pycom12g15860

Belongs to the PdxS SNZ family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Forward (+)
18305150 .. 18306079
930 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g15860.1

Sequence Viewer

Length: 930 bp
ATGGCGGGTTCAGGAGTGGTGGCGGTGTATGGAAACGGCGCTATCGCCGAGAGTAAGCAGTCGCCTTTCTCCGTCAAAGTGGGTCTCGCCCAAATGCTCCGCGGCGGTGTGATTATGGACGTCGTCAACGCCGAGCAGGCCCGGGTCGCGGAGGAGGCCGGCGCATGCGCCGTCATGGCCCTGGAGCGTGTTCCCGCCGACATCCGCGCCCAAGGCGGCGTCGCCCGGATGTCCGACCCGCAACTCATCAAAGAAATCAAGCAGGCCGTGACAATCCCCGTCATGGCTAAGGCCCGAATCGGGCACTTCGTCGAGGCCCAAATCCTCGAAGCCATCGGCGTCGATTACGTCGACGAGAGCGAGGTTCTGACCCTCGCCGACGAGGAGCACCACATCAACAAGCACAATTTCCGGGTGCCCTTCGTCTGCGGCTGCCGGAACCTCGGCGAGGCCCTCCGCCGTGTCCGGGAGGGCGCGGCGATGATCCGGACGAAAGGCGAGGCCGGCACGGGAAACATCATCGAGGCGGTGCGGCACGTGCGGTCCGTGATGGGGGACATTAGGGTTTTGCGGAACATGGACGATGACGAGGTGTTCACCTTCGCAAAAAAGATCGCGGCGCCGTACGATCTGGTGATGCAGACGAAGCAGCTTGGGAGGCTTCCGGTGGTGCACTTCGCCGCGGGAGGAGTGGCGACGCCGGCTGACGCGGCGCTGATGATGCAGCTGGGGTGCGACGGGGTGTTCGTCGGATCGGGCGTGTTCAAGAGCGGTGACCCGGCGAAGCGGGCGAGAGCGATTGTGCAGGCGGTGACGCACTACCGGGACCCCGATGTGTTGGCGGAGGTGAGCTGCGGGTTGGGGGAGGCGATGGTGGGGTTGAACTTGAAGGATGCGAAGGTGGAGAGGTTTGCGAATCGGTCTGAGTGA

Protein Analysis

310

Amino Acids

32.99

Weight (kDa)

6.41

Isoelectric Point (pI)

40.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SOR_SNZ PF01680 23 - 228 3e-112 SOR/SNZ family
ThiG PF05690 208 - 272 1e-07 Thiazole biosynthesis protein ThiG
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 123
AccB1I GGYRCC 2 cut(s) 415, 619
AccBSI CCGCTC 1 cut(s) 771
AccI GTMKAC 1 cut(s) 351
AccII CGCG 7 cut(s) 102, 149, 207, 476, 617, 683, 710
AccIII TCCGGA 1 cut(s) 486
AclWI GGATC 2 cut(s) 478, 760
AcvI CACGTG 1 cut(s) 538
AcyI GRCGYC 5 cut(s) 120, 219, 339, 620, 698
AfaI GTAC 1 cut(s) 626
AfiI CCNNNNNNNGG 6 cut(s) 148, 283, 300, 448, 466, 552
AgsI TTSAA 3 cut(s) 766, 883, 889
AjnI CCWGG 1 cut(s) 180
AluBI AGCT 3 cut(s) 652, 727, 852
AluI AGCT 3 cut(s) 652, 727, 852
Alw21I GWGCWC 2 cut(s) 390, 675
Alw26I GTCTC 1 cut(s) 89
Alw44I GTGCAC 1 cut(s) 671
AlwI GGATC 2 cut(s) 478, 760
Ama87I CYCGRG 1 cut(s) 141
Aor13HI TCCGGA 1 cut(s) 486
AoxI GGCC 8 cut(s) 138, 156, 177, 264, 291, 315, 450, 501
ApaLI GTGCAC 1 cut(s) 671
ApeKI GCWGC 4 cut(s) 432, 649, 724, 852
ArsI GACNNNNNNTTYG 2 cut(s) 728, 760
AspLEI GCGC 7 cut(s) 41, 164, 170, 209, 476, 622, 715
AspS9I GGNCC 7 cut(s) 139, 178, 292, 316, 451, 543, 826
AsuC2I CCSGG 7 cut(s) 142, 143, 226, 413, 467, 779, 824
AsuHPI GGTGA 5 cut(s) 589, 646, 785, 823, 859
AvaI CYCGRG 1 cut(s) 141
AvaII GGWCC 2 cut(s) 543, 826
BaeGI GKGCMC 3 cut(s) 306, 420, 675
BanI GGYRCC 2 cut(s) 415, 619
BbrPI CACGTG 1 cut(s) 538
Bbv12I GWGCWC 2 cut(s) 390, 675
BbvI GCAGC 4 cut(s) 419, 661, 736, 839
BccI CCATC 3 cut(s) 341, 544, 865
BceAI ACGGC 5 cut(s) 52, 155, 251, 444, 607
BciT130I CCWGG 1 cut(s) 182
BcnI CCSGG 7 cut(s) 142, 143, 226, 413, 467, 779, 824
BcoDI GTCTC 1 cut(s) 89
BfoI RGCGCY 3 cut(s) 42, 623, 716
BglI GCCNNNNNGGC 2 cut(s) 137, 176
Bme1390I CCNGG 8 cut(s) 142, 143, 182, 226, 413, 467, 779, 824
Bme18I GGWCC 2 cut(s) 543, 826
BmeT110I CYCGRG 1 cut(s) 141
BmgT120I GGNCC 7 cut(s) 139, 178, 292, 316, 451, 543, 826
BmiI GGNNCC 5 cut(s) 417, 440, 621, 827, 828
BmrFI CCNGG 8 cut(s) 142, 143, 182, 226, 413, 467, 779, 824
BmsI GCATC 3 cut(s) 627, 711, 883
BpmI CTGGAG 1 cut(s) 203
Bpu10I CCTNAGC 1 cut(s) 288
BpuMI CCSGG 7 cut(s) 142, 143, 226, 413, 467, 779, 824
BsaAI YACGTR 1 cut(s) 538
BsaHI GRCGYC 5 cut(s) 120, 219, 339, 620, 698
BsaI GGTCTC 1 cut(s) 89
BsaJI CCNNGG 6 cut(s) 100, 141, 180, 211, 442, 681
BsaWI WCCGGW 2 cut(s) 486, 664
Bsc4I CCNNNNNNNGG 6 cut(s) 148, 283, 300, 448, 466, 552
Bse118I RCCGGY 3 cut(s) 158, 503, 700
BseAI TCCGGA 1 cut(s) 486
BseBI CCWGG 1 cut(s) 182
BseDI CCNNGG 6 cut(s) 100, 141, 180, 211, 442, 681
BseGI GGATG 3 cut(s) 201, 234, 898
BseLI CCNNNNNNNGG 6 cut(s) 148, 283, 300, 448, 466, 552
BseMII CTCAG 1 cut(s) 915
BseRI GAGGAG 3 cut(s) 167, 398, 702
BseSI GKGCMC 3 cut(s) 306, 420, 675
BseXI GCAGC 4 cut(s) 419, 661, 736, 839
BseYI CCCAGC 1 cut(s) 727
BsgI GTGCAG 1 cut(s) 824
Bsh1236I CGCG 7 cut(s) 102, 149, 207, 476, 617, 683, 710
BshFI GGCC 8 cut(s) 140, 158, 179, 266, 293, 317, 452, 503
BshNI GGYRCC 2 cut(s) 415, 619
BsiHKAI GWGCWC 2 cut(s) 390, 675
BsiHKCI CYCGRG 1 cut(s) 141
BsiWI CGTACG 1 cut(s) 624
BslFI GGGAC 2 cut(s) 569, 839
BslI CCNNNNNNNGG 6 cut(s) 148, 283, 300, 448, 466, 552
BsmAI GTCTC 1 cut(s) 89
BsmFI GGGAC 2 cut(s) 569, 839
BsnI GGCC 8 cut(s) 140, 158, 179, 266, 293, 317, 452, 503
Bso31I GGTCTC 1 cut(s) 89
BsoBI CYCGRG 1 cut(s) 141
Bsp1286I GDGCHC 4 cut(s) 306, 390, 420, 675
Bsp13I TCCGGA 1 cut(s) 486
Bsp143I GATC 4 cut(s) 483, 612, 628, 752
BspANI GGCC 8 cut(s) 140, 158, 179, 266, 293, 317, 452, 503
BspCNI CTCAG 1 cut(s) 916
BspEI TCCGGA 1 cut(s) 486
BspFNI CGCG 7 cut(s) 102, 149, 207, 476, 617, 683, 710
BspLI GGNNCC 5 cut(s) 417, 440, 621, 827, 828
BspPI GGATC 2 cut(s) 478, 760
BspT107I GGYRCC 2 cut(s) 415, 619
BspTNI GGTCTC 1 cut(s) 89
BsrBI CCGCTC 1 cut(s) 771
BsrFI RCCGGY 3 cut(s) 158, 503, 700
BssAI RCCGGY 3 cut(s) 158, 503, 700
BssECI CCNNGG 6 cut(s) 100, 141, 180, 211, 442, 681
BssMI GATC 4 cut(s) 483, 612, 628, 752
BssNI GRCGYC 5 cut(s) 120, 219, 339, 620, 698
BssT1I CCWWGG 1 cut(s) 211
Bst2UI CCWGG 1 cut(s) 182
BstACI GRCGYC 5 cut(s) 120, 219, 339, 620, 698
BstBAI YACGTR 1 cut(s) 538
BstC8I GCNNGC 8 cut(s) 138, 160, 166, 264, 505, 702, 789, 807
BstDEI CTNAG 2 cut(s) 288, 924
BstDSI CCRYGG 2 cut(s) 100, 681
BstEII GGTNACC 1 cut(s) 773
BstENI CCTNNNNNAGG 1 cut(s) 446
BstF5I GGATG 3 cut(s) 201, 234, 898
BstFNI CGCG 7 cut(s) 102, 149, 207, 476, 617, 683, 710
BstH2I RGCGCY 3 cut(s) 42, 623, 716
BstHHI GCGC 7 cut(s) 41, 164, 170, 209, 476, 622, 715
BstKTI GATC 4 cut(s) 486, 615, 631, 755
BstMAI GTCTC 1 cut(s) 89
BstMBI GATC 4 cut(s) 483, 612, 628, 752
BstNI CCWGG 1 cut(s) 182
BstNSI RCATGY 1 cut(s) 168
BstPI GGTNACC 1 cut(s) 773
BstSCI CCNGG 8 cut(s) 140, 141, 180, 224, 411, 465, 777, 822
BstSLI GKGCMC 3 cut(s) 306, 420, 675
BstUI CGCG 7 cut(s) 102, 149, 207, 476, 617, 683, 710
BstV1I GCAGC 4 cut(s) 419, 661, 736, 839
BsuRI GGCC 8 cut(s) 140, 158, 179, 266, 293, 317, 452, 503
BtgI CCRYGG 2 cut(s) 100, 681
BtgZI GCGATG 2 cut(s) 494, 884
BtsCI GGATG 3 cut(s) 201, 234, 898
Cac8I GCNNGC 8 cut(s) 138, 160, 166, 264, 505, 702, 789, 807
CfoI GCGC 7 cut(s) 41, 164, 170, 209, 476, 622, 715
Cfr10I RCCGGY 3 cut(s) 158, 503, 700
Cfr13I GGNCC 7 cut(s) 139, 178, 292, 316, 451, 543, 826
Cfr42I CCGCGG 2 cut(s) 103, 684
Cfr9I CCCGGG 1 cut(s) 141
CpoI CGGWCCG 1 cut(s) 543
CseI GACGC 5 cut(s) 208, 328, 706, 716, 823
Csp6I GTAC 1 cut(s) 625
CspI CGGWCCG 1 cut(s) 543
CviAII CATG 4 cut(s) 165, 175, 283, 577
CviQI GTAC 1 cut(s) 625
DdeI CTNAG 2 cut(s) 288, 924
DinI GGCGCC 1 cut(s) 621
DpnI GATC 4 cut(s) 485, 614, 630, 754
DpnII GATC 4 cut(s) 483, 612, 628, 752
EciI GGCGGA 2 cut(s) 446, 857
Eco130I CCWWGG 1 cut(s) 211
Eco31I GGTCTC 1 cut(s) 89
Eco47I GGWCC 2 cut(s) 543, 826
Eco72I CACGTG 1 cut(s) 538
Eco88I CYCGRG 1 cut(s) 141
Eco91I GGTNACC 1 cut(s) 773
EcoNI CCTNNNNNAGG 1 cut(s) 446
EcoO109I RGGNCCY 2 cut(s) 451, 826
EcoO65I GGTNACC 1 cut(s) 773
EcoRII CCWGG 1 cut(s) 180
EcoT14I CCWWGG 1 cut(s) 211
EgeI GGCGCC 1 cut(s) 621
EheI GGCGCC 1 cut(s) 621
ErhI CCWWGG 1 cut(s) 211
FaeI CATG 4 cut(s) 168, 178, 286, 580
FaiI YATR 6 cut(s) 30, 116, 166, 176, 284, 578
FaqI GGGAC 2 cut(s) 569, 839
FatI CATG 4 cut(s) 164, 174, 282, 576
FauI CCCGC 5 cut(s) 202, 246, 676, 780, 848
FblI GTMKAC 1 cut(s) 351
FokI GGATG 3 cut(s) 188, 241, 905
GlaI GCGC 7 cut(s) 40, 163, 169, 208, 475, 621, 714
GsaI CCCAGC 1 cut(s) 731
GsuI CTGGAG 1 cut(s) 203
HaeII RGCGCY 3 cut(s) 42, 623, 716
HaeIII GGCC 8 cut(s) 140, 158, 179, 266, 293, 317, 452, 503
HgaI GACGC 5 cut(s) 208, 328, 706, 716, 823
HhaI GCGC 7 cut(s) 41, 164, 170, 209, 476, 622, 715
Hin1I GRCGYC 5 cut(s) 120, 219, 339, 620, 698
Hin1II CATG 4 cut(s) 168, 178, 286, 580
Hin6I GCGC 7 cut(s) 39, 162, 168, 207, 474, 620, 713
HinP1I GCGC 7 cut(s) 39, 162, 168, 207, 474, 620, 713
HincII GTYRAC 2 cut(s) 127, 352
HindII GTYRAC 2 cut(s) 127, 352
HinfI GANTC 2 cut(s) 297, 916
HphI GGTGA 5 cut(s) 589, 646, 785, 823, 859
Hpy166II GTNNAC 4 cut(s) 127, 352, 597, 673
Hpy188I TCNGA 4 cut(s) 235, 369, 752, 925
Hpy188III TCNNGA 3 cut(s) 12, 487, 766
Hpy8I GTNNAC 4 cut(s) 127, 352, 597, 673
HpyAV CCTTC 4 cut(s) 430, 610, 883, 892
HpyCH4IV ACGT 3 cut(s) 120, 348, 537
HpyCH4V TGCA 4 cut(s) 640, 673, 724, 805
HpyF3I CTNAG 2 cut(s) 288, 924
HpySE526I ACGT 3 cut(s) 120, 348, 537
Hsp92I GRCGYC 5 cut(s) 120, 219, 339, 620, 698
Hsp92II CATG 4 cut(s) 168, 178, 286, 580
HspAI GCGC 7 cut(s) 39, 162, 168, 207, 474, 620, 713
KasI GGCGCC 1 cut(s) 619
KflI GGGWCCC 1 cut(s) 826
Kpn2I TCCGGA 1 cut(s) 486
KroI GCCGGC 3 cut(s) 158, 503, 700
KroNI GCCGGC 3 cut(s) 160, 505, 702
KspI CCGCGG 2 cut(s) 103, 684
Kzo9I GATC 4 cut(s) 483, 612, 628, 752
LmnI GCTCC 3 cut(s) 102, 184, 385
Lsp1109I GCAGC 4 cut(s) 419, 661, 736, 839
LweI GCATC 3 cut(s) 627, 711, 883
MaeII ACGT 3 cut(s) 120, 348, 537
MaeIII GTNAC 3 cut(s) 268, 773, 811
MalI GATC 4 cut(s) 485, 614, 630, 754
MbiI CCGCTC 1 cut(s) 771
MboI GATC 4 cut(s) 483, 612, 628, 752
MhlI GDGCHC 4 cut(s) 306, 390, 420, 675
MluCI AATT 1 cut(s) 406
Mly113I GGCGCC 1 cut(s) 620
MmeI TCCRAC 2 cut(s) 258, 730
MroI TCCGGA 1 cut(s) 486
MroNI GCCGGC 3 cut(s) 158, 503, 700
MspA1I CMGCKG 3 cut(s) 102, 683, 727
MspR9I CCNGG 8 cut(s) 142, 143, 182, 226, 413, 467, 779, 824
MvaI CCWGG 1 cut(s) 182
MvnI CGCG 7 cut(s) 102, 149, 207, 476, 617, 683, 710
NaeI GCCGGC 3 cut(s) 160, 505, 702
NarI GGCGCC 1 cut(s) 620
NciI CCSGG 7 cut(s) 142, 143, 226, 413, 467, 779, 824
NdeII GATC 4 cut(s) 483, 612, 628, 752
NgoMIV GCCGGC 3 cut(s) 158, 503, 700
NlaIII CATG 4 cut(s) 168, 178, 286, 580
NlaIV GGNNCC 5 cut(s) 417, 440, 621, 827, 828
NmeAIII GCCGAG 3 cut(s) 73, 157, 423
NmuCI GTSAC 3 cut(s) 268, 773, 811
NspI RCATGY 1 cut(s) 168
PaeI GCATGC 1 cut(s) 168
PcsI WCGNNNNNNNCGW 7 cut(s) 129, 306, 348, 357, 543, 744, 756
PdiI GCCGGC 3 cut(s) 160, 505, 702
PfeI GAWTC 2 cut(s) 297, 916
Pfl23II CGTACG 1 cut(s) 624
PflFI GACNNNGTC 1 cut(s) 122
PfoI TCCNGGA 1 cut(s) 465
PluTI GGCGCC 1 cut(s) 623
PmaCI CACGTG 1 cut(s) 538
PmlI CACGTG 1 cut(s) 538
Ppu21I YACGTR 1 cut(s) 538
PpuMI RGGWCCY 1 cut(s) 826
Psp5II RGGWCCY 1 cut(s) 826
Psp6I CCWGG 1 cut(s) 180
PspCI CACGTG 1 cut(s) 538
PspEI GGTNACC 1 cut(s) 773
PspFI CCCAGC 1 cut(s) 727
PspGI CCWGG 1 cut(s) 180
PspLI CGTACG 1 cut(s) 624
PspN4I GGNNCC 5 cut(s) 417, 440, 621, 827, 828
PspPI GGNCC 7 cut(s) 139, 178, 292, 316, 451, 543, 826
PspPPI RGGWCCY 1 cut(s) 826
PsyI GACNNNGTC 1 cut(s) 122
PvuII CAGCTG 1 cut(s) 727
RsaI GTAC 1 cut(s) 626
RsaNI GTAC 1 cut(s) 625
Rsr2I CGGWCCG 1 cut(s) 543
RsrII CGGWCCG 1 cut(s) 543
SacII CCGCGG 2 cut(s) 103, 684
SalI GTCGAC 1 cut(s) 350
Sau3AI GATC 4 cut(s) 483, 612, 628, 752
Sau96I GGNCC 7 cut(s) 139, 178, 292, 316, 451, 543, 826
ScrFI CCNGG 8 cut(s) 142, 143, 182, 226, 413, 467, 779, 824
SduI GDGCHC 4 cut(s) 306, 390, 420, 675
SfaNI GCATC 3 cut(s) 627, 711, 883
SfoI GGCGCC 1 cut(s) 621
Sfr303I CCGCGG 2 cut(s) 103, 684
SgrBI CCGCGG 2 cut(s) 103, 684
SgrDI CGTCGACG 1 cut(s) 350
SinI GGWCC 2 cut(s) 543, 826
SmaI CCCGGG 1 cut(s) 143
SphI GCATGC 1 cut(s) 168
Sse9I AATT 1 cut(s) 406
SspDI GGCGCC 1 cut(s) 619
StyD4I CCNGG 8 cut(s) 140, 141, 180, 224, 411, 465, 777, 822
StyI CCWWGG 1 cut(s) 211
TaiI ACGT 3 cut(s) 123, 351, 540
TaqI TCGA 5 cut(s) 312, 327, 342, 351, 522
TaqII GACCGA 1 cut(s) 909
TasI AATT 1 cut(s) 406
TauI GCSGC 8 cut(s) 105, 219, 432, 479, 535, 620, 683, 713
TfiI GAWTC 2 cut(s) 297, 916
TseFI GTSAC 3 cut(s) 268, 773, 811
TseI GCWGC 4 cut(s) 432, 649, 724, 852
Tsp45I GTSAC 3 cut(s) 268, 773, 811
TspGWI ACGGA 2 cut(s) 61, 535
TspMI CCCGGG 1 cut(s) 141
Tth111I GACNNNGTC 1 cut(s) 122
VneI GTGCAC 1 cut(s) 671
VpaK11BI GGWCC 2 cut(s) 543, 826
XagI CCTNNNNNAGG 1 cut(s) 446
XceI RCATGY 1 cut(s) 168
XmaI CCCGGG 1 cut(s) 141
XmiI GTMKAC 1 cut(s) 351
ZraI GACGTC 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.