Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001791.1

Orthogroup ID

OG0003370

Physical Location & Seq

Genomic Coordinates Reverse (-)

52581 .. 53970

Gene Structure 1390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001791.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

atggctcccagtacgtctctgacctctacactgtcaccgccggggccacaacgagtccaggctcaacttgccacaaaggaatgtcgctctcttctgcaagatcatccctccgctcaccaagtacttgccggagaccattttgctgattgtgttgaatccgttgttgtgttgcctttttctatgaatccaagtttgaagcttgaattcaaatgtgaaaatatgtatgtggttctttcaaaccctgtgaacgattgttggaatgtgatatctaatatattatattgcattgacattccattgaagcggggcagggcgattgtgcaggttgtgacccattacaatgacccgaatacacttgctgatgtgagctgtggattgggtgaggctatggttggactgaatttgaatgatgccaaggtcgaaaggtttgtgaatcattccaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0009507 GO:0009536 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046982 GO:0046983 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00750 map00750

Pfam Domains

Protein Families

SOR_SNZ

Protein Analysis

148

Amino Acids

16.21

Weight (kDa)

5.89

Isoelectric Point (pI)

40.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38230 AT5G01410 AT5G01410
fragaria_vesca	FvH4_3g38650 FvH4_6g11420
malus_domestica	MD04G1153300.v1.1 MD11G1073500.v1.1
prunus_persica	Prupe.6G277500_v2.0.a1 Prupe.8G053100_v2.0.a1
pyrus_communis	pycom04g13870 pycom11g06100 pycom12g15860
rosa_chinensis	RchiOBHm_Chr1g0327251 RchiOBHm_Chr3g0463101 RchiOBHm_Chr5g0069681
rosa_laevigata	RLG00000024812 RLG00000036085
rosa_multiflora	Rmu_sc0000738.1_g000036 Rmu_sc0000766.1_g000039 Rmu_sc0001791.1_g000010 Rmu_sc0007688.1_g000003
rosa_roxburghii	Rroxscaffold_1G00011400 Rroxscaffold_6G00416960
rosa_rugosa	Rorug03G0061400 Rorug05G0399200
rosa_samantha	Rh2CG209300 Rh3AG119600 Rh3BG124100 Rh3CG126000 Rh3DG125100 Rh5BG265000 Rh5BG475000 Rh5CG498600 Rh5DG486500
rosa_wichuraiana	Rw3G010120 Rw5G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	313
AccBSI	CCGCTC	1 cut(s)	113
AciI	CCGC	3 cut(s)	38, 111, 304
AcsI	RAATTY	2 cut(s)	203, 400
AfaI	GTAC	2 cut(s)	13, 123
AgsI	TTSAA	7 cut(s)	155, 196, 203, 208, 237, 301, 406
AjnI	CCWGG	1 cut(s)	57
AluBI	AGCT	2 cut(s)	199, 369
AluI	AGCT	2 cut(s)	199, 369
Alw26I	GTCTC	2 cut(s)	21, 126
AoxI	GGCC	1 cut(s)	44
ApoI	RAATTY	2 cut(s)	203, 400
AspS9I	GGNCC	1 cut(s)	44
AsuC2I	CCSGG	1 cut(s)	42
AsuHPI	GGTGA	3 cut(s)	27, 107, 392
BciT130I	CCWGG	1 cut(s)	59
BcnI	CCSGG	1 cut(s)	42
BcoDI	GTCTC	2 cut(s)	21, 126
BfuAI	ACCTGC	1 cut(s)	313
BmcAI	AGTACT	1 cut(s)	123
Bme1390I	CCNGG	2 cut(s)	42, 59
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	2 cut(s)	6, 45
BmrFI	CCNGG	2 cut(s)	42, 59
BmrI	ACTGGG	1 cut(s)	3
BmsI	GCATC	1 cut(s)	400
BmuI	ACTGGG	1 cut(s)	3
BpuMI	CCSGG	1 cut(s)	42
BsaI	GGTCTC	1 cut(s)	126
BsaJI	CCNNGG	2 cut(s)	41, 414
Bse1I	ACTGG	1 cut(s)	9
BseBI	CCWGG	1 cut(s)	59
BseDI	CCNNGG	2 cut(s)	41, 414
BseGI	GGATG	1 cut(s)	103
BseNI	ACTGG	1 cut(s)	9
BsgI	GTGCAG	1 cut(s)	341
BshFI	GGCC	1 cut(s)	46
BsiSI	CCGG	2 cut(s)	41, 129
BsmAI	GTCTC	2 cut(s)	21, 126
BsmBI	CGTCTC	1 cut(s)	21
BsnI	GGCC	1 cut(s)	46
Bso31I	GGTCTC	1 cut(s)	126
Bsp143I	GATC	1 cut(s)	100
BspACI	CCGC	3 cut(s)	38, 111, 304
BspANI	GGCC	1 cut(s)	46
BspLI	GGNNCC	2 cut(s)	6, 45
BspMI	ACCTGC	1 cut(s)	313
BspTNI	GGTCTC	1 cut(s)	126
BsrBI	CCGCTC	1 cut(s)	113
BsrI	ACTGG	1 cut(s)	9
BssECI	CCNNGG	2 cut(s)	41, 414
BssMI	GATC	1 cut(s)	100
BssT1I	CCWWGG	1 cut(s)	414
Bst2UI	CCWGG	1 cut(s)	59
Bst4CI	ACNGT	1 cut(s)	33
Bst6I	CTCTTC	1 cut(s)	96
BstF5I	GGATG	1 cut(s)	103
BstKTI	GATC	1 cut(s)	103
BstMAI	GTCTC	2 cut(s)	21, 126
BstMBI	GATC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstNI	CCWGG	1 cut(s)	59
BstSCI	CCNGG	2 cut(s)	40, 57
BsuRI	GGCC	1 cut(s)	46
BtsCI	GGATG	1 cut(s)	103
BtsIMutI	CAGTG	1 cut(s)	29
BveI	ACCTGC	1 cut(s)	313
Cfr13I	GGNCC	1 cut(s)	44
Csp6I	GTAC	2 cut(s)	12, 122
CviJI	RGCY	6 cut(s)	5, 46, 62, 199, 369, 386
CviKI_1	RGCY	6 cut(s)	5, 46, 62, 199, 369, 386
CviQI	GTAC	2 cut(s)	12, 122
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	414
Eco31I	GGTCTC	1 cut(s)	126
Eco32I	GATATC	1 cut(s)	267
EcoRI	GAATTC	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	57
EcoRV	GATATC	1 cut(s)	267
EcoT14I	CCWWGG	1 cut(s)	414
ErhI	CCWWGG	1 cut(s)	414
Esp3I	CGTCTC	1 cut(s)	21
FaiI	YATR	6 cut(s)	182, 221, 225, 275, 280, 389
FauI	CCCGC	1 cut(s)	297
FokI	GGATG	1 cut(s)	90
HaeIII	GGCC	1 cut(s)	46
HapII	CCGG	2 cut(s)	41, 129
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	4 cut(s)	54, 155, 184, 433
HpaII	CCGG	2 cut(s)	41, 129
HphI	GGTGA	3 cut(s)	27, 107, 392
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	1 cut(s)	21
Hpy8I	GTNNAC	1 cut(s)	247
HpyCH4III	ACNGT	1 cut(s)	33
HpyCH4IV	ACGT	1 cut(s)	14
HpyCH4V	TGCA	3 cut(s)	97, 285, 322
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpySE526I	ACGT	1 cut(s)	14
Kzo9I	GATC	1 cut(s)	100
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	8 cut(s)	22, 44, 54, 71, 142, 255, 295, 308
LweI	GCATC	1 cut(s)	400
MaeII	ACGT	1 cut(s)	14
MaeIII	GTNAC	2 cut(s)	33, 328
MalI	GATC	1 cut(s)	102
MbiI	CCGCTC	1 cut(s)	113
MboI	GATC	1 cut(s)	100
MboII	GAAGA	1 cut(s)	83
MluCI	AATT	2 cut(s)	203, 400
MlyI	GAGTC	1 cut(s)	63
MmeI	TCCRAC	2 cut(s)	236, 373
MnlI	CCTC	3 cut(s)	34, 118, 376
MslI	CAYNNNNRTG	1 cut(s)	339
MspI	CCGG	2 cut(s)	41, 129
MspR9I	CCNGG	2 cut(s)	42, 59
MvaI	CCWGG	1 cut(s)	59
MwoI	GCNNNNNNNGC	1 cut(s)	68
NciI	CCSGG	1 cut(s)	42
NdeII	GATC	1 cut(s)	100
NlaIV	GGNNCC	2 cut(s)	6, 45
NmuCI	GTSAC	2 cut(s)	33, 328
PfeI	GAWTC	3 cut(s)	155, 184, 433
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
Psp6I	CCWGG	1 cut(s)	57
PspGI	CCWGG	1 cut(s)	57
PspN4I	GGNNCC	2 cut(s)	6, 45
PspPI	GGNCC	1 cut(s)	44
RsaI	GTAC	2 cut(s)	13, 123
RsaNI	GTAC	2 cut(s)	12, 122
RseI	CAYNNNNRTG	1 cut(s)	339
Sau3AI	GATC	1 cut(s)	100
Sau96I	GGNCC	1 cut(s)	44
ScaI	AGTACT	1 cut(s)	123
SchI	GAGTC	1 cut(s)	63
ScrFI	CCNGG	2 cut(s)	42, 59
SetI	ASST	7 cut(s)	17, 26, 201, 327, 371, 420, 428
SfaNI	GCATC	1 cut(s)	400
SmiMI	CAYNNNNRTG	1 cut(s)	339
Sse9I	AATT	2 cut(s)	203, 400
SsiI	CCGC	3 cut(s)	38, 111, 304
StyD4I	CCNGG	2 cut(s)	40, 57
StyI	CCWWGG	1 cut(s)	414
TaaI	ACNGT	1 cut(s)	33
TaiI	ACGT	1 cut(s)	17
TaqI	TCGA	1 cut(s)	420
TasI	AATT	2 cut(s)	203, 400
TatI	WGTACW	1 cut(s)	121
TfiI	GAWTC	3 cut(s)	155, 184, 433
TscAI	CASTG	1 cut(s)	36
TseFI	GTSAC	2 cut(s)	33, 328
Tsp45I	GTSAC	2 cut(s)	33, 328
TspDTI	ATGAA	1 cut(s)	197
TspGWI	ACGGA	1 cut(s)	148
TspRI	CASTG	1 cut(s)	36
XapI	RAATTY	2 cut(s)	203, 400
ZrmI	AGTACT	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.