Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003370

Physical Location & Seq

Genomic Coordinates Reverse (-)

171889 .. 173663

Gene Structure 1775 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G01410.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGAAGGAACCGGCGTTGTGGCGGTGTACGGTAACGGTGCGATAACGGAGGCGAAGAAATCTCCCTTCTCCGTGAAGGTCGGTTTGGCTCAGATGCTCCGTGGTGGTGTTATCATGGATGTCGTCAACGCCGAGCAAGCTCGTATCGCCGAGGAGGCTGGTGCTTGCGCCGTCATGGCTTTGGAGCGTGTTCCTGCTGATATCCGCGCTCAAGGAGGCGTCGCTCGTATGAGCGATCCACAAATGATTAAAGAAATCAAACAAGCCGTTACGATTCCGGTGATGGCTAAGGCTAGGATTGGTCATTTCGTTGAAGCTCAGATCCTTGAAGCAATTGGAATCGATTACATCGATGAGAGCGAGGTTTTGACTCTTGCTGATGAAGATCATCACATCAACAAGCATAATTTCCGGATCCCGTTCGTTTGCGGTTGCCGGAATCTCGGCGAGGCTCTGAGGAGGATCCGTGAAGGTGCGGCGATGATTAGGACCAAAGGTGAAGCTGGAACCGGTAACATTATTGAAGCTGTGAGGCATGTGAGGTCTGTTAATGGTGACATTAGGGTTTTGCGAAACATGGATGATGATGAGGTTTTCACTTTCGCTAAGAAATTAGCCGCTCCGTACGATCTCGTGATGCAGACTAAGCAGCTTGGTCGTCTTCCTGTAGTCCAATTCGCCGCCGGTGGAGTGGCTACTCCGGCTGATGCAGCTCTCATGATGCAGCTTGGATGTGATGGTGTCTTTGTTGGTTCTGGTATCTTCAAGAGCGGTGACCCAGCTCGTCGTGCACGTGCCATTGTTCAGGCTGTGACTCATTACAGTGACCCTGAGATGCTTGTGGAGGTGAGCTGTGGGCTTGGAGAAGCCATGGTTGGGATCAATCTCAACGATGAGAAGGTTGAGAGGTTCGCTAATCGCTCCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006082 GO:0006520 GO:0006725 GO:0006778 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0006982 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009651 GO:0009987 GO:0010033 GO:0010224 GO:0010335 GO:0012505 GO:0015994 GO:0016020 GO:0019752 GO:0033013 GO:0033194 GO:0042221 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046982 GO:0046983 GO:0050896 GO:0051186 GO:0071704 GO:0071944 GO:1901360 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00750 map00750

Pfam Domains

Protein Families

SOR_SNZ

Protein Analysis

309

Amino Acids

33.22

Weight (kDa)

5.79

Isoelectric Point (pI)

38.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SOR_SNZ	PF01680	23 - 228	1.9e-113	SOR/SNZ family
ThiG	PF05690	210 - 272	1.8e-07	Thiazole biosynthesis protein ThiG

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38230 AT5G01410 AT5G01410
fragaria_vesca	FvH4_3g38650 FvH4_6g11420
malus_domestica	MD04G1153300.v1.1 MD11G1073500.v1.1
prunus_persica	Prupe.6G277500_v2.0.a1 Prupe.8G053100_v2.0.a1
pyrus_communis	pycom04g13870 pycom11g06100 pycom12g15860
rosa_chinensis	RchiOBHm_Chr1g0327251 RchiOBHm_Chr3g0463101 RchiOBHm_Chr5g0069681
rosa_laevigata	RLG00000024812 RLG00000036085
rosa_multiflora	Rmu_sc0000738.1_g000036 Rmu_sc0000766.1_g000039 Rmu_sc0001791.1_g000010 Rmu_sc0007688.1_g000003
rosa_roxburghii	Rroxscaffold_1G00011400 Rroxscaffold_6G00416960
rosa_rugosa	Rorug03G0061400 Rorug05G0399200
rosa_samantha	Rh2CG209300 Rh3AG119600 Rh3BG124100 Rh3CG126000 Rh3DG125100 Rh5BG265000 Rh5BG475000 Rh5CG498600 Rh5DG486500
rosa_wichuraiana	Rw3G010120 Rw5G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	620, 771
AccII	CGCG	1 cut(s)	207
AccIII	TCCGGA	1 cut(s)	411
AciI	CCGC	7 cut(s)	23, 205, 429, 476, 618, 681, 771
AclWI	GGATC	7 cut(s)	230, 316, 409, 422, 457, 470, 887
AcvI	CACGTG	1 cut(s)	794
AcyI	GRCGYC	1 cut(s)	219
AfaI	GTAC	2 cut(s)	29, 626
AfiI	CCNNNNNNNGG	1 cut(s)	876
AgeI	ACCGGT	1 cut(s)	509
AgsI	TTSAA	4 cut(s)	314, 329, 524, 766
AjuI	GAANNNNNNNTTGG	4 cut(s)	68, 100, 858, 890
AluBI	AGCT	9 cut(s)	140, 317, 503, 527, 652, 713, 727, 782, 852
AluI	AGCT	9 cut(s)	140, 317, 503, 527, 652, 713, 727, 782, 852
Alw21I	GWGCWC	1 cut(s)	793
Alw44I	GTGCAC	1 cut(s)	789
AlwI	GGATC	7 cut(s)	230, 316, 409, 422, 457, 470, 887
Aor13HI	TCCGGA	1 cut(s)	411
ApaLI	GTGCAC	1 cut(s)	789
ApeKI	GCWGC	3 cut(s)	649, 710, 724
AsiGI	ACCGGT	1 cut(s)	509
AspLEI	GCGC	2 cut(s)	170, 209
AspS9I	GGNCC	1 cut(s)	489
AsuHPI	GGTGA	5 cut(s)	292, 509, 566, 785, 859
AvaII	GGWCC	1 cut(s)	489
BaeGI	GKGCMC	1 cut(s)	793
BamHI	GGATCC	2 cut(s)	414, 462
BauI	CACGAG	1 cut(s)	632
BbrPI	CACGTG	1 cut(s)	794
BbsI	GAAGAC	1 cut(s)	653
Bbv12I	GWGCWC	1 cut(s)	793
BbvI	GCAGC	3 cut(s)	661, 722, 736
BccI	CCATC	2 cut(s)	277, 731
BceAI	ACGGC	2 cut(s)	155, 251
BcgI	CGANNNNNNTGC	2 cut(s)	638, 672
BfaI	CTAG	1 cut(s)	294
BfmI	CTRYAG	1 cut(s)	666
BglI	GCCNNNNNGGC	2 cut(s)	155, 176
BisI	GCNGC	6 cut(s)	477, 618, 650, 681, 711, 725
BlsI	GCNGC	6 cut(s)	478, 619, 651, 682, 712, 726
Bme18I	GGWCC	1 cut(s)	489
BmgT120I	GGNCC	1 cut(s)	489
BmiI	GGNNCC	4 cut(s)	10, 416, 464, 508
BmsI	GCATC	5 cut(s)	84, 627, 697, 711, 825
BpiI	GAAGAC	1 cut(s)	653
Bpu10I	CCTNAGC	1 cut(s)	288
BpuEI	CTTGAG	1 cut(s)	195
Bsa29I	ATCGAT	2 cut(s)	342, 351
BsaAI	YACGTR	1 cut(s)	794
BsaBI	GATNNNNATC	1 cut(s)	384
BsaHI	GRCGYC	1 cut(s)	219
BsaJI	CCNNGG	3 cut(s)	100, 150, 870
BsaWI	WCCGGW	3 cut(s)	277, 411, 509
BsaXI	ACNNNNNCTCC	2 cut(s)	451, 481
Bsc4I	CCNNNNNNNGG	1 cut(s)	876
Bse118I	RCCGGY	3 cut(s)	11, 509, 683
Bse8I	GATNNNNATC	1 cut(s)	384
BseAI	TCCGGA	1 cut(s)	411
BseCI	ATCGAT	2 cut(s)	342, 351
BseDI	CCNNGG	3 cut(s)	100, 150, 870
BseGI	GGATG	3 cut(s)	124, 586, 737
BseJI	GATNNNNATC	1 cut(s)	384
BseLI	CCNNNNNNNGG	1 cut(s)	876
BseMII	CTCAG	4 cut(s)	104, 332, 446, 822
BseRI	GAGGAG	2 cut(s)	167, 472
BseSI	GKGCMC	1 cut(s)	793
BseXI	GCAGC	3 cut(s)	661, 722, 736
BseYI	CCCAGC	1 cut(s)	778
Bsh1236I	CGCG	1 cut(s)	207
BshTI	ACCGGT	1 cut(s)	509
BshVI	ATCGAT	2 cut(s)	342, 351
BsiHKAI	GWGCWC	1 cut(s)	793
BsiSI	CCGG	7 cut(s)	12, 278, 412, 436, 510, 684, 701
BsiWI	CGTACG	1 cut(s)	624
BslI	CCNNNNNNNGG	1 cut(s)	876
Bsp1286I	GDGCHC	1 cut(s)	793
Bsp13I	TCCGGA	1 cut(s)	411
Bsp143I	GATC	7 cut(s)	235, 321, 385, 414, 462, 628, 879
Bsp19I	CCATGG	1 cut(s)	870
BspACI	CCGC	7 cut(s)	23, 205, 429, 476, 618, 681, 771
BspCNI	CTCAG	4 cut(s)	103, 331, 447, 823
BspDI	ATCGAT	2 cut(s)	342, 351
BspEI	TCCGGA	1 cut(s)	411
BspFNI	CGCG	1 cut(s)	207
BspHI	TCATGA	1 cut(s)	717
BspLI	GGNNCC	4 cut(s)	10, 416, 464, 508
BspPI	GGATC	7 cut(s)	230, 316, 409, 422, 457, 470, 887
BsrBI	CCGCTC	2 cut(s)	620, 771
BsrFI	RCCGGY	3 cut(s)	11, 509, 683
BssAI	RCCGGY	3 cut(s)	11, 509, 683
BssECI	CCNNGG	3 cut(s)	100, 150, 870
BssMI	GATC	7 cut(s)	235, 321, 385, 414, 462, 628, 879
BssNI	GRCGYC	1 cut(s)	219
BssSI	CACGAG	1 cut(s)	632
BssT1I	CCWWGG	1 cut(s)	870
Bst2BI	CACGAG	1 cut(s)	632
Bst4CI	ACNGT	3 cut(s)	32, 38, 824
BstACI	GRCGYC	1 cut(s)	219
BstBAI	YACGTR	1 cut(s)	794
BstC8I	GCNNGC	2 cut(s)	138, 166
BstDEI	CTNAG	7 cut(s)	90, 288, 318, 455, 606, 645, 831
BstDSI	CCRYGG	2 cut(s)	100, 870
BstEII	GGTNACC	1 cut(s)	773
BstF5I	GGATG	3 cut(s)	124, 586, 737
BstFNI	CGCG	1 cut(s)	207
BstHHI	GCGC	2 cut(s)	170, 209
BstKTI	GATC	7 cut(s)	238, 324, 388, 417, 465, 631, 882
BstMBI	GATC	7 cut(s)	235, 321, 385, 414, 462, 628, 879
BstMWI	GCNNNNNNNGC	8 cut(s)	137, 146, 155, 176, 646, 701, 710, 788
BstNSI	RCATGY	1 cut(s)	539
BstPI	GGTNACC	1 cut(s)	773
BstSFI	CTRYAG	1 cut(s)	666
BstSLI	GKGCMC	1 cut(s)	793
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	3 cut(s)	661, 722, 736
BstV2I	GAAGAC	1 cut(s)	653
BstX2I	RGATCY	3 cut(s)	321, 414, 462
BstYI	RGATCY	3 cut(s)	321, 414, 462
Bsu15I	ATCGAT	2 cut(s)	342, 351
BsuTUI	ATCGAT	2 cut(s)	342, 351
BtgI	CCRYGG	2 cut(s)	100, 870
BtgZI	GCGATG	1 cut(s)	494
BtsCI	GGATG	3 cut(s)	124, 586, 737
BtsIMutI	CAGTG	1 cut(s)	829
Cac8I	GCNNGC	2 cut(s)	138, 166
CciI	TCATGA	1 cut(s)	717
CfoI	GCGC	2 cut(s)	170, 209
Cfr10I	RCCGGY	3 cut(s)	11, 509, 683
Cfr13I	GGNCC	1 cut(s)	489
ClaI	ATCGAT	2 cut(s)	342, 351
CseI	GACGC	1 cut(s)	208
Csp6I	GTAC	2 cut(s)	28, 625
CspAI	ACCGGT	1 cut(s)	509
CviAII	CATG	6 cut(s)	115, 175, 536, 577, 718, 871
CviQI	GTAC	2 cut(s)	28, 625
DdeI	CTNAG	7 cut(s)	90, 288, 318, 455, 606, 645, 831
DpnI	GATC	7 cut(s)	237, 323, 387, 416, 464, 630, 881
DpnII	GATC	7 cut(s)	235, 321, 385, 414, 462, 628, 879
Eco130I	CCWWGG	1 cut(s)	870
Eco32I	GATATC	1 cut(s)	202
Eco47I	GGWCC	1 cut(s)	489
Eco72I	CACGTG	1 cut(s)	794
Eco91I	GGTNACC	1 cut(s)	773
EcoO65I	GGTNACC	1 cut(s)	773
EcoRV	GATATC	1 cut(s)	202
EcoT14I	CCWWGG	1 cut(s)	870
ErhI	CCWWGG	1 cut(s)	870
FaeI	CATG	6 cut(s)	118, 178, 539, 580, 721, 874
FaiI	YATR	8 cut(s)	116, 176, 230, 405, 537, 578, 719, 872
FatI	CATG	6 cut(s)	114, 174, 535, 576, 717, 870
Fnu4HI	GCNGC	6 cut(s)	477, 618, 650, 681, 711, 725
FokI	GGATG	3 cut(s)	131, 593, 744
Fsp4HI	GCNGC	6 cut(s)	477, 618, 650, 681, 711, 725
FspBI	CTAG	1 cut(s)	294
GlaI	GCGC	2 cut(s)	169, 208
GluI	GCNGC	6 cut(s)	477, 618, 650, 681, 711, 725
GsaI	CCCAGC	1 cut(s)	782
HapII	CCGG	7 cut(s)	12, 278, 412, 436, 510, 684, 701
HgaI	GACGC	1 cut(s)	208
HhaI	GCGC	2 cut(s)	170, 209
Hin1I	GRCGYC	1 cut(s)	219
Hin1II	CATG	6 cut(s)	118, 178, 539, 580, 721, 874
Hin6I	GCGC	2 cut(s)	168, 207
HinP1I	GCGC	2 cut(s)	168, 207
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HinfI	GANTC	5 cut(s)	274, 339, 370, 439, 814
HpaII	CCGG	7 cut(s)	12, 278, 412, 436, 510, 684, 701
HphI	GGTGA	5 cut(s)	292, 509, 566, 785, 859
Hpy166II	GTNNAC	3 cut(s)	28, 127, 791
Hpy188I	TCNGA	4 cut(s)	93, 321, 456, 925
Hpy188III	TCNNGA	4 cut(s)	412, 634, 718, 766
Hpy8I	GTNNAC	3 cut(s)	28, 127, 791
Hpy99I	CGWCG	2 cut(s)	224, 789
HpyAV	CCTTC	4 cut(s)	70, 76, 464, 892
HpyCH4III	ACNGT	3 cut(s)	32, 38, 824
HpyCH4IV	ACGT	1 cut(s)	793
HpyCH4V	TGCA	4 cut(s)	640, 710, 724, 791
HpyF10VI	GCNNNNNNNGC	8 cut(s)	137, 146, 155, 176, 646, 701, 710, 788
HpyF3I	CTNAG	7 cut(s)	90, 288, 318, 455, 606, 645, 831
HpySE526I	ACGT	1 cut(s)	793
Hsp92I	GRCGYC	1 cut(s)	219
Hsp92II	CATG	6 cut(s)	118, 178, 539, 580, 721, 874
HspAI	GCGC	2 cut(s)	168, 207
Kpn2I	TCCGGA	1 cut(s)	411
Kzo9I	GATC	7 cut(s)	235, 321, 385, 414, 462, 628, 879
LmnI	GCTCC	4 cut(s)	102, 184, 625, 926
Lsp1109I	GCAGC	3 cut(s)	661, 722, 736
LweI	GCATC	5 cut(s)	84, 627, 697, 711, 825
MaeI	CTAG	1 cut(s)	294
MaeII	ACGT	1 cut(s)	793
MaeIII	GTNAC	7 cut(s)	32, 268, 512, 554, 773, 811, 824
MalI	GATC	7 cut(s)	237, 323, 387, 416, 464, 630, 881
MbiI	CCGCTC	2 cut(s)	620, 771
MboI	GATC	7 cut(s)	235, 321, 385, 414, 462, 628, 879
MboII	GAAGA	4 cut(s)	67, 395, 653, 754
MfeI	CAATTG	1 cut(s)	333
MflI	RGATCY	3 cut(s)	321, 414, 462
MhlI	GDGCHC	1 cut(s)	793
MluCI	AATT	4 cut(s)	333, 406, 611, 674
MlyI	GAGTC	2 cut(s)	364, 808
MroI	TCCGGA	1 cut(s)	411
MseI	TTAA	2 cut(s)	249, 549
MslI	CAYNNNNRTG	1 cut(s)	822
MspI	CCGG	7 cut(s)	12, 278, 412, 436, 510, 684, 701
MunI	CAATTG	1 cut(s)	333
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	8 cut(s)	137, 146, 155, 176, 646, 701, 710, 788
NcoI	CCATGG	1 cut(s)	870
NdeII	GATC	7 cut(s)	235, 321, 385, 414, 462, 628, 879
NlaIII	CATG	6 cut(s)	118, 178, 539, 580, 721, 874
NlaIV	GGNNCC	4 cut(s)	10, 416, 464, 508
NmeAIII	GCCGAG	3 cut(s)	157, 175, 423
NmuCI	GTSAC	4 cut(s)	554, 773, 811, 824
NspI	RCATGY	1 cut(s)	539
PagI	TCATGA	1 cut(s)	717
PcsI	WCGNNNNNNNCGW	4 cut(s)	129, 348, 357, 790
PfeI	GAWTC	3 cut(s)	274, 339, 439
Pfl23II	CGTACG	1 cut(s)	624
PinAI	ACCGGT	1 cut(s)	509
PkrI	GCNGC	6 cut(s)	478, 619, 651, 682, 712, 726
PleI	GAGTC	2 cut(s)	364, 808
PmaCI	CACGTG	1 cut(s)	794
PmlI	CACGTG	1 cut(s)	794
PpsI	GAGTC	2 cut(s)	364, 808
Ppu21I	YACGTR	1 cut(s)	794
PspCI	CACGTG	1 cut(s)	794
PspEI	GGTNACC	1 cut(s)	773
PspFI	CCCAGC	1 cut(s)	778
PspLI	CGTACG	1 cut(s)	624
PspN4I	GGNNCC	4 cut(s)	10, 416, 464, 508
PspPI	GGNCC	1 cut(s)	489
PsuI	RGATCY	3 cut(s)	321, 414, 462
RsaI	GTAC	2 cut(s)	29, 626
RsaNI	GTAC	2 cut(s)	28, 625
RseI	CAYNNNNRTG	1 cut(s)	822
SaqAI	TTAA	2 cut(s)	249, 549
SatI	GCNGC	6 cut(s)	477, 618, 650, 681, 711, 725
Sau3AI	GATC	7 cut(s)	235, 321, 385, 414, 462, 628, 879
Sau96I	GGNCC	1 cut(s)	489
SchI	GAGTC	2 cut(s)	364, 808
SduI	GDGCHC	1 cut(s)	793
SfaNI	GCATC	5 cut(s)	84, 627, 697, 711, 825
SfcI	CTRYAG	1 cut(s)	666
SgrAI	CRCCGGYG	1 cut(s)	683
SinI	GGWCC	1 cut(s)	489
SmiMI	CAYNNNNRTG	1 cut(s)	822
SmlI	CTYRAG	1 cut(s)	210
SmoI	CTYRAG	1 cut(s)	210
Sse9I	AATT	4 cut(s)	333, 406, 611, 674
SsiI	CCGC	7 cut(s)	23, 205, 429, 476, 618, 681, 771
SspMI	CTAG	1 cut(s)	294
StyI	CCWWGG	1 cut(s)	870
TaaI	ACNGT	3 cut(s)	32, 38, 824
TaiI	ACGT	1 cut(s)	796
TaqI	TCGA	2 cut(s)	342, 351
TasI	AATT	4 cut(s)	333, 406, 611, 674
TauI	GCSGC	3 cut(s)	479, 620, 683
TfiI	GAWTC	3 cut(s)	274, 339, 439
Tru1I	TTAA	2 cut(s)	249, 549
Tru9I	TTAA	2 cut(s)	249, 549
TscAI	CASTG	1 cut(s)	829
TseFI	GTSAC	4 cut(s)	554, 773, 811, 824
TseI	GCWGC	3 cut(s)	649, 710, 724
Tsp45I	GTSAC	4 cut(s)	554, 773, 811, 824
TspDTI	ATGAA	1 cut(s)	396
TspGWI	ACGGA	5 cut(s)	61, 62, 89, 455, 612
TspRI	CASTG	1 cut(s)	829
VneI	GTGCAC	1 cut(s)	789
VpaK11BI	GGWCC	1 cut(s)	489
XceI	RCATGY	1 cut(s)	539
XspI	CTAG	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.