Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003370

Physical Location & Seq

Genomic Coordinates Forward (+)

5857019 .. 5858576

Gene Structure 1558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G053100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGCCATTCGTCTCCGTAGTAGCCAGAGTCCCTTCTCCAACCTCGACCCAAACAAAGAAAAAAATCCCAAACTTTGGAAAGAATGAAGCCCAAACGGCCAAAACACTCATCCCTGATGTTAGTGAGCACCACATCAACGAGCACAATTTTCGGGTGTCGTTCGTCTGTGGGTGCCAGAATCTCGGTGAGGCGCTCTGCCGAGTCCGAGAAGGAGCAACTATGATTTGGATCAAGGGCGATGCCGGCACGGGGAACATCATCGAAGCGGTGAGGCATGTGTGGTCCGTGATATGGGACATTAGGGTTTTGTGGAACATGGACGACGACGAGGTGTTTACTTTCACGAAGAAGATTGCTGCGCCGTACGATATGGTGATGCAGACGAAGCAACTGAGGAGGCTGCATGTGGTGCACTTCACTGCGGGAAGCTTCGGCATGTTCAAGAGTGGTGACTTGGTGAAGAGGGGGAGGGCAATTGTGCAGGCTATGACCCATTACAGGGACCCGGATGTGCTAGGTAAGGTGACTTGCGGGTTGGGCGAGGCCATGGTTGGGTTGAATTTGAAGGACGAGAAGGTGGAGAGGTTGGCTAATCGGTCTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006082 GO:0006520 GO:0006725 GO:0006778 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0006982 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009651 GO:0009987 GO:0010033 GO:0010224 GO:0010335 GO:0012505 GO:0015994 GO:0016020 GO:0019752 GO:0033013 GO:0033194 GO:0042221 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046982 GO:0046983 GO:0050896 GO:0051186 GO:0071704 GO:0071944 GO:1901360 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00750 map00750

Pfam Domains

Protein Families

SOR_SNZ

Protein Analysis

202

Amino Acids

22.55

Weight (kDa)

9.36

Isoelectric Point (pI)

27.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38230 AT5G01410 AT5G01410
fragaria_vesca	FvH4_3g38650 FvH4_6g11420
malus_domestica	MD04G1153300.v1.1 MD11G1073500.v1.1
prunus_persica	Prupe.6G277500_v2.0.a1 Prupe.8G053100_v2.0.a1
pyrus_communis	pycom04g13870 pycom11g06100 pycom12g15860
rosa_chinensis	RchiOBHm_Chr1g0327251 RchiOBHm_Chr3g0463101 RchiOBHm_Chr5g0069681
rosa_laevigata	RLG00000024812 RLG00000036085
rosa_multiflora	Rmu_sc0000738.1_g000036 Rmu_sc0000766.1_g000039 Rmu_sc0001791.1_g000010 Rmu_sc0007688.1_g000003
rosa_roxburghii	Rroxscaffold_1G00011400 Rroxscaffold_6G00416960
rosa_rugosa	Rorug03G0061400 Rorug05G0399200
rosa_samantha	Rh2CG209300 Rh3AG119600 Rh3BG124100 Rh3CG126000 Rh3DG125100 Rh5BG265000 Rh5BG475000 Rh5CG498600 Rh5DG486500
rosa_wichuraiana	Rw3G010120 Rw5G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	171
AccB7I	CCANNNNNTGG	1 cut(s)	74
AciI	CCGC	3 cut(s)	266, 422, 531
AclWI	GGATC	1 cut(s)	236
AcoI	YGGCCR	1 cut(s)	96
AcsI	RAATTY	1 cut(s)	559
AfaI	GTAC	1 cut(s)	365
AfiI	CCNNNNNNNGG	6 cut(s)	74, 249, 291, 498, 499, 552
AgsI	TTSAA	3 cut(s)	442, 559, 565
AluBI	AGCT	1 cut(s)	429
AluI	AGCT	1 cut(s)	429
Alw21I	GWGCWC	3 cut(s)	129, 144, 414
Alw26I	GTCTC	1 cut(s)	16
Alw44I	GTGCAC	1 cut(s)	410
AlwI	GGATC	1 cut(s)	236
AoxI	GGCC	2 cut(s)	96, 543
ApaLI	GTGCAC	1 cut(s)	410
ApeKI	GCWGC	2 cut(s)	356, 400
ApoI	RAATTY	1 cut(s)	559
AspLEI	GCGC	2 cut(s)	193, 361
AspS9I	GGNCC	2 cut(s)	282, 502
AsuC2I	CCSGG	1 cut(s)	506
AsuHPI	GGTGA	6 cut(s)	197, 280, 385, 461, 469, 535
AvaII	GGWCC	2 cut(s)	282, 502
BaeGI	GKGCMC	1 cut(s)	414
BanI	GGYRCC	1 cut(s)	171
Bbv12I	GWGCWC	3 cut(s)	129, 144, 414
BbvI	GCAGC	2 cut(s)	343, 387
BceAI	ACGGC	2 cut(s)	111, 346
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BcnI	CCSGG	1 cut(s)	506
BcoDI	GTCTC	1 cut(s)	16
BfaI	CTAG	1 cut(s)	515
BfoI	RGCGCY	1 cut(s)	194
BglI	GCCNNNNNGGC	1 cut(s)	95
BisI	GCNGC	2 cut(s)	357, 401
BlsI	GCNGC	2 cut(s)	358, 402
Bme1390I	CCNGG	1 cut(s)	506
Bme18I	GGWCC	2 cut(s)	282, 502
BmgT120I	GGNCC	2 cut(s)	282, 502
BmiI	GGNNCC	3 cut(s)	173, 503, 504
BmrFI	CCNGG	1 cut(s)	506
BmsI	GCATC	2 cut(s)	229, 366
BpuMI	CCSGG	1 cut(s)	506
BsaBI	GATNNNNATC	1 cut(s)	227
BsaJI	CCNNGG	1 cut(s)	546
Bsc4I	CCNNNNNNNGG	6 cut(s)	74, 249, 291, 498, 499, 552
Bse118I	RCCGGY	1 cut(s)	242
Bse8I	GATNNNNATC	1 cut(s)	227
BseDI	CCNNGG	1 cut(s)	546
BseGI	GGATG	2 cut(s)	108, 514
BseJI	GATNNNNATC	1 cut(s)	227
BseLI	CCNNNNNNNGG	6 cut(s)	74, 249, 291, 498, 499, 552
BseMII	CTCAG	1 cut(s)	383
BseRI	GAGGAG	1 cut(s)	409
BseSI	GKGCMC	1 cut(s)	414
BseXI	GCAGC	2 cut(s)	343, 387
BsgI	GTGCAG	1 cut(s)	500
BshFI	GGCC	2 cut(s)	98, 545
BshNI	GGYRCC	1 cut(s)	171
BsiHKAI	GWGCWC	3 cut(s)	129, 144, 414
BsiSI	CCGG	2 cut(s)	243, 506
BsiWI	CGTACG	1 cut(s)	363
BslFI	GGGAC	3 cut(s)	14, 308, 515
BslI	CCNNNNNNNGG	6 cut(s)	74, 249, 291, 498, 499, 552
BsmAI	GTCTC	1 cut(s)	16
BsmBI	CGTCTC	1 cut(s)	16
BsmFI	GGGAC	3 cut(s)	14, 308, 515
BsnI	GGCC	2 cut(s)	98, 545
Bsp1286I	GDGCHC	3 cut(s)	129, 144, 414
Bsp143I	GATC	1 cut(s)	228
Bsp19I	CCATGG	1 cut(s)	546
BspACI	CCGC	3 cut(s)	266, 422, 531
BspANI	GGCC	2 cut(s)	98, 545
BspCNI	CTCAG	1 cut(s)	384
BspLI	GGNNCC	3 cut(s)	173, 503, 504
BspPI	GGATC	1 cut(s)	236
BspT107I	GGYRCC	1 cut(s)	171
BsrFI	RCCGGY	1 cut(s)	242
BssAI	RCCGGY	1 cut(s)	242
BssECI	CCNNGG	1 cut(s)	546
BssMI	GATC	1 cut(s)	228
BssT1I	CCWWGG	1 cut(s)	546
Bst6I	CTCTTC	1 cut(s)	455
BstAPI	GCANNNNNTGC	1 cut(s)	409
BstC8I	GCNNGC	2 cut(s)	244, 483
BstDEI	CTNAG	2 cut(s)	392, 600
BstDSI	CCRYGG	1 cut(s)	546
BstF5I	GGATG	2 cut(s)	108, 514
BstH2I	RGCGCY	1 cut(s)	194
BstHHI	GCGC	2 cut(s)	193, 361
BstKTI	GATC	1 cut(s)	231
BstMAI	GTCTC	1 cut(s)	16
BstMBI	GATC	1 cut(s)	228
BstMWI	GCNNNNNNNGC	5 cut(s)	95, 243, 385, 409, 537
BstNSI	RCATGY	3 cut(s)	278, 407, 439
BstSCI	CCNGG	1 cut(s)	504
BstSLI	GKGCMC	1 cut(s)	414
BstV1I	GCAGC	2 cut(s)	343, 387
BsuRI	GGCC	2 cut(s)	98, 545
BtgI	CCRYGG	1 cut(s)	546
BtgZI	GCGATG	1 cut(s)	252
BtsCI	GGATG	2 cut(s)	108, 514
BtsI	GCAGTG	1 cut(s)	417
BtsIMutI	CAGTG	1 cut(s)	417
Cac8I	GCNNGC	2 cut(s)	244, 483
CfoI	GCGC	2 cut(s)	193, 361
Cfr10I	RCCGGY	1 cut(s)	242
Cfr13I	GGNCC	2 cut(s)	282, 502
Csp6I	GTAC	1 cut(s)	364
CviAII	CATG	5 cut(s)	275, 316, 404, 436, 547
CviJI	RGCY	8 cut(s)	23, 89, 98, 400, 429, 485, 545, 590
CviKI_1	RGCY	8 cut(s)	23, 89, 98, 400, 429, 485, 545, 590
CviQI	GTAC	1 cut(s)	364
DdeI	CTNAG	2 cut(s)	392, 600
DpnI	GATC	1 cut(s)	230
DpnII	GATC	1 cut(s)	228
EaeI	YGGCCR	1 cut(s)	96
Eam1104I	CTCTTC	1 cut(s)	455
EarI	CTCTTC	1 cut(s)	455
Eco130I	CCWWGG	1 cut(s)	546
Eco47I	GGWCC	2 cut(s)	282, 502
EcoO109I	RGGNCCY	1 cut(s)	502
EcoT14I	CCWWGG	1 cut(s)	546
ErhI	CCWWGG	1 cut(s)	546
Esp3I	CGTCTC	1 cut(s)	16
FaeI	CATG	5 cut(s)	278, 319, 407, 439, 550
FaiI	YATR	9 cut(s)	221, 276, 292, 317, 371, 405, 437, 488, 548
FaqI	GGGAC	3 cut(s)	14, 308, 515
FatI	CATG	5 cut(s)	274, 315, 403, 435, 546
FauI	CCCGC	2 cut(s)	415, 524
Fnu4HI	GCNGC	2 cut(s)	357, 401
FokI	GGATG	2 cut(s)	95, 521
Fsp4HI	GCNGC	2 cut(s)	357, 401
FspBI	CTAG	1 cut(s)	515
GlaI	GCGC	2 cut(s)	192, 360
GluI	GCNGC	2 cut(s)	357, 401
HaeII	RGCGCY	1 cut(s)	194
HaeIII	GGCC	2 cut(s)	98, 545
HapII	CCGG	2 cut(s)	243, 506
HhaI	GCGC	2 cut(s)	193, 361
Hin1II	CATG	5 cut(s)	278, 319, 407, 439, 550
Hin6I	GCGC	2 cut(s)	191, 359
HinP1I	GCGC	2 cut(s)	191, 359
HindIII	AAGCTT	1 cut(s)	427
HinfI	GANTC	3 cut(s)	27, 178, 201
HpaII	CCGG	2 cut(s)	243, 506
HphI	GGTGA	6 cut(s)	197, 280, 385, 461, 469, 535
Hpy166II	GTNNAC	2 cut(s)	336, 412
Hpy188I	TCNGA	1 cut(s)	206
Hpy188III	TCNNGA	2 cut(s)	343, 442
Hpy8I	GTNNAC	2 cut(s)	336, 412
Hpy99I	CGWCG	2 cut(s)	326, 329
HpyAV	CCTTC	4 cut(s)	42, 203, 559, 568
HpyCH4V	TGCA	4 cut(s)	379, 403, 412, 481
HpyF10VI	GCNNNNNNNGC	5 cut(s)	95, 243, 385, 409, 537
HpyF3I	CTNAG	2 cut(s)	392, 600
Hsp92II	CATG	5 cut(s)	278, 319, 407, 439, 550
HspAI	GCGC	2 cut(s)	191, 359
KflI	GGGWCCC	1 cut(s)	502
KroI	GCCGGC	1 cut(s)	242
KroNI	GCCGGC	1 cut(s)	244
Kzo9I	GATC	1 cut(s)	228
LmnI	GCTCC	1 cut(s)	212
LpnPI	CCDG	7 cut(s)	37, 126, 188, 256, 467, 484, 519
Lsp1109I	GCAGC	2 cut(s)	343, 387
LweI	GCATC	2 cut(s)	229, 366
MaeI	CTAG	1 cut(s)	515
MaeIII	GTNAC	2 cut(s)	449, 523
MalI	GATC	1 cut(s)	230
MboI	GATC	1 cut(s)	228
MboII	GAAGA	3 cut(s)	358, 361, 472
MfeI	CAATTG	1 cut(s)	474
MhlI	GDGCHC	3 cut(s)	129, 144, 414
MluCI	AATT	3 cut(s)	145, 474, 559
MlyI	GAGTC	2 cut(s)	36, 210
MmeI	TCCRAC	1 cut(s)	62
MroNI	GCCGGC	1 cut(s)	242
MspI	CCGG	2 cut(s)	243, 506
MspR9I	CCNGG	1 cut(s)	506
MunI	CAATTG	1 cut(s)	474
MwoI	GCNNNNNNNGC	5 cut(s)	95, 243, 385, 409, 537
NaeI	GCCGGC	1 cut(s)	244
NciI	CCSGG	1 cut(s)	506
NcoI	CCATGG	1 cut(s)	546
NdeII	GATC	1 cut(s)	228
NgoMIV	GCCGGC	1 cut(s)	242
NlaIII	CATG	5 cut(s)	278, 319, 407, 439, 550
NlaIV	GGNNCC	3 cut(s)	173, 503, 504
NmeAIII	GCCGAG	1 cut(s)	224
NmuCI	GTSAC	2 cut(s)	449, 523
NspI	RCATGY	3 cut(s)	278, 407, 439
PdiI	GCCGGC	1 cut(s)	244
PfeI	GAWTC	1 cut(s)	178
Pfl23II	CGTACG	1 cut(s)	363
PflMI	CCANNNNNTGG	1 cut(s)	74
PkrI	GCNGC	2 cut(s)	358, 402
PleI	GAGTC	2 cut(s)	35, 209
PpsI	GAGTC	2 cut(s)	35, 209
PpuMI	RGGWCCY	1 cut(s)	502
Psp5II	RGGWCCY	1 cut(s)	502
PspLI	CGTACG	1 cut(s)	363
PspN4I	GGNNCC	3 cut(s)	173, 503, 504
PspPI	GGNCC	2 cut(s)	282, 502
PspPPI	RGGWCCY	1 cut(s)	502
RsaI	GTAC	1 cut(s)	365
RsaNI	GTAC	1 cut(s)	364
SatI	GCNGC	2 cut(s)	357, 401
Sau3AI	GATC	1 cut(s)	228
Sau96I	GGNCC	2 cut(s)	282, 502
SchI	GAGTC	2 cut(s)	36, 210
ScrFI	CCNGG	1 cut(s)	506
SduI	GDGCHC	3 cut(s)	129, 144, 414
SetI	ASST	7 cut(s)	44, 333, 431, 520, 525, 579, 587
SfaNI	GCATC	2 cut(s)	229, 366
SinI	GGWCC	2 cut(s)	282, 502
Sse9I	AATT	3 cut(s)	145, 474, 559
SsiI	CCGC	3 cut(s)	266, 422, 531
SspMI	CTAG	1 cut(s)	515
StyD4I	CCNGG	1 cut(s)	504
StyI	CCWWGG	1 cut(s)	546
TaqI	TCGA	2 cut(s)	44, 261
TaqII	GACCGA	1 cut(s)	585
TasI	AATT	3 cut(s)	145, 474, 559
TfiI	GAWTC	1 cut(s)	178
TscAI	CASTG	1 cut(s)	424
TseFI	GTSAC	2 cut(s)	449, 523
TseI	GCWGC	2 cut(s)	356, 400
Tsp45I	GTSAC	2 cut(s)	449, 523
TspDTI	ATGAA	1 cut(s)	99
TspGWI	ACGGA	2 cut(s)	4, 274
TspRI	CASTG	1 cut(s)	424
Van91I	CCANNNNNTGG	1 cut(s)	74
VneI	GTGCAC	1 cut(s)	410
VpaK11BI	GGWCC	2 cut(s)	282, 502
XapI	RAATTY	1 cut(s)	559
XceI	RCATGY	3 cut(s)	278, 407, 439
XspI	CTAG	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.