FvH4_3g38650

Belongs to the PdxS SNZ family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
32940854 .. 32942667
1814 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g38650.t1

Sequence Viewer

Length: 939 bp
ATGGCCGACAGCGGAGTCGTCACCGTGTACGGAAAGGGCGCCATCTGCGAGACCTCCAGCACCAAAAAGTCCTCCTACCCCGTCAAAGTTGGCCTCGCCCAAATGCTCCGCGGCGGCGTCATCATGGACGTCGTCACCCCCGCCCAGGCTCGCATCGCCGAGGAGGCCGGCGCCTGCGCGGTCATGGCCCTCGAGCGCGTCCCCGCCGACATCCGCGCCCACGGCGGCGTTGCTCGCATGTCCGACCCTCAACTCATTAAAGAGATCAAACGCGCCGTCACCATCCCCGTCATGGCCAAGTGCCGCATCGGCCACTTCGCCGAGGCTCAGATCCTCGAGGCCATCGGAGTGGACTACGTCGACGAGTCCGAGGTCCTCACCGTCGCCGACGACGACAATCACATCAACAAACACAACTTCCAGGTCCCCTTCGTCTGCGGCTGCCGCAACCTCGGCGAGGCGCTCCGCCGCATAAGGGAAGGCGCCGCCATGATCCGGACCAAAGGTGAAGCTGGAACCGGGAACATAGTCGAGGCAGTTAGACATGTTCGGTCGGTAATGGGGGAGGTCCGTGTTTTGCGGAACATGGACGACGACGAGGTCTTCGGGTTTGCCAAGAAGATCGCGGCGCCGTACGACATGGTCATGCAGACGAAGCAGATGGGGAGGCTGCCGGTGGTGCACTTCGCCGCCGGAGGGGTGGCGACGCCGGCGGACGCGGCGATGATGATGCAGTTGGGGTGTGATGGGGTGTTTGTGGGGTCGGGAGTTTTCAAGAGTGGGGAGCCGGCGCGGCGGGCGAGGGCGATAGTGCAGGCGGCGACGCATTATAGTGACCCGGAGGTGCTGGCGGAGGTGAGCTGCGGGTTGGGGGAGGCAATGGTGGGGATTAATCTCAGTGACAACAATGTGGAGAGGTATGCTTACAGGTCTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

313

Amino Acids

33.37

Weight (kDa)

6.2

Isoelectric Point (pI)

37.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SOR_SNZ PF01680 28 - 231 2.8e-110 SOR/SNZ family
ThiG PF05690 207 - 273 1.3e-06 Thiazole biosynthesis protein ThiG
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 14, 599
AatII GACGTC 1 cut(s) 132
AbsI CCTCGAGG 1 cut(s) 335
AccB1I GGYRCC 4 cut(s) 38, 170, 482, 628
AccI GTMKAC 1 cut(s) 360
AccII CGCG 8 cut(s) 111, 179, 198, 216, 273, 626, 719, 793
AccIII TCCGGA 1 cut(s) 495
AclWI GGATC 2 cut(s) 325, 487
AcoI YGGCCR 3 cut(s) 3, 294, 310
AcyI GRCGYC 7 cut(s) 39, 117, 129, 171, 483, 629, 707
AfaI GTAC 2 cut(s) 29, 635
AfiI CCNNNNNNNGG 6 cut(s) 145, 292, 457, 475, 495, 696
AflIII ACRYGT 1 cut(s) 544
AgsI TTSAA 1 cut(s) 775
AjnI CCWGG 2 cut(s) 144, 420
AluBI AGCT 2 cut(s) 512, 861
AluI AGCT 2 cut(s) 512, 861
Alw21I GWGCWC 1 cut(s) 684
Alw26I GTCTC 1 cut(s) 44
Alw44I GTGCAC 1 cut(s) 680
AlwI GGATC 2 cut(s) 325, 487
Ama87I CYCGRG 2 cut(s) 191, 335
Aor13HI TCCGGA 1 cut(s) 495
AoxI GGCC 7 cut(s) 3, 91, 165, 186, 294, 310, 339
ApaLI GTGCAC 1 cut(s) 680
ApeKI GCWGC 3 cut(s) 441, 670, 861
ArsI GACNNNNNNTTYG 4 cut(s) 261, 293, 587, 619
AseI ATTAAT 1 cut(s) 891
AspS9I GGNCC 5 cut(s) 187, 373, 424, 498, 568
AsuC2I CCSGG 2 cut(s) 520, 839
AsuHPI GGTGA 6 cut(s) 13, 127, 271, 370, 518, 868
AvaI CYCGRG 2 cut(s) 191, 335
AvaII GGWCC 4 cut(s) 373, 424, 498, 568
BaeGI GKGCMC 1 cut(s) 684
BalI TGGCCA 1 cut(s) 296
BanI GGYRCC 4 cut(s) 38, 170, 482, 628
BbsI GAAGAC 1 cut(s) 595
Bbv12I GWGCWC 1 cut(s) 684
BbvI GCAGC 3 cut(s) 428, 657, 848
BccI CCATC 5 cut(s) 50, 290, 350, 655, 740
BceAI ACGGC 3 cut(s) 238, 260, 616
BcgI CGANNNNNNTGC 2 cut(s) 712, 746
BciT130I CCWGG 2 cut(s) 146, 422
BcnI CCSGG 2 cut(s) 520, 839
BcoDI GTCTC 1 cut(s) 44
BfoI RGCGCY 5 cut(s) 42, 174, 464, 486, 632
BglI GCCNNNNNGGC 3 cut(s) 164, 309, 793
Bme1390I CCNGG 4 cut(s) 146, 422, 520, 839
Bme18I GGWCC 4 cut(s) 373, 424, 498, 568
BmeT110I CYCGRG 2 cut(s) 191, 335
BmgT120I GGNCC 5 cut(s) 187, 373, 424, 498, 568
BmiI GGNNCC 7 cut(s) 40, 172, 426, 484, 517, 630, 786
BmrFI CCNGG 4 cut(s) 146, 422, 520, 839
BmsI GCATC 3 cut(s) 162, 315, 720
BpiI GAAGAC 1 cut(s) 595
BpmI CTGGAG 1 cut(s) 40
BpuMI CCSGG 2 cut(s) 520, 839
BsaHI GRCGYC 7 cut(s) 39, 117, 129, 171, 483, 629, 707
BsaI GGTCTC 1 cut(s) 44
BsaJI CCNNGG 7 cut(s) 109, 144, 159, 220, 321, 369, 451
BsaWI WCCGGW 1 cut(s) 495
Bsc4I CCNNNNNNNGG 6 cut(s) 145, 292, 457, 475, 495, 696
Bse118I RCCGGY 4 cut(s) 167, 673, 709, 787
Bse3DI GCAATG 1 cut(s) 885
BseAI TCCGGA 1 cut(s) 495
BseBI CCWGG 2 cut(s) 146, 422
BseDI CCNNGG 7 cut(s) 109, 144, 159, 220, 321, 369, 451
BseGI GGATG 2 cut(s) 210, 282
BseLI CCNNNNNNNGG 6 cut(s) 145, 292, 457, 475, 495, 696
BseMI GCAATG 1 cut(s) 885
BseMII CTCAG 3 cut(s) 341, 910, 924
BseRI GAGGAG 1 cut(s) 176
BseSI GKGCMC 1 cut(s) 684
BseXI GCAGC 3 cut(s) 428, 657, 848
BsgI GTGCAG 1 cut(s) 833
Bsh1236I CGCG 8 cut(s) 111, 179, 198, 216, 273, 626, 719, 793
Bsh1285I CGRYCG 1 cut(s) 554
BshFI GGCC 7 cut(s) 5, 93, 167, 188, 296, 312, 341
BshNI GGYRCC 4 cut(s) 38, 170, 482, 628
BsiEI CGRYCG 1 cut(s) 554
BsiHKAI GWGCWC 1 cut(s) 684
BsiHKCI CYCGRG 2 cut(s) 191, 335
BsiSI CCGG 8 cut(s) 168, 496, 519, 674, 693, 710, 788, 839
BsiWI CGTACG 1 cut(s) 633
BslFI GGGAC 2 cut(s) 185, 410
BslI CCNNNNNNNGG 6 cut(s) 145, 292, 457, 475, 495, 696
BsmAI GTCTC 1 cut(s) 44
BsmFI GGGAC 2 cut(s) 185, 410
BsnI GGCC 7 cut(s) 5, 93, 167, 188, 296, 312, 341
Bso31I GGTCTC 1 cut(s) 44
BsoBI CYCGRG 2 cut(s) 191, 335
Bsp1286I GDGCHC 1 cut(s) 684
Bsp13I TCCGGA 1 cut(s) 495
Bsp143I GATC 4 cut(s) 264, 330, 492, 621
BspANI GGCC 7 cut(s) 5, 93, 167, 188, 296, 312, 341
BspCNI CTCAG 3 cut(s) 340, 909, 925
BspEI TCCGGA 1 cut(s) 495
BspFNI CGCG 8 cut(s) 111, 179, 198, 216, 273, 626, 719, 793
BspLI GGNNCC 7 cut(s) 40, 172, 426, 484, 517, 630, 786
BspPI GGATC 2 cut(s) 325, 487
BspT107I GGYRCC 4 cut(s) 38, 170, 482, 628
BspTNI GGTCTC 1 cut(s) 44
BsrDI GCAATG 1 cut(s) 885
BsrFI RCCGGY 4 cut(s) 167, 673, 709, 787
BssAI RCCGGY 4 cut(s) 167, 673, 709, 787
BssECI CCNNGG 7 cut(s) 109, 144, 159, 220, 321, 369, 451
BssMI GATC 4 cut(s) 264, 330, 492, 621
BssNI GRCGYC 7 cut(s) 39, 117, 129, 171, 483, 629, 707
Bst2UI CCWGG 2 cut(s) 146, 422
Bst4CI ACNGT 2 cut(s) 25, 382
BstACI GRCGYC 7 cut(s) 39, 117, 129, 171, 483, 629, 707
BstC8I GCNNGC 9 cut(s) 151, 169, 175, 235, 711, 789, 798, 816, 849
BstDEI CTNAG 3 cut(s) 327, 896, 933
BstDSI CCRYGG 2 cut(s) 109, 220
BstENI CCTNNNNNAGG 1 cut(s) 455
BstF5I GGATG 2 cut(s) 210, 282
BstFNI CGCG 8 cut(s) 111, 179, 198, 216, 273, 626, 719, 793
BstH2I RGCGCY 5 cut(s) 42, 174, 464, 486, 632
BstKTI GATC 4 cut(s) 267, 333, 495, 624
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 4 cut(s) 264, 330, 492, 621
BstMCI CGRYCG 1 cut(s) 554
BstNI CCWGG 2 cut(s) 146, 422
BstNSI RCATGY 2 cut(s) 241, 548
BstSCI CCNGG 4 cut(s) 144, 420, 518, 837
BstSLI GKGCMC 1 cut(s) 684
BstUI CGCG 8 cut(s) 111, 179, 198, 216, 273, 626, 719, 793
BstV1I GCAGC 3 cut(s) 428, 657, 848
BstV2I GAAGAC 1 cut(s) 595
BstX2I RGATCY 1 cut(s) 330
BstXI CCANNNNNNTGG 1 cut(s) 349
BstYI RGATCY 1 cut(s) 330
BsuRI GGCC 7 cut(s) 5, 93, 167, 188, 296, 312, 341
BtgI CCRYGG 2 cut(s) 109, 220
BtgZI GCGATG 2 cut(s) 139, 737
BtsCI GGATG 2 cut(s) 210, 282
BtsIMutI CAGTG 1 cut(s) 904
Cac8I GCNNGC 9 cut(s) 151, 169, 175, 235, 711, 789, 798, 816, 849
Cfr10I RCCGGY 4 cut(s) 167, 673, 709, 787
Cfr13I GGNCC 5 cut(s) 187, 373, 424, 498, 568
Cfr42I CCGCGG 1 cut(s) 112
CseI GACGC 5 cut(s) 106, 187, 715, 725, 832
Csp6I GTAC 2 cut(s) 28, 634
CviAII CATG 9 cut(s) 124, 184, 238, 292, 490, 545, 586, 640, 646
CviQI GTAC 2 cut(s) 28, 634
DdeI CTNAG 3 cut(s) 327, 896, 933
DinI GGCGCC 4 cut(s) 40, 172, 484, 630
DpnI GATC 4 cut(s) 266, 332, 494, 623
DpnII GATC 4 cut(s) 264, 330, 492, 621
DrdI GACNNNNNNGTC 2 cut(s) 14, 599
DseDI GACNNNNNNGTC 2 cut(s) 14, 599
EaeI YGGCCR 3 cut(s) 3, 294, 310
EciI GGCGGA 3 cut(s) 455, 728, 866
Eco31I GGTCTC 1 cut(s) 44
Eco47I GGWCC 4 cut(s) 373, 424, 498, 568
Eco88I CYCGRG 2 cut(s) 191, 335
EcoNI CCTNNNNNAGG 1 cut(s) 455
EcoO109I RGGNCCY 2 cut(s) 373, 424
EcoRII CCWGG 2 cut(s) 144, 420
EgeI GGCGCC 4 cut(s) 40, 172, 484, 630
EheI GGCGCC 4 cut(s) 40, 172, 484, 630
FaeI CATG 9 cut(s) 127, 187, 241, 295, 493, 548, 589, 643, 649
FaqI GGGAC 2 cut(s) 185, 410
FatI CATG 9 cut(s) 123, 183, 237, 291, 489, 544, 585, 639, 645
FauI CCCGC 4 cut(s) 148, 211, 789, 857
FblI GTMKAC 1 cut(s) 360
FokI GGATG 2 cut(s) 197, 269
GsuI CTGGAG 1 cut(s) 40
HaeII RGCGCY 5 cut(s) 42, 174, 464, 486, 632
HaeIII GGCC 7 cut(s) 5, 93, 167, 188, 296, 312, 341
HapII CCGG 8 cut(s) 168, 496, 519, 674, 693, 710, 788, 839
HgaI GACGC 5 cut(s) 106, 187, 715, 725, 832
Hin1I GRCGYC 7 cut(s) 39, 117, 129, 171, 483, 629, 707
Hin1II CATG 9 cut(s) 127, 187, 241, 295, 493, 548, 589, 643, 649
HincII GTYRAC 1 cut(s) 361
HindII GTYRAC 1 cut(s) 361
HinfI GANTC 2 cut(s) 15, 365
HpaII CCGG 8 cut(s) 168, 496, 519, 674, 693, 710, 788, 839
HphI GGTGA 6 cut(s) 13, 127, 271, 370, 518, 868
Hpy166II GTNNAC 4 cut(s) 28, 352, 361, 682
Hpy188I TCNGA 5 cut(s) 244, 330, 347, 370, 934
Hpy188III TCNNGA 3 cut(s) 496, 765, 775
Hpy8I GTNNAC 4 cut(s) 28, 352, 361, 682
HpyAV CCTTC 2 cut(s) 439, 473
HpyCH4III ACNGT 2 cut(s) 25, 382
HpyCH4IV ACGT 2 cut(s) 129, 357
HpyCH4V TGCA 4 cut(s) 649, 682, 733, 814
HpyF3I CTNAG 3 cut(s) 327, 896, 933
HpySE526I ACGT 2 cut(s) 129, 357
Hsp92I GRCGYC 7 cut(s) 39, 117, 129, 171, 483, 629, 707
Hsp92II CATG 9 cut(s) 127, 187, 241, 295, 493, 548, 589, 643, 649
KasI GGCGCC 4 cut(s) 38, 170, 482, 628
Kpn2I TCCGGA 1 cut(s) 495
KroI GCCGGC 3 cut(s) 167, 709, 787
KroNI GCCGGC 3 cut(s) 169, 711, 789
KspI CCGCGG 1 cut(s) 112
Kzo9I GATC 4 cut(s) 264, 330, 492, 621
LmnI GCTCC 3 cut(s) 111, 468, 784
Lsp1109I GCAGC 3 cut(s) 428, 657, 848
LweI GCATC 3 cut(s) 162, 315, 720
MaeII ACGT 2 cut(s) 129, 357
MaeIII GTNAC 5 cut(s) 19, 133, 277, 833, 899
MalI GATC 4 cut(s) 266, 332, 494, 623
MboI GATC 4 cut(s) 264, 330, 492, 621
MboII GAAGA 2 cut(s) 595, 631
MflI RGATCY 1 cut(s) 330
MhlI GDGCHC 1 cut(s) 684
MlsI TGGCCA 1 cut(s) 296
MluNI TGGCCA 1 cut(s) 296
Mly113I GGCGCC 4 cut(s) 39, 171, 483, 629
MlyI GAGTC 2 cut(s) 24, 374
MmeI TCCRAC 1 cut(s) 267
Mox20I TGGCCA 1 cut(s) 296
MreI CGCCGGCG 1 cut(s) 709
MroI TCCGGA 1 cut(s) 495
MroNI GCCGGC 3 cut(s) 167, 709, 787
MscI TGGCCA 1 cut(s) 296
MseI TTAA 2 cut(s) 258, 891
MslI CAYNNNNRTG 3 cut(s) 347, 644, 831
Msp20I TGGCCA 1 cut(s) 296
MspA1I CMGCKG 2 cut(s) 12, 111
MspI CCGG 8 cut(s) 168, 496, 519, 674, 693, 710, 788, 839
MspR9I CCNGG 4 cut(s) 146, 422, 520, 839
MvaI CCWGG 2 cut(s) 146, 422
MvnI CGCG 8 cut(s) 111, 179, 198, 216, 273, 626, 719, 793
NaeI GCCGGC 3 cut(s) 169, 711, 789
NarI GGCGCC 4 cut(s) 39, 171, 483, 629
NciI CCSGG 2 cut(s) 520, 839
NdeII GATC 4 cut(s) 264, 330, 492, 621
NgoMIV GCCGGC 3 cut(s) 167, 709, 787
NlaIII CATG 9 cut(s) 127, 187, 241, 295, 493, 548, 589, 643, 649
NlaIV GGNNCC 7 cut(s) 40, 172, 426, 484, 517, 630, 786
NmeAIII GCCGAG 3 cut(s) 184, 346, 432
NmuCI GTSAC 5 cut(s) 19, 133, 277, 833, 899
NspI RCATGY 2 cut(s) 241, 548
PaeR7I CTCGAG 2 cut(s) 191, 335
PciI ACATGT 1 cut(s) 544
PcsI WCGNNNNNNNCGW 2 cut(s) 366, 390
PdiI GCCGGC 3 cut(s) 169, 711, 789
Pfl23II CGTACG 1 cut(s) 633
PflFI GACNNNGTC 4 cut(s) 131, 356, 599, 641
PleI GAGTC 2 cut(s) 23, 373
PluTI GGCGCC 4 cut(s) 42, 174, 486, 632
PpsI GAGTC 2 cut(s) 23, 373
PpuMI RGGWCCY 2 cut(s) 373, 424
PscI ACATGT 1 cut(s) 544
PshBI ATTAAT 1 cut(s) 891
Psp5II RGGWCCY 2 cut(s) 373, 424
Psp6I CCWGG 2 cut(s) 144, 420
PspGI CCWGG 2 cut(s) 144, 420
PspLI CGTACG 1 cut(s) 633
PspN4I GGNNCC 7 cut(s) 40, 172, 426, 484, 517, 630, 786
PspPI GGNCC 5 cut(s) 187, 373, 424, 498, 568
PspPPI RGGWCCY 2 cut(s) 373, 424
PspXI VCTCGAGB 2 cut(s) 191, 335
PsuI RGATCY 1 cut(s) 330
PsyI GACNNNGTC 4 cut(s) 131, 356, 599, 641
RsaI GTAC 2 cut(s) 29, 635
RsaNI GTAC 2 cut(s) 28, 634
RseI CAYNNNNRTG 3 cut(s) 347, 644, 831
SacII CCGCGG 1 cut(s) 112
SalI GTCGAC 1 cut(s) 359
SaqAI TTAA 2 cut(s) 258, 891
Sau3AI GATC 4 cut(s) 264, 330, 492, 621
Sau96I GGNCC 5 cut(s) 187, 373, 424, 498, 568
SchI GAGTC 2 cut(s) 24, 374
ScrFI CCNGG 4 cut(s) 146, 422, 520, 839
SduI GDGCHC 1 cut(s) 684
SfaNI GCATC 3 cut(s) 162, 315, 720
SfoI GGCGCC 4 cut(s) 40, 172, 484, 630
Sfr274I CTCGAG 2 cut(s) 191, 335
Sfr303I CCGCGG 1 cut(s) 112
SgrAI CRCCGGYG 1 cut(s) 709
SgrBI CCGCGG 1 cut(s) 112
SgrDI CGTCGACG 1 cut(s) 359
SinI GGWCC 4 cut(s) 373, 424, 498, 568
SlaI CTCGAG 2 cut(s) 191, 335
SmiMI CAYNNNNRTG 3 cut(s) 347, 644, 831
SmlI CTYRAG 2 cut(s) 191, 335
SmoI CTYRAG 2 cut(s) 191, 335
SspDI GGCGCC 4 cut(s) 38, 170, 482, 628
StyD4I CCNGG 4 cut(s) 144, 420, 518, 837
TaaI ACNGT 2 cut(s) 25, 382
TaiI ACGT 2 cut(s) 132, 360
TaqI TCGA 4 cut(s) 192, 336, 360, 531
TaqII GACCGA 1 cut(s) 540
Tru1I TTAA 2 cut(s) 258, 891
Tru9I TTAA 2 cut(s) 258, 891
TscAI CASTG 1 cut(s) 904
TseFI GTSAC 5 cut(s) 19, 133, 277, 833, 899
TseI GCWGC 3 cut(s) 441, 670, 861
Tsp45I GTSAC 5 cut(s) 19, 133, 277, 833, 899
TspGWI ACGGA 2 cut(s) 45, 560
TspRI CASTG 1 cut(s) 904
Tth111I GACNNNGTC 4 cut(s) 131, 356, 599, 641
VneI GTGCAC 1 cut(s) 680
VpaK11BI GGWCC 4 cut(s) 373, 424, 498, 568
VspI ATTAAT 1 cut(s) 891
XagI CCTNNNNNAGG 1 cut(s) 455
XceI RCATGY 2 cut(s) 241, 548
XcmI CCANNNNNNNNNTGG 1 cut(s) 289
XhoI CTCGAG 2 cut(s) 191, 335
XmiI GTMKAC 1 cut(s) 360
ZraI GACGTC 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.