RLG00000036085

Belongs to the PdxS SNZ family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
75603709 .. 75604647
939 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036085

Sequence Viewer

Length: 939 bp
ATGGCCGACAGCGGAGTCGTCACCGTGTACGGCAAGGGCGCCATCTACGAGACCGGCAGCGCCAAGAAGTCCTCCTACCCCGTCAAAGTGGGCCTCGCCCAAATGCTCCGCGGCGGCGTCATCATGGACGTCGTCACCCCCGCCCAGGCCCGCATCGCCGAGGAAGCCGGCGCCTGCGCCGTCATGGCCCTCGAGCGCGTCCCCGCCGATATCCGCGCCCACGGTGGCGTCGCCCGCATGTCCGACCCTCAACTCATCAAAGAGATCAAACGCTCCGTCACCATCCCCGTCATGGCCAAGTGCCGCATCGGCCACTTCGCCGAGGCACAGATCCTCGAGGCCATCGGAGTCGACTACGTCGACGAGTCAGAGGTCCTGACCGTCGCCGACGACGACAACCACATCAACAAGCACGACTTCCAGGTCCCTTTCGTCTGCGGCTGCCGCAACCTCGGCGAGGCCCTCCGCCGCATCCGGGAAGGTGCCGCCATGATCCGGACCAAAGGCGAGGCCGGCACCGGCAACATCGTCGAGGCAGTGAGACATGTCCGGTCGGTCATGGGCGAGGTCCGTGTTTTGCGGAACATGGACGACGACGAGGTCTTCACGTTTGCCAAGAAGATCGCGGCGCCGTACGACATGGTCATGCAGACGAAGCAGATGGGGAGGCTGCCGGTGGTGCACTTCGCCGCCGGAGGGGTGGCGACGCCGGCGGACGCGGCGCTGATGATGCAGTTGGGGTGTGATGGGGTGTTCGTGGGGTCGGGAGTTTTCAAGAGTGGGGAGCCGGCGCGGCGGGCCAGGGCCATTGTGCAGGCGGCGACGCATTATAGTGACCCGGAGGTGCTGGCGGAGGTGAGCTGCGGATTGGGGGAGGCCATGGTGGGGATTAATCTCAGTGACAACAACGCGGAGAGGTATGCTTATAGGTCTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

313

Amino Acids

33.38

Weight (kDa)

6.02

Isoelectric Point (pI)

37.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SOR_SNZ PF01680 28 - 231 2.3e-110 SOR/SNZ family
ThiG PF05690 216 - 273 3.7e-06 Thiazole biosynthesis protein ThiG
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 14, 422, 599
AatII GACGTC 1 cut(s) 132
AbsI CCTCGAGG 1 cut(s) 335
AccB1I GGYRCC 5 cut(s) 38, 170, 482, 515, 628
AccI GTMKAC 2 cut(s) 351, 360
AccII CGCG 7 cut(s) 111, 198, 216, 626, 719, 793, 911
AccIII TCCGGA 1 cut(s) 495
AclWI GGATC 2 cut(s) 325, 487
AcoI YGGCCR 3 cut(s) 3, 294, 310
AcyI GRCGYC 7 cut(s) 39, 117, 129, 171, 228, 629, 707
AfaI GTAC 2 cut(s) 29, 635
AfiI CCNNNNNNNGG 7 cut(s) 145, 292, 457, 475, 495, 696, 885
AflIII ACRYGT 1 cut(s) 544
AgsI TTSAA 1 cut(s) 775
AjnI CCWGG 3 cut(s) 144, 420, 800
AluBI AGCT 1 cut(s) 861
AluI AGCT 1 cut(s) 861
Alw21I GWGCWC 1 cut(s) 684
Alw26I GTCTC 2 cut(s) 44, 535
Alw44I GTGCAC 1 cut(s) 680
AlwI GGATC 2 cut(s) 325, 487
Ama87I CYCGRG 2 cut(s) 191, 335
Aor13HI TCCGGA 1 cut(s) 495
ApaLI GTGCAC 1 cut(s) 680
ApeKI GCWGC 4 cut(s) 57, 441, 670, 861
ArsI GACNNNNNNTTYG 2 cut(s) 261, 293
AseI ATTAAT 1 cut(s) 891
AspLEI GCGC 9 cut(s) 41, 62, 173, 179, 198, 218, 631, 724, 793
AsuC2I CCSGG 2 cut(s) 476, 839
AsuHPI GGTGA 4 cut(s) 13, 127, 271, 868
AvaI CYCGRG 2 cut(s) 191, 335
AvaII GGWCC 4 cut(s) 373, 424, 498, 568
BaeGI GKGCMC 1 cut(s) 684
BalI TGGCCA 1 cut(s) 296
BanI GGYRCC 5 cut(s) 38, 170, 482, 515, 628
BarI GAAGNNNNNNTAC 2 cut(s) 59, 91
BbsI GAAGAC 1 cut(s) 595
Bbv12I GWGCWC 1 cut(s) 684
BbvI GCAGC 4 cut(s) 69, 428, 657, 848
BccI CCATC 5 cut(s) 50, 290, 350, 655, 740
BceAI ACGGC 3 cut(s) 46, 164, 616
BcgI CGANNNNNNTGC 2 cut(s) 511, 545
BciT130I CCWGG 3 cut(s) 146, 422, 802
BcnI CCSGG 2 cut(s) 476, 839
BcoDI GTCTC 2 cut(s) 44, 535
BfoI RGCGCY 5 cut(s) 42, 63, 174, 632, 725
BglI GCCNNNNNGGC 3 cut(s) 185, 309, 793
Bme1390I CCNGG 5 cut(s) 146, 422, 476, 802, 839
Bme18I GGWCC 4 cut(s) 373, 424, 498, 568
BmeT110I CYCGRG 2 cut(s) 191, 335
BmiI GGNNCC 7 cut(s) 40, 172, 426, 484, 517, 630, 786
BmrFI CCNGG 5 cut(s) 146, 422, 476, 802, 839
BmsI GCATC 4 cut(s) 162, 315, 480, 720
BpiI GAAGAC 1 cut(s) 595
BpuMI CCSGG 2 cut(s) 476, 839
BsaHI GRCGYC 7 cut(s) 39, 117, 129, 171, 228, 629, 707
BsaI GGTCTC 1 cut(s) 44
BsaJI CCNNGG 8 cut(s) 109, 144, 159, 220, 321, 451, 801, 879
BsaWI WCCGGW 2 cut(s) 495, 549
Bsc4I CCNNNNNNNGG 7 cut(s) 145, 292, 457, 475, 495, 696, 885
Bse118I RCCGGY 7 cut(s) 53, 167, 512, 518, 673, 709, 787
BseAI TCCGGA 1 cut(s) 495
BseBI CCWGG 3 cut(s) 146, 422, 802
BseDI CCNNGG 8 cut(s) 109, 144, 159, 220, 321, 451, 801, 879
BseGI GGATG 2 cut(s) 282, 471
BseLI CCNNNNNNNGG 7 cut(s) 145, 292, 457, 475, 495, 696, 885
BseMII CTCAG 2 cut(s) 910, 924
BseSI GKGCMC 1 cut(s) 684
BseXI GCAGC 4 cut(s) 69, 428, 657, 848
BsgI GTGCAG 1 cut(s) 833
Bsh1236I CGCG 7 cut(s) 111, 198, 216, 626, 719, 793, 911
Bsh1285I CGRYCG 1 cut(s) 554
BshNI GGYRCC 5 cut(s) 38, 170, 482, 515, 628
BsiEI CGRYCG 1 cut(s) 554
BsiHKAI GWGCWC 1 cut(s) 684
BsiHKCI CYCGRG 2 cut(s) 191, 335
BsiWI CGTACG 1 cut(s) 633
BslFI GGGAC 2 cut(s) 185, 410
BslI CCNNNNNNNGG 7 cut(s) 145, 292, 457, 475, 495, 696, 885
BsmAI GTCTC 2 cut(s) 44, 535
BsmFI GGGAC 2 cut(s) 185, 410
Bso31I GGTCTC 1 cut(s) 44
BsoBI CYCGRG 2 cut(s) 191, 335
Bsp1286I GDGCHC 1 cut(s) 684
Bsp13I TCCGGA 1 cut(s) 495
Bsp143I GATC 4 cut(s) 264, 330, 492, 621
Bsp19I CCATGG 1 cut(s) 879
BspCNI CTCAG 2 cut(s) 909, 925
BspEI TCCGGA 1 cut(s) 495
BspFNI CGCG 7 cut(s) 111, 198, 216, 626, 719, 793, 911
BspLI GGNNCC 7 cut(s) 40, 172, 426, 484, 517, 630, 786
BspPI GGATC 2 cut(s) 325, 487
BspT107I GGYRCC 5 cut(s) 38, 170, 482, 515, 628
BspTNI GGTCTC 1 cut(s) 44
BsrFI RCCGGY 7 cut(s) 53, 167, 512, 518, 673, 709, 787
BssAI RCCGGY 7 cut(s) 53, 167, 512, 518, 673, 709, 787
BssECI CCNNGG 8 cut(s) 109, 144, 159, 220, 321, 451, 801, 879
BssMI GATC 4 cut(s) 264, 330, 492, 621
BssNI GRCGYC 7 cut(s) 39, 117, 129, 171, 228, 629, 707
BssT1I CCWWGG 1 cut(s) 879
Bst2UI CCWGG 3 cut(s) 146, 422, 802
Bst4CI ACNGT 3 cut(s) 25, 224, 382
BstACI GRCGYC 7 cut(s) 39, 117, 129, 171, 228, 629, 707
BstDEI CTNAG 2 cut(s) 896, 933
BstDSI CCRYGG 3 cut(s) 109, 220, 879
BstENI CCTNNNNNAGG 1 cut(s) 455
BstF5I GGATG 2 cut(s) 282, 471
BstFNI CGCG 7 cut(s) 111, 198, 216, 626, 719, 793, 911
BstH2I RGCGCY 5 cut(s) 42, 63, 174, 632, 725
BstHHI GCGC 9 cut(s) 41, 62, 173, 179, 198, 218, 631, 724, 793
BstKTI GATC 4 cut(s) 267, 333, 495, 624
BstMAI GTCTC 2 cut(s) 44, 535
BstMBI GATC 4 cut(s) 264, 330, 492, 621
BstMCI CGRYCG 1 cut(s) 554
BstNI CCWGG 3 cut(s) 146, 422, 802
BstNSI RCATGY 2 cut(s) 241, 548
BstSCI CCNGG 5 cut(s) 144, 420, 474, 800, 837
BstSLI GKGCMC 1 cut(s) 684
BstUI CGCG 7 cut(s) 111, 198, 216, 626, 719, 793, 911
BstV1I GCAGC 4 cut(s) 69, 428, 657, 848
BstV2I GAAGAC 1 cut(s) 595
BstX2I RGATCY 1 cut(s) 330
BstYI RGATCY 1 cut(s) 330
BtgI CCRYGG 3 cut(s) 109, 220, 879
BtgZI GCGATG 1 cut(s) 139
BtsCI GGATG 2 cut(s) 282, 471
BtsI GCAGTG 1 cut(s) 543
BtsIMutI CAGTG 2 cut(s) 543, 904
CfoI GCGC 9 cut(s) 41, 62, 173, 179, 198, 218, 631, 724, 793
Cfr10I RCCGGY 7 cut(s) 53, 167, 512, 518, 673, 709, 787
Cfr42I CCGCGG 1 cut(s) 112
CseI GACGC 6 cut(s) 106, 187, 217, 715, 725, 832
Csp6I GTAC 2 cut(s) 28, 634
CviQI GTAC 2 cut(s) 28, 634
DdeI CTNAG 2 cut(s) 896, 933
DinI GGCGCC 3 cut(s) 40, 172, 630
DpnI GATC 4 cut(s) 266, 332, 494, 623
DpnII GATC 4 cut(s) 264, 330, 492, 621
DrdI GACNNNNNNGTC 3 cut(s) 14, 422, 599
DseDI GACNNNNNNGTC 3 cut(s) 14, 422, 599
EaeI YGGCCR 3 cut(s) 3, 294, 310
EciI GGCGGA 3 cut(s) 455, 728, 866
Eco130I CCWWGG 1 cut(s) 879
Eco31I GGTCTC 1 cut(s) 44
Eco32I GATATC 1 cut(s) 211
Eco47I GGWCC 4 cut(s) 373, 424, 498, 568
Eco88I CYCGRG 2 cut(s) 191, 335
EcoNI CCTNNNNNAGG 1 cut(s) 455
EcoO109I RGGNCCY 3 cut(s) 373, 424, 460
EcoRII CCWGG 3 cut(s) 144, 420, 800
EcoRV GATATC 1 cut(s) 211
EcoT14I CCWWGG 1 cut(s) 879
EgeI GGCGCC 3 cut(s) 40, 172, 630
EheI GGCGCC 3 cut(s) 40, 172, 630
ErhI CCWWGG 1 cut(s) 879
FalI AAGNNNNNCTT 2 cut(s) 401, 433
FaqI GGGAC 2 cut(s) 185, 410
FauI CCCGC 5 cut(s) 148, 158, 211, 242, 789
FblI GTMKAC 2 cut(s) 351, 360
FokI GGATG 2 cut(s) 269, 458
GlaI GCGC 9 cut(s) 40, 61, 172, 178, 197, 217, 630, 723, 792
HaeII RGCGCY 5 cut(s) 42, 63, 174, 632, 725
HgaI GACGC 6 cut(s) 106, 187, 217, 715, 725, 832
HhaI GCGC 9 cut(s) 41, 62, 173, 179, 198, 218, 631, 724, 793
Hin1I GRCGYC 7 cut(s) 39, 117, 129, 171, 228, 629, 707
Hin6I GCGC 9 cut(s) 39, 60, 171, 177, 196, 216, 629, 722, 791
HinP1I GCGC 9 cut(s) 39, 60, 171, 177, 196, 216, 629, 722, 791
HincII GTYRAC 2 cut(s) 352, 361
HindII GTYRAC 2 cut(s) 352, 361
HinfI GANTC 3 cut(s) 15, 348, 365
HphI GGTGA 4 cut(s) 13, 127, 271, 868
Hpy166II GTNNAC 4 cut(s) 28, 352, 361, 682
Hpy188I TCNGA 4 cut(s) 244, 347, 370, 934
Hpy188III TCNNGA 4 cut(s) 376, 496, 765, 775
Hpy8I GTNNAC 4 cut(s) 28, 352, 361, 682
HpyAV CCTTC 1 cut(s) 473
HpyCH4III ACNGT 3 cut(s) 25, 224, 382
HpyCH4IV ACGT 3 cut(s) 129, 357, 608
HpyCH4V TGCA 4 cut(s) 649, 682, 733, 814
HpyF3I CTNAG 2 cut(s) 896, 933
HpySE526I ACGT 3 cut(s) 129, 357, 608
Hsp92I GRCGYC 7 cut(s) 39, 117, 129, 171, 228, 629, 707
HspAI GCGC 9 cut(s) 39, 60, 171, 177, 196, 216, 629, 722, 791
KasI GGCGCC 3 cut(s) 38, 170, 628
Kpn2I TCCGGA 1 cut(s) 495
KroI GCCGGC 4 cut(s) 167, 512, 709, 787
KroNI GCCGGC 4 cut(s) 169, 514, 711, 789
KspI CCGCGG 1 cut(s) 112
Kzo9I GATC 4 cut(s) 264, 330, 492, 621
LmnI GCTCC 3 cut(s) 111, 278, 784
Lsp1109I GCAGC 4 cut(s) 69, 428, 657, 848
LweI GCATC 4 cut(s) 162, 315, 480, 720
MaeII ACGT 3 cut(s) 129, 357, 608
MaeIII GTNAC 5 cut(s) 19, 133, 277, 833, 899
MalI GATC 4 cut(s) 266, 332, 494, 623
MboI GATC 4 cut(s) 264, 330, 492, 621
MboII GAAGA 2 cut(s) 595, 631
MflI RGATCY 1 cut(s) 330
MhlI GDGCHC 1 cut(s) 684
MlsI TGGCCA 1 cut(s) 296
MluNI TGGCCA 1 cut(s) 296
Mly113I GGCGCC 3 cut(s) 39, 171, 629
MlyI GAGTC 3 cut(s) 24, 357, 374
MmeI TCCRAC 1 cut(s) 267
Mox20I TGGCCA 1 cut(s) 296
MreI CGCCGGCG 1 cut(s) 709
MroI TCCGGA 1 cut(s) 495
MroNI GCCGGC 4 cut(s) 167, 512, 709, 787
MscI TGGCCA 1 cut(s) 296
MseI TTAA 1 cut(s) 891
MslI CAYNNNNRTG 2 cut(s) 644, 831
Msp20I TGGCCA 1 cut(s) 296
MspA1I CMGCKG 2 cut(s) 12, 111
MspR9I CCNGG 5 cut(s) 146, 422, 476, 802, 839
MvaI CCWGG 3 cut(s) 146, 422, 802
MvnI CGCG 7 cut(s) 111, 198, 216, 626, 719, 793, 911
NaeI GCCGGC 4 cut(s) 169, 514, 711, 789
NarI GGCGCC 3 cut(s) 39, 171, 629
NciI CCSGG 2 cut(s) 476, 839
NcoI CCATGG 1 cut(s) 879
NdeII GATC 4 cut(s) 264, 330, 492, 621
NgoMIV GCCGGC 4 cut(s) 167, 512, 709, 787
NlaIV GGNNCC 7 cut(s) 40, 172, 426, 484, 517, 630, 786
NmeAIII GCCGAG 3 cut(s) 184, 346, 432
NmuCI GTSAC 5 cut(s) 19, 133, 277, 833, 899
NspI RCATGY 2 cut(s) 241, 548
PaeR7I CTCGAG 2 cut(s) 191, 335
PciI ACATGT 1 cut(s) 544
PcsI WCGNNNNNNNCGW 2 cut(s) 357, 390
PdiI GCCGGC 4 cut(s) 169, 514, 711, 789
Pfl23II CGTACG 1 cut(s) 633
PflFI GACNNNGTC 4 cut(s) 131, 356, 599, 641
PfoI TCCNGGA 1 cut(s) 474
PleI GAGTC 3 cut(s) 23, 356, 373
PluTI GGCGCC 3 cut(s) 42, 174, 632
PpsI GAGTC 3 cut(s) 23, 356, 373
PpuMI RGGWCCY 2 cut(s) 373, 424
PscI ACATGT 1 cut(s) 544
PshBI ATTAAT 1 cut(s) 891
Psp5II RGGWCCY 2 cut(s) 373, 424
Psp6I CCWGG 3 cut(s) 144, 420, 800
PspGI CCWGG 3 cut(s) 144, 420, 800
PspLI CGTACG 1 cut(s) 633
PspN4I GGNNCC 7 cut(s) 40, 172, 426, 484, 517, 630, 786
PspPPI RGGWCCY 2 cut(s) 373, 424
PspXI VCTCGAGB 2 cut(s) 191, 335
PsuI RGATCY 1 cut(s) 330
PsyI GACNNNGTC 4 cut(s) 131, 356, 599, 641
RsaI GTAC 2 cut(s) 29, 635
RsaNI GTAC 2 cut(s) 28, 634
RseI CAYNNNNRTG 2 cut(s) 644, 831
SacII CCGCGG 1 cut(s) 112
SalI GTCGAC 2 cut(s) 350, 359
SaqAI TTAA 1 cut(s) 891
Sau3AI GATC 4 cut(s) 264, 330, 492, 621
SchI GAGTC 3 cut(s) 24, 357, 374
ScrFI CCNGG 5 cut(s) 146, 422, 476, 802, 839
SduI GDGCHC 1 cut(s) 684
SfaNI GCATC 4 cut(s) 162, 315, 480, 720
SfoI GGCGCC 3 cut(s) 40, 172, 630
Sfr274I CTCGAG 2 cut(s) 191, 335
Sfr303I CCGCGG 1 cut(s) 112
SgrAI CRCCGGYG 1 cut(s) 709
SgrBI CCGCGG 1 cut(s) 112
SgrDI CGTCGACG 1 cut(s) 359
SinI GGWCC 4 cut(s) 373, 424, 498, 568
SlaI CTCGAG 2 cut(s) 191, 335
SmiMI CAYNNNNRTG 2 cut(s) 644, 831
SmlI CTYRAG 2 cut(s) 191, 335
SmoI CTYRAG 2 cut(s) 191, 335
SspDI GGCGCC 3 cut(s) 38, 170, 628
StyD4I CCNGG 5 cut(s) 144, 420, 474, 800, 837
StyI CCWWGG 1 cut(s) 879
TaaI ACNGT 3 cut(s) 25, 224, 382
TaiI ACGT 3 cut(s) 132, 360, 611
TaqI TCGA 5 cut(s) 192, 336, 351, 360, 531
TaqII GACCGA 1 cut(s) 544
Tru1I TTAA 1 cut(s) 891
Tru9I TTAA 1 cut(s) 891
TscAI CASTG 2 cut(s) 543, 904
TseFI GTSAC 5 cut(s) 19, 133, 277, 833, 899
TseI GCWGC 4 cut(s) 57, 441, 670, 861
Tsp45I GTSAC 5 cut(s) 19, 133, 277, 833, 899
TspGWI ACGGA 2 cut(s) 265, 560
TspRI CASTG 2 cut(s) 543, 904
Tth111I GACNNNGTC 4 cut(s) 131, 356, 599, 641
VneI GTGCAC 1 cut(s) 680
VpaK11BI GGWCC 4 cut(s) 373, 424, 498, 568
VspI ATTAAT 1 cut(s) 891
XagI CCTNNNNNAGG 1 cut(s) 455
XceI RCATGY 2 cut(s) 241, 548
XcmI CCANNNNNNNNNTGG 1 cut(s) 289
XhoI CTCGAG 2 cut(s) 191, 335
XmiI GTMKAC 2 cut(s) 351, 360
ZraI GACGTC 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.