Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000766.1

Orthogroup ID

OG0003370

Physical Location & Seq

Genomic Coordinates Reverse (-)

226226 .. 227161

Gene Structure 936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000766.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

atggccggctcgggagtggtcgcagtgtacggcaacggcgccatcacagagagcagcagcaacaagtcggcgttcgcagtgaaggtgggcctggcccaaatgctccgcggcggcgtcatcatggacgtcgtgaacgccgagcaggcccggatcgccgaggaggccggggcctgcgcggtgatggcgctggagcgggtcccggctgacatccgggcccagggcggcgtggcccgcatgtccgacccgcagctcatcaaggagattaagcaggccgtcaccatacccgtcatggccaaggcccggattggccacttcgtcgaggcccagattctcgaggccatcggcgtcgattacgtcgacgagagcgaggtcctcactctcgccgacgaggataaccacataaacaagcacaacttccagattccgttcgtctgcggctgccggaacctcggcgaggcgctccggcggatccgggagggcgcggcgatgatccggaccaagggcgaggccggcaccgggaacgtcatcgaggccgtcaggcacgtccggtcggtgatgggggacattagggttttgaggaacatggacgacgacgaggtcttcacctttgcgaagaagatcgcggcgccgtacgatttggtgatgcagaccaagcagctcgggaggctgccggtggtgcacttcgccgccgggggagttgcgacgccagccgacgcggcgctgatgatgcagctggggatggatggggtttttgtcgggtcgggtgtgttcaagagcggtgacccggtgaagcggggcagggcgattgtgcaggctgtgacccattacaatgacccgaatatactcgctgatgttagctgtggattgggtgaggctatggttgggctcaacttgaatgatgccaaggtcgaaaggtttgcgaatcgttccgaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0009507 GO:0009536 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046982 GO:0046983 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00750 map00750

Pfam Domains

Protein Families

SOR_SNZ

Protein Analysis

311

Amino Acids

33.09

Weight (kDa)

5.93

Isoelectric Point (pI)

38.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38230 AT5G01410 AT5G01410
fragaria_vesca	FvH4_3g38650 FvH4_6g11420
malus_domestica	MD04G1153300.v1.1 MD11G1073500.v1.1
prunus_persica	Prupe.6G277500_v2.0.a1 Prupe.8G053100_v2.0.a1
pyrus_communis	pycom04g13870 pycom11g06100 pycom12g15860
rosa_chinensis	RchiOBHm_Chr1g0327251 RchiOBHm_Chr3g0463101 RchiOBHm_Chr5g0069681
rosa_laevigata	RLG00000024812 RLG00000036085
rosa_multiflora	Rmu_sc0000738.1_g000036 Rmu_sc0000766.1_g000039 Rmu_sc0001791.1_g000010 Rmu_sc0007688.1_g000003
rosa_roxburghii	Rroxscaffold_1G00011400 Rroxscaffold_6G00416960
rosa_rugosa	Rorug03G0061400 Rorug05G0399200
rosa_samantha	Rh2CG209300 Rh3AG119600 Rh3BG124100 Rh3CG126000 Rh3DG125100 Rh5BG265000 Rh5BG475000 Rh5CG498600 Rh5DG486500
rosa_wichuraiana	Rw3G010120 Rw5G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	596
AatII	GACGTC	1 cut(s)	129
AccB1I	GGYRCC	3 cut(s)	38, 512, 625
AccBSI	CCGCTC	2 cut(s)	193, 777
AccI	GTMKAC	1 cut(s)	357
AccII	CGCG	5 cut(s)	108, 176, 482, 623, 716
AccIII	TCCGGA	1 cut(s)	492
AclWI	GGATC	4 cut(s)	158, 463, 476, 484
AcoI	YGGCCR	3 cut(s)	3, 291, 307
AcyI	GRCGYC	6 cut(s)	39, 114, 126, 345, 626, 704
AfaI	GTAC	2 cut(s)	29, 632
AfiI	CCNNNNNNNGG	5 cut(s)	217, 300, 454, 499, 516
AgsI	TTSAA	2 cut(s)	772, 895
AjiI	CACGTC	1 cut(s)	544
AjnI	CCWGG	2 cut(s)	90, 216
AluBI	AGCT	4 cut(s)	250, 658, 733, 858
AluI	AGCT	4 cut(s)	250, 658, 733, 858
Alw21I	GWGCWC	1 cut(s)	681
Alw44I	GTGCAC	1 cut(s)	677
AlwI	GGATC	4 cut(s)	158, 463, 476, 484
Ama87I	CYCGRG	3 cut(s)	10, 332, 659
Aor13HI	TCCGGA	1 cut(s)	492
ApaI	GGGCCC	1 cut(s)	217
ApaLI	GTGCAC	1 cut(s)	677
ApeKI	GCWGC	7 cut(s)	54, 57, 247, 438, 655, 667, 730
AspLEI	GCGC	7 cut(s)	41, 176, 187, 460, 482, 628, 721
AsuC2I	CCSGG	9 cut(s)	148, 166, 200, 212, 301, 473, 517, 691, 785
AsuHPI	GGTGA	8 cut(s)	190, 268, 565, 595, 652, 791, 799, 881
AvaI	CYCGRG	3 cut(s)	10, 332, 659
AvaII	GGWCC	3 cut(s)	196, 370, 495
BaeGI	GKGCMC	2 cut(s)	217, 681
BalI	TGGCCA	2 cut(s)	293, 309
BamHI	GGATCC	1 cut(s)	468
BanI	GGYRCC	3 cut(s)	38, 512, 625
BanII	GRGCYC	2 cut(s)	217, 888
BbsI	GAAGAC	1 cut(s)	592
Bbv12I	GWGCWC	1 cut(s)	681
BbvI	GCAGC	7 cut(s)	66, 69, 259, 425, 654, 667, 742
BccI	CCATC	6 cut(s)	50, 175, 347, 550, 733, 737
BceAI	ACGGC	5 cut(s)	46, 52, 257, 518, 613
BcgI	CGANNNNNNTGC	2 cut(s)	899, 933
BciT130I	CCWGG	2 cut(s)	92, 218
BcnI	CCSGG	9 cut(s)	148, 166, 200, 212, 301, 473, 517, 691, 785
BfoI	RGCGCY	5 cut(s)	42, 188, 461, 629, 722
BglI	GCCNNNNNGGC	3 cut(s)	143, 161, 716
Bme18I	GGWCC	3 cut(s)	196, 370, 495
BmeT110I	CYCGRG	3 cut(s)	10, 332, 659
BmgBI	CACGTC	1 cut(s)	544
BmiI	GGNNCC	9 cut(s)	40, 169, 197, 198, 215, 446, 470, 514, 627
BmsI	GCATC	3 cut(s)	633, 717, 889
BpiI	GAAGAC	1 cut(s)	592
BpmI	CTGGAG	1 cut(s)	209
BpuMI	CCSGG	9 cut(s)	148, 166, 200, 212, 301, 473, 517, 691, 785
BsaHI	GRCGYC	6 cut(s)	39, 114, 126, 345, 626, 704
BsaWI	WCCGGW	2 cut(s)	492, 546
Bsc4I	CCNNNNNNNGG	5 cut(s)	217, 300, 454, 499, 516
Bse118I	RCCGGY	3 cut(s)	5, 509, 670
BseAI	TCCGGA	1 cut(s)	492
BseBI	CCWGG	2 cut(s)	92, 218
BseGI	GGATG	3 cut(s)	207, 744, 748
BseLI	CCNNNNNNNGG	5 cut(s)	217, 300, 454, 499, 516
BseRI	GAGGAG	1 cut(s)	173
BseSI	GKGCMC	2 cut(s)	217, 681
BseXI	GCAGC	7 cut(s)	66, 69, 259, 425, 654, 667, 742
BseYI	CCCAGC	1 cut(s)	733
BsgI	GTGCAG	1 cut(s)	830
Bsh1236I	CGCG	5 cut(s)	108, 176, 482, 623, 716
Bsh1285I	CGRYCG	1 cut(s)	551
BshNI	GGYRCC	3 cut(s)	38, 512, 625
BsiEI	CGRYCG	1 cut(s)	551
BsiHKAI	GWGCWC	1 cut(s)	681
BsiHKCI	CYCGRG	3 cut(s)	10, 332, 659
BsiWI	CGTACG	1 cut(s)	630
BslFI	GGGAC	2 cut(s)	182, 575
BslI	CCNNNNNNNGG	5 cut(s)	217, 300, 454, 499, 516
BsmFI	GGGAC	2 cut(s)	182, 575
BsoBI	CYCGRG	3 cut(s)	10, 332, 659
Bsp120I	GGGCCC	1 cut(s)	213
Bsp1286I	GDGCHC	3 cut(s)	217, 681, 888
Bsp13I	TCCGGA	1 cut(s)	492
Bsp143I	GATC	4 cut(s)	150, 468, 489, 618
BspEI	TCCGGA	1 cut(s)	492
BspFNI	CGCG	5 cut(s)	108, 176, 482, 623, 716
BspLI	GGNNCC	9 cut(s)	40, 169, 197, 198, 215, 446, 470, 514, 627
BspPI	GGATC	4 cut(s)	158, 463, 476, 484
BspT107I	GGYRCC	3 cut(s)	38, 512, 625
BsrBI	CCGCTC	2 cut(s)	193, 777
BsrFI	RCCGGY	3 cut(s)	5, 509, 670
BssAI	RCCGGY	3 cut(s)	5, 509, 670
BssMI	GATC	4 cut(s)	150, 468, 489, 618
BssNI	GRCGYC	6 cut(s)	39, 114, 126, 345, 626, 704
BssT1I	CCWWGG	3 cut(s)	294, 498, 903
Bst2UI	CCWGG	2 cut(s)	92, 218
BstACI	GRCGYC	6 cut(s)	39, 114, 126, 345, 626, 704
BstC8I	GCNNGC	8 cut(s)	7, 144, 172, 232, 270, 511, 708, 813
BstDSI	CCRYGG	1 cut(s)	106
BstEII	GGTNACC	1 cut(s)	779
BstENI	CCTNNNNNAGG	1 cut(s)	452
BstF5I	GGATG	3 cut(s)	207, 744, 748
BstFNI	CGCG	5 cut(s)	108, 176, 482, 623, 716
BstH2I	RGCGCY	5 cut(s)	42, 188, 461, 629, 722
BstHHI	GCGC	7 cut(s)	41, 176, 187, 460, 482, 628, 721
BstKTI	GATC	4 cut(s)	153, 471, 492, 621
BstMBI	GATC	4 cut(s)	150, 468, 489, 618
BstMCI	CGRYCG	1 cut(s)	551
BstNI	CCWGG	2 cut(s)	92, 218
BstNSI	RCATGY	1 cut(s)	238
BstPI	GGTNACC	1 cut(s)	779
BstSLI	GKGCMC	2 cut(s)	217, 681
BstUI	CGCG	5 cut(s)	108, 176, 482, 623, 716
BstV1I	GCAGC	7 cut(s)	66, 69, 259, 425, 654, 667, 742
BstV2I	GAAGAC	1 cut(s)	592
BstX2I	RGATCY	1 cut(s)	468
BstYI	RGATCY	1 cut(s)	468
BtgI	CCRYGG	1 cut(s)	106
BtgZI	GCGATG	1 cut(s)	500
BtrI	CACGTC	1 cut(s)	544
BtsCI	GGATG	3 cut(s)	207, 744, 748
BtsI	GCAGTG	2 cut(s)	30, 84
BtsIMutI	CAGTG	2 cut(s)	30, 84
Cac8I	GCNNGC	8 cut(s)	7, 144, 172, 232, 270, 511, 708, 813
CfoI	GCGC	7 cut(s)	41, 176, 187, 460, 482, 628, 721
Cfr10I	RCCGGY	3 cut(s)	5, 509, 670
Cfr42I	CCGCGG	1 cut(s)	109
CseI	GACGC	4 cut(s)	103, 334, 712, 722
Csp6I	GTAC	2 cut(s)	28, 631
CviAII	CATG	4 cut(s)	121, 235, 289, 583
CviQI	GTAC	2 cut(s)	28, 631
DinI	GGCGCC	2 cut(s)	40, 627
DpnI	GATC	4 cut(s)	152, 470, 491, 620
DpnII	GATC	4 cut(s)	150, 468, 489, 618
DrdI	GACNNNNNNGTC	1 cut(s)	596
DseDI	GACNNNNNNGTC	1 cut(s)	596
EaeI	YGGCCR	3 cut(s)	3, 291, 307
EciI	GGCGGA	1 cut(s)	481
Eco130I	CCWWGG	3 cut(s)	294, 498, 903
Eco24I	GRGCYC	2 cut(s)	217, 888
Eco47I	GGWCC	3 cut(s)	196, 370, 495
Eco88I	CYCGRG	3 cut(s)	10, 332, 659
Eco91I	GGTNACC	1 cut(s)	779
EcoNI	CCTNNNNNAGG	1 cut(s)	452
EcoO109I	RGGNCCY	3 cut(s)	168, 196, 370
EcoO65I	GGTNACC	1 cut(s)	779
EcoRII	CCWGG	2 cut(s)	90, 216
EcoT14I	CCWWGG	3 cut(s)	294, 498, 903
EcoT38I	GRGCYC	2 cut(s)	217, 888
EgeI	GGCGCC	2 cut(s)	40, 627
EheI	GGCGCC	2 cut(s)	40, 627
ErhI	CCWWGG	3 cut(s)	294, 498, 903
FaeI	CATG	4 cut(s)	124, 238, 292, 586
FaiI	YATR	8 cut(s)	122, 236, 281, 290, 401, 584, 842, 878
FalI	AAGNNNNNCTT	2 cut(s)	398, 430
FaqI	GGGAC	2 cut(s)	182, 575
FatI	CATG	4 cut(s)	120, 234, 288, 582
FauI	CCCGC	4 cut(s)	186, 239, 252, 786
FblI	GTMKAC	1 cut(s)	357
FokI	GGATG	3 cut(s)	194, 751, 755
FriOI	GRGCYC	2 cut(s)	217, 888
GlaI	GCGC	7 cut(s)	40, 175, 186, 459, 481, 627, 720
GsaI	CCCAGC	1 cut(s)	737
GsuI	CTGGAG	1 cut(s)	209
HaeII	RGCGCY	5 cut(s)	42, 188, 461, 629, 722
HgaI	GACGC	4 cut(s)	103, 334, 712, 722
HhaI	GCGC	7 cut(s)	41, 176, 187, 460, 482, 628, 721
Hin1I	GRCGYC	6 cut(s)	39, 114, 126, 345, 626, 704
Hin1II	CATG	4 cut(s)	124, 238, 292, 586
Hin6I	GCGC	7 cut(s)	39, 174, 185, 458, 480, 626, 719
HinP1I	GCGC	7 cut(s)	39, 174, 185, 458, 480, 626, 719
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HinfI	GANTC	3 cut(s)	328, 421, 922
HphI	GGTGA	8 cut(s)	190, 268, 565, 595, 652, 791, 799, 881
Hpy166II	GTNNAC	4 cut(s)	28, 133, 358, 679
Hpy188I	TCNGA	2 cut(s)	241, 931
Hpy188III	TCNNGA	7 cut(s)	12, 130, 332, 418, 493, 661, 772
Hpy8I	GTNNAC	4 cut(s)	28, 133, 358, 679
HpyAV	CCTTC	1 cut(s)	76
HpyCH4IV	ACGT	4 cut(s)	126, 354, 522, 543
HpyCH4V	TGCA	4 cut(s)	646, 679, 730, 811
HpySE526I	ACGT	4 cut(s)	126, 354, 522, 543
Hsp92I	GRCGYC	6 cut(s)	39, 114, 126, 345, 626, 704
Hsp92II	CATG	4 cut(s)	124, 238, 292, 586
HspAI	GCGC	7 cut(s)	39, 174, 185, 458, 480, 626, 719
KasI	GGCGCC	2 cut(s)	38, 625
KflI	GGGWCCC	1 cut(s)	196
Kpn2I	TCCGGA	1 cut(s)	492
KroI	GCCGGC	2 cut(s)	5, 509
KroNI	GCCGGC	2 cut(s)	7, 511
KspI	CCGCGG	1 cut(s)	109
Kzo9I	GATC	4 cut(s)	150, 468, 489, 618
LmnI	GCTCC	3 cut(s)	108, 190, 465
Lsp1109I	GCAGC	7 cut(s)	66, 69, 259, 425, 654, 667, 742
LweI	GCATC	3 cut(s)	633, 717, 889
MaeII	ACGT	4 cut(s)	126, 354, 522, 543
MaeIII	GTNAC	3 cut(s)	274, 779, 817
MalI	GATC	4 cut(s)	152, 470, 491, 620
MbiI	CCGCTC	2 cut(s)	193, 777
MboI	GATC	4 cut(s)	150, 468, 489, 618
MboII	GAAGA	3 cut(s)	592, 625, 628
MflI	RGATCY	1 cut(s)	468
MhlI	GDGCHC	3 cut(s)	217, 681, 888
MlsI	TGGCCA	2 cut(s)	293, 309
MluNI	TGGCCA	2 cut(s)	293, 309
Mly113I	GGCGCC	2 cut(s)	39, 626
MmeI	TCCRAC	1 cut(s)	264
Mox20I	TGGCCA	2 cut(s)	293, 309
MroI	TCCGGA	1 cut(s)	492
MroNI	GCCGGC	2 cut(s)	5, 509
MscI	TGGCCA	2 cut(s)	293, 309
MseI	TTAA	1 cut(s)	264
MslI	CAYNNNNRTG	1 cut(s)	828
Msp20I	TGGCCA	2 cut(s)	293, 309
MspA1I	CMGCKG	2 cut(s)	108, 733
MvaI	CCWGG	2 cut(s)	92, 218
MvnI	CGCG	5 cut(s)	108, 176, 482, 623, 716
NaeI	GCCGGC	2 cut(s)	7, 511
NarI	GGCGCC	2 cut(s)	39, 626
NciI	CCSGG	9 cut(s)	148, 166, 200, 212, 301, 473, 517, 691, 785
NdeII	GATC	4 cut(s)	150, 468, 489, 618
NgoMIV	GCCGGC	2 cut(s)	5, 509
NlaIII	CATG	4 cut(s)	124, 238, 292, 586
NlaIV	GGNNCC	9 cut(s)	40, 169, 197, 198, 215, 446, 470, 514, 627
NmeAIII	GCCGAG	3 cut(s)	163, 181, 429
NmuCI	GTSAC	3 cut(s)	274, 779, 817
NspI	RCATGY	1 cut(s)	238
PaeR7I	CTCGAG	1 cut(s)	332
PasI	CCCWGGG	1 cut(s)	217
PcsI	WCGNNNNNNNCGW	3 cut(s)	135, 354, 363
PdiI	GCCGGC	2 cut(s)	7, 511
PfeI	GAWTC	3 cut(s)	328, 421, 922
Pfl23II	CGTACG	1 cut(s)	630
PflFI	GACNNNGTC	1 cut(s)	596
PfoI	TCCNGGA	1 cut(s)	471
PluTI	GGCGCC	2 cut(s)	42, 629
PpuMI	RGGWCCY	2 cut(s)	196, 370
Psp5II	RGGWCCY	2 cut(s)	196, 370
Psp6I	CCWGG	2 cut(s)	90, 216
PspEI	GGTNACC	1 cut(s)	779
PspFI	CCCAGC	1 cut(s)	733
PspGI	CCWGG	2 cut(s)	90, 216
PspLI	CGTACG	1 cut(s)	630
PspN4I	GGNNCC	9 cut(s)	40, 169, 197, 198, 215, 446, 470, 514, 627
PspOMI	GGGCCC	1 cut(s)	213
PspPPI	RGGWCCY	2 cut(s)	196, 370
PsuI	RGATCY	1 cut(s)	468
PsyI	GACNNNGTC	1 cut(s)	596
PvuII	CAGCTG	1 cut(s)	733
RsaI	GTAC	2 cut(s)	29, 632
RsaNI	GTAC	2 cut(s)	28, 631
RseI	CAYNNNNRTG	1 cut(s)	828
SacII	CCGCGG	1 cut(s)	109
SalI	GTCGAC	1 cut(s)	356
SaqAI	TTAA	1 cut(s)	264
Sau3AI	GATC	4 cut(s)	150, 468, 489, 618
SduI	GDGCHC	3 cut(s)	217, 681, 888
SfaNI	GCATC	3 cut(s)	633, 717, 889
SfoI	GGCGCC	2 cut(s)	40, 627
Sfr274I	CTCGAG	1 cut(s)	332
Sfr303I	CCGCGG	1 cut(s)	109
SgrBI	CCGCGG	1 cut(s)	109
SgrDI	CGTCGACG	1 cut(s)	356
SinI	GGWCC	3 cut(s)	196, 370, 495
SlaI	CTCGAG	1 cut(s)	332
SmiMI	CAYNNNNRTG	1 cut(s)	828
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
SspDI	GGCGCC	2 cut(s)	38, 625
StyI	CCWWGG	3 cut(s)	294, 498, 903
TaiI	ACGT	4 cut(s)	129, 357, 525, 546
TaqI	TCGA	6 cut(s)	318, 333, 348, 357, 528, 909
TauI	GCSGC	8 cut(s)	111, 114, 225, 438, 485, 626, 689, 719
TfiI	GAWTC	3 cut(s)	328, 421, 922
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	2 cut(s)	30, 84
TseFI	GTSAC	3 cut(s)	274, 779, 817
TseI	GCWGC	7 cut(s)	54, 57, 247, 438, 655, 667, 730
Tsp45I	GTSAC	3 cut(s)	274, 779, 817
TspGWI	ACGGA	1 cut(s)	414
TspRI	CASTG	2 cut(s)	30, 84
Tth111I	GACNNNGTC	1 cut(s)	596
VneI	GTGCAC	1 cut(s)	677
VpaK11BI	GGWCC	3 cut(s)	196, 370, 495
XagI	CCTNNNNNAGG	1 cut(s)	452
XceI	RCATGY	1 cut(s)	238
XcmI	CCANNNNNNNNNTGG	1 cut(s)	286
XhoI	CTCGAG	1 cut(s)	332
XmiI	GTMKAC	1 cut(s)	357
ZraI	GACGTC	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.