Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0003370

Physical Location & Seq

Genomic Coordinates Forward (+)

16763330 .. 16764259

Gene Structure 930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g13870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCAGGTTCAGGGGTGGTCGCGGTGTACGGAAACGGCGCAATTTCCGAGAGCAAGCAGTCGCCTTTTTCCGTCAAAGTCGGCCTCGCCCAAATGCTCCGCGGCGGCGTGATTATGGACGTCGTGAACGCCGAGCAGGCTCGGGTCGCTGAGGAGGCAGGTGCATGCGCCGTCATGGCCCTGGAGCGCGTCCCCGCTGACATCCGCGCCCAAGGCGGCGTCGCCCGGATGTCCGACCCCCAACTCATCAAAGAAATCAAGCAGGCTGTGACTATCCCTGTCATGGCAAAGGCCAGAATCGGGCACTTCGTCGAGGCCCAAATCCTCGAAGCTATCGGCGTCGATTACGTCGATGAGAGCGAGGTTTTGACCCTCGCCGACGAGGAACACCACATCAACAAGCACAATTTCCGGGTGCCGTTCGTCTGCGGGTGCCGGAACCTCGGCGAGGCCCTCCGCCGTGTCCGGGAGGGCGCGGCGATGATCCGAACAAAAGGCGAGGCCGGAACCGGAAACATCATCGAGGCGGTGCGGCACGTGCGGTCCGTGATGGGGGACATTAGGGTTTTGCGGAACATGGACGACGACGAGGTGTTCACCTTCGCAAAGAAGATCGCGGCGCCGTACGATCTGGTGATGCAGACGAAGCAGCTGGGGAGGCTTCCGGTGGTGCACTTCGCGGCGGGAGGAGTGGCGACGCCGGCGGACGCGGCGCTGATGATGCAGCTGGGGTGCGACGGGGTGTTTGTCGGGTCGGGCGTGTTCAAGAGCGGTGACCCGGCGAAGAGGGCGAGGGCGATTGTGCAAGCGGTGACGCACTACCGGGACCCGGATGTGCTGGCGGAGGTGAGCTGCGGGTTGGGGGAGGCGATGGTGGGGTTGAATTTGAAGGATGAGAAGGTAGAGAGGTTTGCGAATCGGTCTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006082 GO:0006520 GO:0006725 GO:0006778 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0006982 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009651 GO:0009987 GO:0010033 GO:0010224 GO:0010335 GO:0012505 GO:0015994 GO:0016020 GO:0019752 GO:0033013 GO:0033194 GO:0042221 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046982 GO:0046983 GO:0050896 GO:0051186 GO:0071704 GO:0071944 GO:1901360 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00750 map00750

Pfam Domains

Protein Families

SOR_SNZ

Protein Analysis

310

Amino Acids

33.06

Weight (kDa)

6.2

Isoelectric Point (pI)

41.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SOR_SNZ	PF01680	23 - 228	3e-112	SOR/SNZ family
ThiG	PF05690	208 - 272	1e-07	Thiazole biosynthesis protein ThiG

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38230 AT5G01410 AT5G01410
fragaria_vesca	FvH4_3g38650 FvH4_6g11420
malus_domestica	MD04G1153300.v1.1 MD11G1073500.v1.1
prunus_persica	Prupe.6G277500_v2.0.a1 Prupe.8G053100_v2.0.a1
pyrus_communis	pycom04g13870 pycom11g06100 pycom12g15860
rosa_chinensis	RchiOBHm_Chr1g0327251 RchiOBHm_Chr3g0463101 RchiOBHm_Chr5g0069681
rosa_laevigata	RLG00000024812 RLG00000036085
rosa_multiflora	Rmu_sc0000738.1_g000036 Rmu_sc0000766.1_g000039 Rmu_sc0001791.1_g000010 Rmu_sc0007688.1_g000003
rosa_roxburghii	Rroxscaffold_1G00011400 Rroxscaffold_6G00416960
rosa_rugosa	Rorug03G0061400 Rorug05G0399200
rosa_samantha	Rh2CG209300 Rh3AG119600 Rh3BG124100 Rh3CG126000 Rh3DG125100 Rh5BG265000 Rh5BG475000 Rh5CG498600 Rh5DG486500
rosa_wichuraiana	Rw3G010120 Rw5G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	149
AatII	GACGTC	1 cut(s)	123
Acc36I	ACCTGC	1 cut(s)	149
AccB1I	GGYRCC	3 cut(s)	415, 432, 619
AccBSI	CCGCTC	1 cut(s)	771
AccII	CGCG	8 cut(s)	23, 102, 189, 207, 476, 617, 680, 710
AclWI	GGATC	1 cut(s)	478
AcsI	RAATTY	1 cut(s)	883
AcvI	CACGTG	1 cut(s)	538
AcyI	GRCGYC	5 cut(s)	120, 219, 339, 620, 698
AfaI	GTAC	2 cut(s)	29, 626
AfiI	CCNNNNNNNGG	6 cut(s)	283, 300, 448, 466, 552, 829
AgsI	TTSAA	3 cut(s)	766, 883, 889
AjnI	CCWGG	1 cut(s)	180
AluBI	AGCT	4 cut(s)	332, 652, 727, 852
AluI	AGCT	4 cut(s)	332, 652, 727, 852
Alw21I	GWGCWC	1 cut(s)	675
Alw44I	GTGCAC	1 cut(s)	671
AlwI	GGATC	1 cut(s)	478
Ama87I	CYCGRG	1 cut(s)	141
AoxI	GGCC	6 cut(s)	82, 177, 291, 315, 450, 501
ApaLI	GTGCAC	1 cut(s)	671
ApeKI	GCWGC	3 cut(s)	649, 724, 852
ApoI	RAATTY	1 cut(s)	883
ArsI	GACNNNNNNTTYG	2 cut(s)	728, 760
AspLEI	GCGC	7 cut(s)	41, 170, 189, 209, 476, 622, 715
AspS9I	GGNCC	5 cut(s)	178, 316, 451, 543, 826
AsuC2I	CCSGG	6 cut(s)	226, 413, 467, 779, 824, 830
AsuHPI	GGTGA	5 cut(s)	589, 646, 785, 823, 859
AvaI	CYCGRG	1 cut(s)	141
AvaII	GGWCC	2 cut(s)	543, 826
BaeGI	GKGCMC	2 cut(s)	306, 675
BanI	GGYRCC	3 cut(s)	415, 432, 619
BbrPI	CACGTG	1 cut(s)	538
Bbv12I	GWGCWC	1 cut(s)	675
BbvCI	CCTCAGC	1 cut(s)	150
BbvI	GCAGC	3 cut(s)	661, 736, 839
BccI	CCATC	2 cut(s)	544, 865
BceAI	ACGGC	5 cut(s)	52, 155, 403, 444, 607
BciT130I	CCWGG	1 cut(s)	182
BcnI	CCSGG	6 cut(s)	226, 413, 467, 779, 824, 830
BfoI	RGCGCY	2 cut(s)	623, 716
BfuAI	ACCTGC	1 cut(s)	149
BglI	GCCNNNNNGGC	2 cut(s)	137, 176
Bme1390I	CCNGG	7 cut(s)	182, 226, 413, 467, 779, 824, 830
Bme18I	GGWCC	2 cut(s)	543, 826
BmeT110I	CYCGRG	1 cut(s)	141
BmgT120I	GGNCC	5 cut(s)	178, 316, 451, 543, 826
BmiI	GGNNCC	7 cut(s)	417, 434, 440, 508, 621, 827, 828
BmrFI	CCNGG	7 cut(s)	182, 226, 413, 467, 779, 824, 830
BmsI	GCATC	2 cut(s)	627, 711
BpmI	CTGGAG	1 cut(s)	203
Bpu10I	CCTNAGC	1 cut(s)	150
BpuMI	CCSGG	6 cut(s)	226, 413, 467, 779, 824, 830
BsaAI	YACGTR	1 cut(s)	538
BsaHI	GRCGYC	5 cut(s)	120, 219, 339, 620, 698
BsaJI	CCNNGG	4 cut(s)	100, 180, 211, 442
BsaWI	WCCGGW	2 cut(s)	509, 664
Bsc4I	CCNNNNNNNGG	6 cut(s)	283, 300, 448, 466, 552, 829
Bse118I	RCCGGY	1 cut(s)	700
BseBI	CCWGG	1 cut(s)	182
BseDI	CCNNGG	4 cut(s)	100, 180, 211, 442
BseGI	GGATG	4 cut(s)	201, 234, 838, 898
BseLI	CCNNNNNNNGG	6 cut(s)	283, 300, 448, 466, 552, 829
BseMII	CTCAG	2 cut(s)	141, 915
BseRI	GAGGAG	2 cut(s)	167, 702
BseSI	GKGCMC	2 cut(s)	306, 675
BseXI	GCAGC	3 cut(s)	661, 736, 839
BseYI	CCCAGC	2 cut(s)	652, 727
Bsh1236I	CGCG	8 cut(s)	23, 102, 189, 207, 476, 617, 680, 710
BshFI	GGCC	6 cut(s)	84, 179, 293, 317, 452, 503
BshNI	GGYRCC	3 cut(s)	415, 432, 619
BsiHKAI	GWGCWC	1 cut(s)	675
BsiHKCI	CYCGRG	1 cut(s)	141
BsiWI	CGTACG	1 cut(s)	624
BslFI	GGGAC	3 cut(s)	176, 569, 839
BslI	CCNNNNNNNGG	6 cut(s)	283, 300, 448, 466, 552, 829
BsmFI	GGGAC	3 cut(s)	176, 569, 839
BsnI	GGCC	6 cut(s)	84, 179, 293, 317, 452, 503
BsoBI	CYCGRG	1 cut(s)	141
Bsp1286I	GDGCHC	2 cut(s)	306, 675
Bsp143I	GATC	3 cut(s)	483, 612, 628
BspANI	GGCC	6 cut(s)	84, 179, 293, 317, 452, 503
BspCNI	CTCAG	2 cut(s)	142, 916
BspFNI	CGCG	8 cut(s)	23, 102, 189, 207, 476, 617, 680, 710
BspLI	GGNNCC	7 cut(s)	417, 434, 440, 508, 621, 827, 828
BspMI	ACCTGC	1 cut(s)	149
BspPI	GGATC	1 cut(s)	478
BspT107I	GGYRCC	3 cut(s)	415, 432, 619
BsrBI	CCGCTC	1 cut(s)	771
BsrFI	RCCGGY	1 cut(s)	700
BssAI	RCCGGY	1 cut(s)	700
BssECI	CCNNGG	4 cut(s)	100, 180, 211, 442
BssMI	GATC	3 cut(s)	483, 612, 628
BssNI	GRCGYC	5 cut(s)	120, 219, 339, 620, 698
BssT1I	CCWWGG	1 cut(s)	211
Bst2UI	CCWGG	1 cut(s)	182
Bst6I	CTCTTC	1 cut(s)	779
BstACI	GRCGYC	5 cut(s)	120, 219, 339, 620, 698
BstBAI	YACGTR	1 cut(s)	538
BstC8I	GCNNGC	7 cut(s)	56, 138, 166, 264, 702, 807, 840
BstDEI	CTNAG	2 cut(s)	150, 924
BstDSI	CCRYGG	1 cut(s)	100
BstEII	GGTNACC	1 cut(s)	773
BstENI	CCTNNNNNAGG	1 cut(s)	446
BstF5I	GGATG	4 cut(s)	201, 234, 838, 898
BstFNI	CGCG	8 cut(s)	23, 102, 189, 207, 476, 617, 680, 710
BstH2I	RGCGCY	2 cut(s)	623, 716
BstHHI	GCGC	7 cut(s)	41, 170, 189, 209, 476, 622, 715
BstKTI	GATC	3 cut(s)	486, 615, 631
BstMBI	GATC	3 cut(s)	483, 612, 628
BstNI	CCWGG	1 cut(s)	182
BstNSI	RCATGY	1 cut(s)	168
BstPI	GGTNACC	1 cut(s)	773
BstSCI	CCNGG	7 cut(s)	180, 224, 411, 465, 777, 822, 828
BstSLI	GKGCMC	2 cut(s)	306, 675
BstUI	CGCG	8 cut(s)	23, 102, 189, 207, 476, 617, 680, 710
BstV1I	GCAGC	3 cut(s)	661, 736, 839
BsuRI	GGCC	6 cut(s)	84, 179, 293, 317, 452, 503
BtgI	CCRYGG	1 cut(s)	100
BtgZI	GCGATG	2 cut(s)	494, 884
BtsCI	GGATG	4 cut(s)	201, 234, 838, 898
BveI	ACCTGC	1 cut(s)	149
Cac8I	GCNNGC	7 cut(s)	56, 138, 166, 264, 702, 807, 840
CfoI	GCGC	7 cut(s)	41, 170, 189, 209, 476, 622, 715
Cfr10I	RCCGGY	1 cut(s)	700
Cfr13I	GGNCC	5 cut(s)	178, 316, 451, 543, 826
Cfr42I	CCGCGG	1 cut(s)	103
CpoI	CGGWCCG	1 cut(s)	543
CseI	GACGC	6 cut(s)	178, 208, 328, 706, 716, 823
Csp6I	GTAC	2 cut(s)	28, 625
CspI	CGGWCCG	1 cut(s)	543
CviAII	CATG	4 cut(s)	165, 175, 283, 577
CviQI	GTAC	2 cut(s)	28, 625
DdeI	CTNAG	2 cut(s)	150, 924
DinI	GGCGCC	1 cut(s)	621
DpnI	GATC	3 cut(s)	485, 614, 630
DpnII	GATC	3 cut(s)	483, 612, 628
Eam1104I	CTCTTC	1 cut(s)	779
EarI	CTCTTC	1 cut(s)	779
EciI	GGCGGA	3 cut(s)	446, 719, 857
Eco130I	CCWWGG	1 cut(s)	211
Eco47I	GGWCC	2 cut(s)	543, 826
Eco72I	CACGTG	1 cut(s)	538
Eco88I	CYCGRG	1 cut(s)	141
Eco91I	GGTNACC	1 cut(s)	773
EcoNI	CCTNNNNNAGG	1 cut(s)	446
EcoO109I	RGGNCCY	2 cut(s)	451, 826
EcoO65I	GGTNACC	1 cut(s)	773
EcoRII	CCWGG	1 cut(s)	180
EcoT14I	CCWWGG	1 cut(s)	211
EgeI	GGCGCC	1 cut(s)	621
EheI	GGCGCC	1 cut(s)	621
ErhI	CCWWGG	1 cut(s)	211
FaeI	CATG	4 cut(s)	168, 178, 286, 580
FaiI	YATR	5 cut(s)	116, 166, 176, 284, 578
FaqI	GGGAC	3 cut(s)	176, 569, 839
FatI	CATG	4 cut(s)	164, 174, 282, 576
FauI	CCCGC	4 cut(s)	202, 422, 676, 848
FokI	GGATG	4 cut(s)	188, 241, 845, 905
GlaI	GCGC	7 cut(s)	40, 169, 188, 208, 475, 621, 714
GsaI	CCCAGC	2 cut(s)	656, 731
GsuI	CTGGAG	1 cut(s)	203
HaeII	RGCGCY	2 cut(s)	623, 716
HaeIII	GGCC	6 cut(s)	84, 179, 293, 317, 452, 503
HgaI	GACGC	6 cut(s)	178, 208, 328, 706, 716, 823
HhaI	GCGC	7 cut(s)	41, 170, 189, 209, 476, 622, 715
Hin1I	GRCGYC	5 cut(s)	120, 219, 339, 620, 698
Hin1II	CATG	4 cut(s)	168, 178, 286, 580
Hin6I	GCGC	7 cut(s)	39, 168, 187, 207, 474, 620, 713
HinP1I	GCGC	7 cut(s)	39, 168, 187, 207, 474, 620, 713
HinfI	GANTC	2 cut(s)	297, 916
HphI	GGTGA	5 cut(s)	589, 646, 785, 823, 859
Hpy166II	GTNNAC	4 cut(s)	28, 127, 597, 673
Hpy188I	TCNGA	4 cut(s)	49, 235, 488, 925
Hpy188III	TCNNGA	2 cut(s)	124, 766
Hpy8I	GTNNAC	4 cut(s)	28, 127, 597, 673
HpyAV	CCTTC	3 cut(s)	610, 883, 892
HpyCH4IV	ACGT	3 cut(s)	120, 348, 537
HpyCH4V	TGCA	5 cut(s)	164, 640, 673, 724, 805
HpyF3I	CTNAG	2 cut(s)	150, 924
HpySE526I	ACGT	3 cut(s)	120, 348, 537
Hsp92I	GRCGYC	5 cut(s)	120, 219, 339, 620, 698
Hsp92II	CATG	4 cut(s)	168, 178, 286, 580
HspAI	GCGC	7 cut(s)	39, 168, 187, 207, 474, 620, 713
KasI	GGCGCC	1 cut(s)	619
KflI	GGGWCCC	1 cut(s)	826
KroI	GCCGGC	1 cut(s)	700
KroNI	GCCGGC	1 cut(s)	702
KspI	CCGCGG	1 cut(s)	103
Kzo9I	GATC	3 cut(s)	483, 612, 628
LmnI	GCTCC	2 cut(s)	102, 184
Lsp1109I	GCAGC	3 cut(s)	661, 736, 839
LweI	GCATC	2 cut(s)	627, 711
MaeII	ACGT	3 cut(s)	120, 348, 537
MaeIII	GTNAC	3 cut(s)	268, 773, 811
MalI	GATC	3 cut(s)	485, 614, 630
MbiI	CCGCTC	1 cut(s)	771
MboI	GATC	3 cut(s)	483, 612, 628
MboII	GAAGA	2 cut(s)	622, 796
MhlI	GDGCHC	2 cut(s)	306, 675
MluCI	AATT	3 cut(s)	42, 406, 883
Mly113I	GGCGCC	1 cut(s)	620
MmeI	TCCRAC	1 cut(s)	258
MreI	CGCCGGCG	1 cut(s)	700
MroNI	GCCGGC	1 cut(s)	700
MspA1I	CMGCKG	4 cut(s)	102, 197, 652, 727
MspR9I	CCNGG	7 cut(s)	182, 226, 413, 467, 779, 824, 830
MvaI	CCWGG	1 cut(s)	182
MvnI	CGCG	8 cut(s)	23, 102, 189, 207, 476, 617, 680, 710
NaeI	GCCGGC	1 cut(s)	702
NarI	GGCGCC	1 cut(s)	620
NciI	CCSGG	6 cut(s)	226, 413, 467, 779, 824, 830
NdeII	GATC	3 cut(s)	483, 612, 628
NgoMIV	GCCGGC	1 cut(s)	700
NlaIII	CATG	4 cut(s)	168, 178, 286, 580
NlaIV	GGNNCC	7 cut(s)	417, 434, 440, 508, 621, 827, 828
NmeAIII	GCCGAG	2 cut(s)	157, 423
NmuCI	GTSAC	3 cut(s)	268, 773, 811
NspI	RCATGY	1 cut(s)	168
PaeI	GCATGC	1 cut(s)	168
PaqCI	CACCTGC	1 cut(s)	149
PcsI	WCGNNNNNNNCGW	6 cut(s)	129, 306, 348, 357, 543, 756
PdiI	GCCGGC	1 cut(s)	702
PfeI	GAWTC	2 cut(s)	297, 916
Pfl23II	CGTACG	1 cut(s)	624
PfoI	TCCNGGA	1 cut(s)	465
PluTI	GGCGCC	1 cut(s)	623
PmaCI	CACGTG	1 cut(s)	538
PmlI	CACGTG	1 cut(s)	538
Ppu21I	YACGTR	1 cut(s)	538
PpuMI	RGGWCCY	1 cut(s)	826
Psp5II	RGGWCCY	1 cut(s)	826
Psp6I	CCWGG	1 cut(s)	180
PspCI	CACGTG	1 cut(s)	538
PspEI	GGTNACC	1 cut(s)	773
PspFI	CCCAGC	2 cut(s)	652, 727
PspGI	CCWGG	1 cut(s)	180
PspLI	CGTACG	1 cut(s)	624
PspN4I	GGNNCC	7 cut(s)	417, 434, 440, 508, 621, 827, 828
PspPI	GGNCC	5 cut(s)	178, 316, 451, 543, 826
PspPPI	RGGWCCY	1 cut(s)	826
PvuII	CAGCTG	2 cut(s)	652, 727
RsaI	GTAC	2 cut(s)	29, 626
RsaNI	GTAC	2 cut(s)	28, 625
Rsr2I	CGGWCCG	1 cut(s)	543
RsrII	CGGWCCG	1 cut(s)	543
SacII	CCGCGG	1 cut(s)	103
Sau3AI	GATC	3 cut(s)	483, 612, 628
Sau96I	GGNCC	5 cut(s)	178, 316, 451, 543, 826
ScrFI	CCNGG	7 cut(s)	182, 226, 413, 467, 779, 824, 830
SduI	GDGCHC	2 cut(s)	306, 675
SfaNI	GCATC	2 cut(s)	627, 711
SfoI	GGCGCC	1 cut(s)	621
Sfr303I	CCGCGG	1 cut(s)	103
SgrAI	CRCCGGYG	1 cut(s)	700
SgrBI	CCGCGG	1 cut(s)	103
SinI	GGWCC	2 cut(s)	543, 826
SphI	GCATGC	1 cut(s)	168
Sse9I	AATT	3 cut(s)	42, 406, 883
SspDI	GGCGCC	1 cut(s)	619
StyD4I	CCNGG	7 cut(s)	180, 224, 411, 465, 777, 822, 828
StyI	CCWWGG	1 cut(s)	211
TaiI	ACGT	3 cut(s)	123, 351, 540
TaqI	TCGA	5 cut(s)	312, 327, 342, 351, 522
TaqII	GACCGA	1 cut(s)	909
TasI	AATT	3 cut(s)	42, 406, 883
TauI	GCSGC	8 cut(s)	105, 108, 219, 479, 535, 620, 683, 713
TfiI	GAWTC	2 cut(s)	297, 916
TseFI	GTSAC	3 cut(s)	268, 773, 811
TseI	GCWGC	3 cut(s)	649, 724, 852
Tsp45I	GTSAC	3 cut(s)	268, 773, 811
TspGWI	ACGGA	3 cut(s)	45, 61, 535
VneI	GTGCAC	1 cut(s)	671
VpaK11BI	GGWCC	2 cut(s)	543, 826
XagI	CCTNNNNNAGG	1 cut(s)	446
XapI	RAATTY	1 cut(s)	883
XceI	RCATGY	1 cut(s)	168
ZraI	GACGTC	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.