG	2 cut(s)	282, 471
BseLI	CCNNNNNNNGG	7 cut(s)	145, 292, 457, 475, 495, 696, 885
BseMII	CTCAG	2 cut(s)	910, 924
BseSI	GKGCMC	1 cut(s)	684
BseXI	GCAGC	3 cut(s)	69, 428, 657
BsgI	GTGCAG	1 cut(s)	833
Bsh1236I	CGCG	6 cut(s)	111, 198, 216, 626, 719, 793
Bsh1285I	CGRYCG	1 cut(s)	554
BshNI	GGYRCC	5 cut(s)	38, 170, 482, 515, 628
BsiEI	CGRYCG	1 cut(s)	554
BsiHKAI	GWGCWC	1 cut(s)	684
BsiHKCI	CYCGRG	2 cut(s)	191, 335
BsiWI	CGTACG	1 cut(s)	633
BslFI	GGGAC	2 cut(s)	185, 410
BslI	CCNNNNNNNGG	7 cut(s)	145, 292, 457, 475, 495, 696, 885
BsmAI	GTCTC	2 cut(s)	44, 535
BsmFI	GGGAC	2 cut(s)	185, 410
Bso31I	GGTCTC	1 cut(s)	44
BsoBI	CYCGRG	2 cut(s)	191, 335
Bsp1286I	GDGCHC	1 cut(s)	684
Bsp13I	TCCGGA	1 cut(s)	495
Bsp143I	GATC	4 cut(s)	264, 330, 492, 621
Bsp19I	CCATGG	1 cut(s)	879
BspCNI	CTCAG	2 cut(s)	909, 925
BspEI	TCCGGA	1 cut(s)	495
BspFNI	CGCG	6 cut(s)	111, 198, 216, 626, 719, 793
BspLI	GGNNCC	7 cut(s)	40, 172, 426, 484, 517, 630, 786
BspPI	GGATC	2 cut(s)	325, 487
BspT107I	GGYRCC	5 cut(s)	38, 170, 482, 515, 628
BspTNI	GGTCTC	1 cut(s)	44
BsrFI	RCCGGY	7 cut(s)	53, 167, 512, 518, 673, 709, 787
BssAI	RCCGGY	7 cut(s)	53, 167, 512, 518, 673, 709, 787
BssECI	CCNNGG	8 cut(s)	109, 144, 159, 220, 321, 451, 801, 879
BssMI	GATC	4 cut(s)	264, 330, 492, 621
BssNI	GRCGYC	8 cut(s)	39, 117, 129, 171, 228, 483, 629, 707
BssT1I	CCWWGG	1 cut(s)	879
Bst2UI	CCWGG	3 cut(s)	146, 422, 802
Bst4CI	ACNGT	4 cut(s)	25, 224, 273, 382
BstACI	GRCGYC	8 cut(s)	39, 117, 129, 171, 228, 483, 629, 707
BstDEI	CTNAG	2 cut(s)	896, 933
BstDSI	CCRYGG	3 cut(s)	109, 220, 879
BstENI	CCTNNNNNAGG	1 cut(s)	455
BstF5I	GGATG	2 cut(s)	282, 471
BstFNI	CGCG	6 cut(s)	111, 198, 216, 626, 719, 793
BstH2I	RGCGCY	6 cut(s)	42, 63, 174, 486, 632, 725
BstKTI	GATC	4 cut(s)	267, 333, 495, 624
BstMAI	GTCTC	2 cut(s)	44, 535
BstMBI	GATC	4 cut(s)	264, 330, 492, 621
BstMCI	CGRYCG	1 cut(s)	554
BstNI	CCWGG	3 cut(s)	146, 422, 802
BstNSI	RCATGY	2 cut(s)	241, 548
BstSCI	CCNGG	5 cut(s)	144, 420, 474, 800, 837
BstSLI	GKGCMC	1 cut(s)	684
BstUI	CGCG	6 cut(s)	111, 198, 216, 626, 719, 793
BstV1I	GCAGC	3 cut(s)	69, 428, 657
BstV2I	GAAGAC	1 cut(s)	595
BstX2I	RGATCY	1 cut(s)	330
BstYI	RGATCY	1 cut(s)	330
BtgI	CCRYGG	3 cut(s)	109, 220, 879
BtgZI	GCGATG	1 cut(s)	139
BtsCI	GGATG	2 cut(s)	282, 471
BtsI	GCAGTG	1 cut(s)	543
BtsIMutI	CAGTG	2 cut(s)	543, 904
Cfr10I	RCCGGY	7 cut(s)	53, 167, 512, 518, 673, 709, 787
Cfr42I	CCGCGG	1 cut(s)	112
CpoI	CGGWCCG	1 cut(s)	273
CseI	GACGC	6 cut(s)	106, 187, 217, 715, 725, 832
Csp6I	GTAC	2 cut(s)	28, 634
CspI	CGGWCCG	1 cut(s)	273
CviQI	GTAC	2 cut(s)	28, 634
DdeI	CTNAG	2 cut(s)	896, 933
DinI	GGCGCC	4 cut(s)	40, 172, 484, 630
DpnI	GATC	4 cut(s)	266, 332, 494, 623
DpnII	GATC	4 cut(s)	264, 330, 492, 621
DrdI	GACNNNNNNGTC	3 cut(s)	14, 422, 599
DseDI	GACNNNNNNGTC	3 cut(s)	14, 422, 599
EaeI	YGGCCR	3 cut(s)	3, 294, 310
EciI	GGCGGA	3 cut(s)	455, 728, 866
Eco130I	CCWWGG	1 cut(s)	879
Eco31I	GGTCTC	1 cut(s)	44
Eco32I	GATATC	1 cut(s)	211
Eco47I	GGWCC	5 cut(s)	273, 373, 424, 498, 568
Eco88I	CYCGRG	2 cut(s)	191, 335
EcoNI	CCTNNNNNAGG	1 cut(s)	455
EcoO109I	RGGNCCY	3 cut(s)	373, 424, 460
EcoRII	CCWGG	3 cut(s)	144, 420, 800
EcoRV	GATATC	1 cut(s)	211
EcoT14I	CCWWGG	1 cut(s)	879
EgeI	GGCGCC	4 cut(s)	40, 172, 484, 630
EheI	GGCGCC	4 cut(s)	40, 172, 484, 630
ErhI	CCWWGG	1 cut(s)	879
FalI	AAGNNNNNCTT	2 cut(s)	401, 433
FaqI	GGGAC	2 cut(s)	185, 410
FauI	CCCGC	4 cut(s)	148, 158, 242, 789
FblI	GTMKAC	2 cut(s)	351, 360
FokI	GGATG	2 cut(s)	269, 458
HaeII	RGCGCY	6 cut(s)	42, 63, 174, 486, 632, 725
HgaI	GACGC	6 cut(s)	106, 187, 217, 715, 725, 832
Hin1I	GRCGYC	8 cut(s)	39, 117, 129, 171, 228, 483, 629, 707
HincII	GTYRAC	2 cut(s)	352, 361
HindII	GTYRAC	2 cut(s)	352, 361
HinfI	GANTC	3 cut(s)	15, 348, 365
HphI	GGTGA	4 cut(s)	13, 127, 271, 868
Hpy166II	GTNNAC	4 cut(s)	28, 352, 361, 682
Hpy188I	TCNGA	4 cut(s)	244, 347, 370, 934
Hpy188III	TCNNGA	4 cut(s)	376, 496, 765, 775
Hpy8I	GTNNAC	4 cut(s)	28, 352, 361, 682
HpyAV	CCTTC	1 cut(s)	473
HpyCH4III	ACNGT	4 cut(s)	25, 224, 273, 382
HpyCH4IV	ACGT	4 cut(s)	129, 357, 608, 909
HpyCH4V	TGCA	4 cut(s)	649, 682, 733, 814
HpyF3I	CTNAG	2 cut(s)	896, 933
HpySE526I	ACGT	4 cut(s)	129, 357, 608, 909
Hsp92I	GRCGYC	8 cut(s)	39, 117, 129, 171, 228, 483, 629, 707
KasI	GGCGCC	4 cut(s)	38, 170, 482, 628
Kpn2I	TCCGGA	1 cut(s)	495
KroI	GCCGGC	4 cut(s)	167, 512, 709, 787
KroNI	GCCGGC	4 cut(s)	169, 514, 711, 789
KspI	CCGCGG	1 cut(s)	112
Kzo9I	GATC	4 cut(s)	264, 330, 492, 621
LmnI	GCTCC	2 cut(s)	111, 784
Lsp1109I	GCAGC	3 cut(s)	69, 428, 657
LweI	GCATC	4 cut(s)	162, 315, 480, 720
MaeII	ACGT	4 cut(s)	129, 357, 608, 909
MaeIII	GTNAC	5 cut(s)	19, 133, 277, 833, 899
MalI	GATC	4 cut(s)	266, 332, 494, 623
MboI	GATC	4 cut(s)	264, 330, 492, 621
MboII	GAAGA	2 cut(s)	595, 631
MflI	RGATCY	1 cut(s)	330
MhlI	GDGCHC	1 cut(s)	684
MlsI	TGGCCA	1 cut(s)	296
MluNI	TGGCCA	1 cut(s)	296
Mly113I	GGCGCC	4 cut(s)	39, 171, 483, 629
MlyI	GAGTC	3 cut(s)	24, 357, 374
MmeI	TCCRAC	1 cut(s)	267
Mox20I	TGGCCA	1 cut(s)	296
MreI	CGCCGGCG	1 cut(s)	709
MroI	TCCGGA	1 cut(s)	495
MroNI	GCCGGC	4 cut(s)	167, 512, 709, 787
MscI	TGGCCA	1 cut(s)	296
MseI	TTAA	1 cut(s)	891
MslI	CAYNNNNRTG	2 cut(s)	644, 831
Msp20I	TGGCCA	1 cut(s)	296
MspA1I	CMGCKG	2 cut(s)	12, 111
MspR9I	CCNGG	5 cut(s)	146, 422, 476, 802, 839
MvaI	CCWGG	3 cut(s)	146, 422, 802
MvnI	CGCG	6 cut(s)	111, 198, 216, 626, 719, 793
NaeI	GCCGGC	4 cut(s)	169, 514, 711, 789
NarI	GGCGCC	4 cut(s)	39, 171, 483, 629
NciI	CCSGG	2 cut(s)	476, 839
NcoI	CCATGG	1 cut(s)	879
NdeII	GATC	4 cut(s)	264, 330, 492, 621
NgoMIV	GCCGGC	4 cut(s)	167, 512, 709, 787
NlaIV	GGNNCC	7 cut(s)	40, 172, 426, 484, 517, 630, 786
NmeAIII	GCCGAG	3 cut(s)	184, 346, 432
NmuCI	GTSAC	5 cut(s)	19, 133, 277, 833, 899
NspI	RCATGY	2 cut(s)	241, 548
PaeR7I	CTCGAG	2 cut(s)	191, 335
PciI	ACATGT	1 cut(s)	544
PcsI	WCGNNNNNNNCGW	2 cut(s)	357, 390
PdiI	GCCGGC	4 cut(s)	169, 514, 711, 789
Pfl23II	CGTACG	1 cut(s)	633
PflFI	GACNNNGTC	4 cut(s)	131, 356, 599, 641
PfoI	TCCNGGA	1 cut(s)	474
PleI	GAGTC	3 cut(s)	23, 356, 373
PluTI	GGCGCC	4 cut(s)	42, 174, 486, 632
PpsI	GAGTC	3 cut(s)	23, 356, 373
PpuMI	RGGWCCY	2 cut(s)	373, 424
PscI	ACATGT	1 cut(s)	544
PshBI	ATTAAT	1 cut(s)	891
Psp5II	RGGWCCY	2 cut(s)	373, 424
Psp6I	CCWGG	3 cut(s)	144, 420, 800
PspGI	CCWGG	3 cut(s)	144, 420, 800
PspLI	CGTACG	1 cut(s)	633
PspN4I	GGNNCC	7 cut(s)	40, 172, 426, 484, 517, 630, 786
PspPPI	RGGWCCY	2 cut(s)	373, 424
PspXI	VCTCGAGB	2 cut(s)	191, 335
PsuI	RGATCY	1 cut(s)	330
PsyI	GACNNNGTC	4 cut(s)	131, 356, 599, 641
RsaI	GTAC	2 cut(s)	29, 635
RsaNI	GTAC	2 cut(s)	28, 634
RseI	CAYNNNNRTG	2 cut(s)	644, 831
Rsr2I	CGGWCCG	1 cut(s)	273
RsrII	CGGWCCG	1 cut(s)	273
SacII	CCGCGG	1 cut(s)	112
SalI	GTCGAC	2 cut(s)	350, 359
SaqAI	TTAA	1 cut(s)	891
Sau3AI	GATC	4 cut(s)	264, 330, 492, 621
SchI	GAGTC	3 cut(s)	24, 357, 374
ScrFI	CCNGG	5 cut(s)	146, 422, 476, 802, 839
SduI	GDGCHC	1 cut(s)	684
SfaNI	GCATC	4 cut(s)	162, 315, 480, 720
SfoI	GGCGCC	4 cut(s)	40, 172, 484, 630
Sfr274I	CTCGAG	2 cut(s)	191, 335
Sfr303I	CCGCGG	1 cut(s)	112
SgrAI	CRCCGGYG	1 cut(s)	709
SgrBI	CCGCGG	1 cut(s)	112
SgrDI	CGTCGACG	1 cut(s)	359
SinI	GGWCC	5 cut(s)	273, 373, 424, 498, 568
SlaI	CTCGAG	2 cut(s)	191, 335
SmiMI	CAYNNNNRTG	2 cut(s)	644, 831
SmlI	CTYRAG	2 cut(s)	191, 335
SmoI	CTYRAG	2 cut(s)	191, 335
SspDI	GGCGCC	4 cut(s)	38, 170, 482, 628
StyD4I	CCNGG	5 cut(s)	144, 420, 474, 800, 837
StyI	CCWWGG	1 cut(s)	879
TaaI	ACNGT	4 cut(s)	25, 224, 273, 382
TaiI	ACGT	4 cut(s)	132, 360, 611, 912
TaqI	TCGA	5 cut(s)	192, 336, 351, 360, 531
TaqII	GACCGA	1 cut(s)	544
Tru1I	TTAA	1 cut(s)	891
Tru9I	TTAA	1 cut(s)	891
TscAI	CASTG	2 cut(s)	543, 904
TseFI	GTSAC	5 cut(s)	19, 133, 277, 833, 899
TseI	GCWGC	3 cut(s)	57, 441, 670
Tsp45I	GTSAC	5 cut(s)	19, 133, 277, 833, 899
TspGWI	ACGGA	2 cut(s)	265, 560
TspRI	CASTG	2 cut(s)	543, 904
Tth111I	GACNNNGTC	4 cut(s)	131, 356, 599, 641
VneI	GTGCAC	1 cut(s)	680
VpaK11BI	GGWCC	5 cut(s)	273, 373, 424, 498, 568
VspI	ATTAAT	1 cut(s)	891
XagI	CCTNNNNNAGG	1 cut(s)	455
XceI	RCATGY	2 cut(s)	241, 548
XcmI	CCANNNNNNNNNTGG	1 cut(s)	289
XhoI	CTCGAG	2 cut(s)	191, 335
XmiI	GTMKAC	2 cut(s)	351, 360
ZraI	GACGTC	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.