Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0003370

Physical Location & Seq

Genomic Coordinates Reverse (-)

6229980 .. 6233148

Gene Structure 3169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1073500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGATGCAGACGAAGCAGGTCGGGAGGCTGCCGGTGGTGCATTTTGCCGCCGGCGGCGTGGCGACTCCCGCAGACGCGGCGCTGATGATGCAGTTGGGGTGCGACGGGGTTTTCGTCGGGTCGGGTGTGTTCAAGAGCAGCGACCCGGCCCGGAGAGCCCGGGCGATTGTGCAGGCTTCGACCCATTACAGTGACCCGGATGTGCTGGCGGACATCAGCTGCGGATTGGGCGAGGCAATGGCCGGGATTAATCTGAACGACGAGAAGGTCGAGAGAAAGAGTAGGGAATGTGGAGGGCTGGGAATTAAAGTTTTCAAGAGCACAGATTCTGACATTGCTGCAAAGCCAGTCCTAAGAATCTCTAGCCAAATATGTTCTTTTCGGGAGATGCTAAACATTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00750 map00750

Pfam Domains

Protein Families

SOR_SNZ ThiG

Protein Analysis

135

Amino Acids

14.16

Weight (kDa)

7.63

Isoelectric Point (pI)

35.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ThiG	PF05690	9 - 59	4.2e-07	Thiazole biosynthesis protein ThiG

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38230 AT5G01410 AT5G01410
fragaria_vesca	FvH4_3g38650 FvH4_6g11420
malus_domestica	MD04G1153300.v1.1 MD11G1073500.v1.1
prunus_persica	Prupe.6G277500_v2.0.a1 Prupe.8G053100_v2.0.a1
pyrus_communis	pycom04g13870 pycom11g06100 pycom12g15860
rosa_chinensis	RchiOBHm_Chr1g0327251 RchiOBHm_Chr3g0463101 RchiOBHm_Chr5g0069681
rosa_laevigata	RLG00000024812 RLG00000036085
rosa_multiflora	Rmu_sc0000738.1_g000036 Rmu_sc0000766.1_g000039 Rmu_sc0001791.1_g000010 Rmu_sc0007688.1_g000003
rosa_roxburghii	Rroxscaffold_1G00011400 Rroxscaffold_6G00416960
rosa_rugosa	Rorug03G0061400 Rorug05G0399200
rosa_samantha	Rh2CG209300 Rh3AG119600 Rh3BG124100 Rh3CG126000 Rh3DG125100 Rh5BG265000 Rh5BG475000 Rh5CG498600 Rh5DG486500
rosa_wichuraiana	Rw3G010120 Rw5G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	266
Acc36I	ACCTGC	1 cut(s)	7
AccII	CGCG	1 cut(s)	77
AciI	CCGC	6 cut(s)	48, 54, 69, 77, 209, 222
AcoI	YGGCCR	1 cut(s)	240
AgsI	TTSAA	2 cut(s)	133, 316
AluBI	AGCT	1 cut(s)	219
AluI	AGCT	1 cut(s)	219
Alw21I	GWGCWC	1 cut(s)	323
AlwNI	CAGNNNCTG	1 cut(s)	329
Ama87I	CYCGRG	1 cut(s)	159
AoxI	GGCC	2 cut(s)	147, 240
ApeKI	GCWGC	4 cut(s)	28, 138, 219, 338
ArsI	GACNNNNNNTTYG	2 cut(s)	95, 127
AseI	ATTAAT	1 cut(s)	249
AspLEI	GCGC	1 cut(s)	82
AspS9I	GGNCC	1 cut(s)	148
AsuC2I	CCSGG	6 cut(s)	146, 151, 160, 161, 197, 244
AvaI	CYCGRG	1 cut(s)	159
BanII	GRGCYC	1 cut(s)	160
Bbv12I	GWGCWC	1 cut(s)	323
BbvI	GCAGC	4 cut(s)	15, 150, 206, 325
BcnI	CCSGG	6 cut(s)	146, 151, 160, 161, 197, 244
BfaI	CTAG	1 cut(s)	363
BfoI	RGCGCY	1 cut(s)	83
BfuAI	ACCTGC	1 cut(s)	7
BisI	GCNGC	7 cut(s)	29, 48, 55, 78, 139, 220, 339
BlsI	GCNGC	7 cut(s)	30, 49, 56, 79, 140, 221, 340
Bme1390I	CCNGG	6 cut(s)	146, 151, 160, 161, 197, 244
BmeT110I	CYCGRG	1 cut(s)	159
BmgT120I	GGNCC	1 cut(s)	148
BmrFI	CCNGG	6 cut(s)	146, 151, 160, 161, 197, 244
BmsI	GCATC	2 cut(s)	78, 378
BpuMI	CCSGG	6 cut(s)	146, 151, 160, 161, 197, 244
BsaJI	CCNNGG	1 cut(s)	159
Bse118I	RCCGGY	2 cut(s)	31, 50
Bse1I	ACTGG	1 cut(s)	347
Bse3DI	GCAATG	2 cut(s)	243, 333
BseDI	CCNNGG	1 cut(s)	159
BseGI	GGATG	1 cut(s)	205
BseMI	GCAATG	2 cut(s)	243, 333
BseNI	ACTGG	1 cut(s)	347
BseXI	GCAGC	4 cut(s)	15, 150, 206, 325
BseYI	CCCAGC	1 cut(s)	298
BsgI	GTGCAG	1 cut(s)	191
Bsh1236I	CGCG	1 cut(s)	77
BshFI	GGCC	2 cut(s)	149, 242
BsiHKAI	GWGCWC	1 cut(s)	323
BsiHKCI	CYCGRG	1 cut(s)	159
BsiSI	CCGG	7 cut(s)	32, 51, 146, 151, 160, 197, 243
BsnI	GGCC	2 cut(s)	149, 242
BsoBI	CYCGRG	1 cut(s)	159
Bsp1286I	GDGCHC	2 cut(s)	160, 323
BspACI	CCGC	6 cut(s)	48, 54, 69, 77, 209, 222
BspANI	GGCC	2 cut(s)	149, 242
BspFNI	CGCG	1 cut(s)	77
BspMI	ACCTGC	1 cut(s)	7
BsrDI	GCAATG	2 cut(s)	243, 333
BsrFI	RCCGGY	2 cut(s)	31, 50
BsrI	ACTGG	1 cut(s)	347
BssAI	RCCGGY	2 cut(s)	31, 50
BssECI	CCNNGG	1 cut(s)	159
Bst4CI	ACNGT	1 cut(s)	191
BstC8I	GCNNGC	3 cut(s)	52, 174, 207
BstDEI	CTNAG	1 cut(s)	353
BstF5I	GGATG	1 cut(s)	205
BstFNI	CGCG	1 cut(s)	77
BstH2I	RGCGCY	1 cut(s)	83
BstHHI	GCGC	1 cut(s)	82
BstMWI	GCNNNNNNNGC	7 cut(s)	13, 37, 68, 77, 88, 155, 228
BstSCI	CCNGG	6 cut(s)	144, 149, 158, 159, 195, 242
BstUI	CGCG	1 cut(s)	77
BstV1I	GCAGC	4 cut(s)	15, 150, 206, 325
BsuRI	GGCC	2 cut(s)	149, 242
BtsCI	GGATG	1 cut(s)	205
BtsIMutI	CAGTG	1 cut(s)	196
BveI	ACCTGC	1 cut(s)	7
Cac8I	GCNNGC	3 cut(s)	52, 174, 207
CaiI	CAGNNNCTG	1 cut(s)	329
CfoI	GCGC	1 cut(s)	82
Cfr10I	RCCGGY	2 cut(s)	31, 50
Cfr13I	GGNCC	1 cut(s)	148
Cfr9I	CCCGGG	1 cut(s)	159
CseI	GACGC	1 cut(s)	83
CviJI	RGCY	9 cut(s)	28, 149, 158, 176, 219, 242, 298, 346, 366
CviKI_1	RGCY	9 cut(s)	28, 149, 158, 176, 219, 242, 298, 346, 366
DdeI	CTNAG	1 cut(s)	353
DrdI	GACNNNNNNGTC	1 cut(s)	266
DseDI	GACNNNNNNGTC	1 cut(s)	266
EaeI	YGGCCR	1 cut(s)	240
EciI	GGCGGA	1 cut(s)	224
Eco24I	GRGCYC	1 cut(s)	160
Eco88I	CYCGRG	1 cut(s)	159
EcoT38I	GRGCYC	1 cut(s)	160
FaiI	YATR	1 cut(s)	373
FauI	CCCGC	1 cut(s)	76
Fnu4HI	GCNGC	7 cut(s)	29, 48, 55, 78, 139, 220, 339
FokI	GGATG	1 cut(s)	212
FriOI	GRGCYC	1 cut(s)	160
Fsp4HI	GCNGC	7 cut(s)	29, 48, 55, 78, 139, 220, 339
FspBI	CTAG	1 cut(s)	363
GlaI	GCGC	1 cut(s)	81
GluI	GCNGC	7 cut(s)	29, 48, 55, 78, 139, 220, 339
GsaI	CCCAGC	1 cut(s)	302
HaeII	RGCGCY	1 cut(s)	83
HaeIII	GGCC	2 cut(s)	149, 242
HapII	CCGG	7 cut(s)	32, 51, 146, 151, 160, 197, 243
HgaI	GACGC	1 cut(s)	83
HhaI	GCGC	1 cut(s)	82
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HinfI	GANTC	3 cut(s)	64, 326, 357
HpaII	CCGG	7 cut(s)	32, 51, 146, 151, 160, 197, 243
Hpy188I	TCNGA	2 cut(s)	255, 331
Hpy188III	TCNNGA	5 cut(s)	22, 133, 271, 316, 383
Hpy99I	CGWCG	3 cut(s)	107, 119, 263
HpyAV	CCTTC	1 cut(s)	259
HpyCH4III	ACNGT	1 cut(s)	191
HpyCH4V	TGCA	5 cut(s)	7, 40, 91, 172, 341
HpyF10VI	GCNNNNNNNGC	7 cut(s)	13, 37, 68, 77, 88, 155, 228
HpyF3I	CTNAG	1 cut(s)	353
HspAI	GCGC	1 cut(s)	80
KroI	GCCGGC	1 cut(s)	50
KroNI	GCCGGC	1 cut(s)	52
Lsp1109I	GCAGC	4 cut(s)	15, 150, 206, 325
LweI	GCATC	2 cut(s)	78, 378
MaeI	CTAG	1 cut(s)	363
MaeIII	GTNAC	1 cut(s)	191
MhlI	GDGCHC	2 cut(s)	160, 323
MluCI	AATT	1 cut(s)	303
MlyI	GAGTC	1 cut(s)	58
MnlI	CCTC	3 cut(s)	18, 226, 287
MreI	CGCCGGCG	1 cut(s)	50
MroNI	GCCGGC	1 cut(s)	50
MseI	TTAA	2 cut(s)	249, 306
MslI	CAYNNNNRTG	1 cut(s)	189
MspA1I	CMGCKG	1 cut(s)	219
MspI	CCGG	7 cut(s)	32, 51, 146, 151, 160, 197, 243
MspR9I	CCNGG	6 cut(s)	146, 151, 160, 161, 197, 244
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	7 cut(s)	13, 37, 68, 77, 88, 155, 228
NaeI	GCCGGC	1 cut(s)	52
NciI	CCSGG	6 cut(s)	146, 151, 160, 161, 197, 244
NgoMIV	GCCGGC	1 cut(s)	50
NmuCI	GTSAC	1 cut(s)	191
PcsI	WCGNNNNNNNCGW	2 cut(s)	111, 267
PdiI	GCCGGC	1 cut(s)	52
PfeI	GAWTC	2 cut(s)	326, 357
PkrI	GCNGC	7 cut(s)	30, 49, 56, 79, 140, 221, 340
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
PshBI	ATTAAT	1 cut(s)	249
PspFI	CCCAGC	1 cut(s)	298
PspPI	GGNCC	1 cut(s)	148
PstNI	CAGNNNCTG	1 cut(s)	329
PvuII	CAGCTG	1 cut(s)	219
RseI	CAYNNNNRTG	1 cut(s)	189
SaqAI	TTAA	2 cut(s)	249, 306
SatI	GCNGC	7 cut(s)	29, 48, 55, 78, 139, 220, 339
Sau96I	GGNCC	1 cut(s)	148
SchI	GAGTC	1 cut(s)	58
ScrFI	CCNGG	6 cut(s)	146, 151, 160, 161, 197, 244
SduI	GDGCHC	2 cut(s)	160, 323
SetI	ASST	3 cut(s)	21, 221, 270
SfaNI	GCATC	2 cut(s)	78, 378
SgrAI	CRCCGGYG	1 cut(s)	50
SmaI	CCCGGG	1 cut(s)	161
SmiMI	CAYNNNNRTG	1 cut(s)	189
SrfI	GCCCGGGC	1 cut(s)	161
Sse9I	AATT	1 cut(s)	303
SsiI	CCGC	6 cut(s)	48, 54, 69, 77, 209, 222
SspMI	CTAG	1 cut(s)	363
StyD4I	CCNGG	6 cut(s)	144, 149, 158, 159, 195, 242
TaaI	ACNGT	1 cut(s)	191
TaqI	TCGA	2 cut(s)	179, 270
TasI	AATT	1 cut(s)	303
TauI	GCSGC	3 cut(s)	50, 57, 80
TfiI	GAWTC	2 cut(s)	326, 357
Tru1I	TTAA	2 cut(s)	249, 306
Tru9I	TTAA	2 cut(s)	249, 306
TscAI	CASTG	1 cut(s)	196
TseFI	GTSAC	1 cut(s)	191
TseI	GCWGC	4 cut(s)	28, 138, 219, 338
Tsp45I	GTSAC	1 cut(s)	191
TspMI	CCCGGG	1 cut(s)	159
TspRI	CASTG	1 cut(s)	196
VspI	ATTAAT	1 cut(s)	249
XmaI	CCCGGG	1 cut(s)	159
XspI	CTAG	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.