Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006546

Physical Location & Seq

Genomic Coordinates Forward (+)

16873345 .. 16875692

Gene Structure 2348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G40410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGGTAACGCTCTTACGTTTCTCTACGGAAAATGCTGCAAACCCACAACAACCGATGACTCTCTTGGTCCTCACGGCGTCTCCGCCGCCACCGTCGGTGTTTCAGCTCTCGCTCACGATCTCTTCAACTTCGAGATCACTTCCCAGGTTCCTGAAGGGCTTGGGAGGTATGTTCAGTCATCTAGAAAAGCTCAAGCAAACTGGTATAGAAAAATACTTGAGGCATGGAAGCAAGCAAAACCTCCACCGCAGACAGCTGAGGAAGCTTCTAGGCTTGTCACTGATATCTTAAAAAGGAATCAGAAAGCTGATGTTGAGGGGCTTTTGTCTTTCTATGGACTCCCTTTGTCTCATACTCTAGTTGAAGTCACTGTTGAAGCTCCTGTGTCTTTGCCTGAAGGGATTCTTTTCGAATTTCAAACACTTCCGGTGGATCCAAAAGCTGTGGCAGATGGAGACACCATCACAGTGTATGTCAGTACTTCAGAGCCGGTTGTGTCATCTTCTGTTCCAAGGGAAGTCAATCTTGCAGCTGTTCAAAGAGCAAAAGCACGTGAGAAGAGAAATTATCCAAAAGCTGACGAACTTCACCAAAAGATCATTGATTCTGGTTACAGGGTACTAAATATTGAGAATGAGGAAGTTCTTGCTCGGAAGTTCAGAATTAGACTAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004521 GO:0004536 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006308 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0019439 GO:0034641 GO:0034655 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140097 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SNase

Protein Analysis

225

Amino Acids

24.88

Weight (kDa)

7.75

Isoelectric Point (pI)

37.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006546)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40410 AT2G40410
fragaria_vesca	FvH4_7g25420 FvH4_7g25420 FvH4_7g25420
malus_domestica	MD01G1160800.v1.1 MD07G1228600.v1.1
prunus_persica	Prupe.2G258500_v2.0.a1
pyrus_communis	pycom01g17670 pycom07g20700
rosa_chinensis	RchiOBHm_Chr1g0371391 RchiOBHm_Chr3g0455981
rosa_laevigata	RLG00000026967 RLG00000030163
rosa_multiflora	Rmu_co8299661.1_g000001 Rmu_sc0000809.1_g000026 Rmu_sc0027221.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232720 Rroxscaffold_4G00285730
rosa_rugosa	Rorug01G0363600
rosa_samantha	Rh1AG373700 Rh1BG337100 Rh1DG368100 Rh5BG126800
rosa_wichuraiana	Rw1G032870 Rw3G017510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	84, 87, 248
AclWI	GGATC	2 cut(s)	428, 441
AcsI	RAATTY	1 cut(s)	413
AcuI	CTGAAG	3 cut(s)	174, 417, 468
AcvI	CACGTG	1 cut(s)	554
AcyI	GRCGYC	1 cut(s)	78
AfaI	GTAC	2 cut(s)	481, 621
AgsI	TTSAA	5 cut(s)	127, 365, 377, 419, 539
AjnI	CCWGG	1 cut(s)	144
AluBI	AGCT	9 cut(s)	107, 191, 257, 266, 308, 380, 443, 533, 578
AluI	AGCT	9 cut(s)	107, 191, 257, 266, 308, 380, 443, 533, 578
Alw26I	GTCTC	3 cut(s)	85, 354, 450
AlwI	GGATC	2 cut(s)	428, 441
ApeKI	GCWGC	2 cut(s)	36, 530
ApoI	RAATTY	1 cut(s)	413
Asp700I	GAANNNNTTC	1 cut(s)	402
AspS9I	GGNCC	1 cut(s)	68
AsuHPI	GGTGA	1 cut(s)	581
AsuII	TTCGAA	1 cut(s)	411
AvaII	GGWCC	1 cut(s)	68
BamHI	GGATCC	1 cut(s)	433
BbrPI	CACGTG	1 cut(s)	554
BbvCI	CCTCAGC	1 cut(s)	258
BbvI	GCAGC	2 cut(s)	23, 542
BccI	CCATC	2 cut(s)	446, 470
BceAI	ACGGC	1 cut(s)	91
BciT130I	CCWGG	1 cut(s)	146
BcoDI	GTCTC	3 cut(s)	85, 354, 450
BfaI	CTAG	3 cut(s)	183, 270, 359
BisI	GCNGC	3 cut(s)	37, 87, 531
BlsI	GCNGC	3 cut(s)	38, 88, 532
BmcAI	AGTACT	1 cut(s)	481
Bme1390I	CCNGG	1 cut(s)	146
Bme18I	GGWCC	1 cut(s)	68
BmgT120I	GGNCC	1 cut(s)	68
BmiI	GGNNCC	2 cut(s)	150, 435
BmrFI	CCNGG	1 cut(s)	146
Bpu10I	CCTNAGC	1 cut(s)	258
Bpu14I	TTCGAA	1 cut(s)	411
BpuEI	CTTGAG	2 cut(s)	177, 239
BsaAI	YACGTR	1 cut(s)	554
BsaHI	GRCGYC	1 cut(s)	78
BsaJI	CCNNGG	2 cut(s)	144, 512
BsaWI	WCCGGW	1 cut(s)	427
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bse118I	RCCGGY	1 cut(s)	490
Bse1I	ACTGG	1 cut(s)	206
BseBI	CCWGG	1 cut(s)	146
BseDI	CCNNGG	2 cut(s)	144, 512
BseMII	CTCAG	1 cut(s)	249
BseNI	ACTGG	1 cut(s)	206
BseXI	GCAGC	2 cut(s)	23, 542
BsiSI	CCGG	2 cut(s)	428, 491
BsmAI	GTCTC	3 cut(s)	85, 354, 450
BsmBI	CGTCTC	1 cut(s)	85
Bsp119I	TTCGAA	1 cut(s)	411
Bsp143I	GATC	4 cut(s)	118, 135, 433, 597
BspACI	CCGC	3 cut(s)	84, 87, 248
BspCNI	CTCAG	1 cut(s)	250
BspLI	GGNNCC	2 cut(s)	150, 435
BspPI	GGATC	2 cut(s)	428, 441
BspT104I	TTCGAA	1 cut(s)	411
BsrFI	RCCGGY	1 cut(s)	490
BsrI	ACTGG	1 cut(s)	206
BssAI	RCCGGY	1 cut(s)	490
BssECI	CCNNGG	2 cut(s)	144, 512
BssMI	GATC	4 cut(s)	118, 135, 433, 597
BssNI	GRCGYC	1 cut(s)	78
BssT1I	CCWWGG	1 cut(s)	512
Bst2UI	CCWGG	1 cut(s)	146
Bst4CI	ACNGT	3 cut(s)	94, 373, 469
Bst6I	CTCTTC	2 cut(s)	128, 554
BstACI	GRCGYC	1 cut(s)	78
BstBAI	YACGTR	1 cut(s)	554
BstBI	TTCGAA	1 cut(s)	411
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	2 cut(s)	258, 671
BstKTI	GATC	4 cut(s)	121, 138, 436, 600
BstMAI	GTCTC	3 cut(s)	85, 354, 450
BstMBI	GATC	4 cut(s)	118, 135, 433, 597
BstMWI	GCNNNNNNNGC	1 cut(s)	263
BstNI	CCWGG	1 cut(s)	146
BstSCI	CCNGG	1 cut(s)	144
BstV1I	GCAGC	2 cut(s)	23, 542
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
BtsIMutI	CAGTG	3 cut(s)	279, 369, 474
Cac8I	GCNNGC	1 cut(s)	234
Cfr10I	RCCGGY	1 cut(s)	490
Cfr13I	GGNCC	1 cut(s)	68
CseI	GACGC	1 cut(s)	67
Csp6I	GTAC	2 cut(s)	480, 620
CspCI	CAANNNNNGTGG	2 cut(s)	426, 461
CviAII	CATG	1 cut(s)	225
CviQI	GTAC	2 cut(s)	480, 620
DdeI	CTNAG	2 cut(s)	258, 671
DpnI	GATC	4 cut(s)	120, 137, 435, 599
DpnII	GATC	4 cut(s)	118, 135, 433, 597
Eam1104I	CTCTTC	2 cut(s)	128, 554
EarI	CTCTTC	2 cut(s)	128, 554
EciI	GGCGGA	1 cut(s)	73
Eco130I	CCWWGG	1 cut(s)	512
Eco32I	GATATC	1 cut(s)	286
Eco47I	GGWCC	1 cut(s)	68
Eco57I	CTGAAG	3 cut(s)	174, 417, 468
Eco72I	CACGTG	1 cut(s)	554
EcoRII	CCWGG	1 cut(s)	144
EcoRV	GATATC	1 cut(s)	286
EcoT14I	CCWWGG	1 cut(s)	512
ErhI	CCWWGG	1 cut(s)	512
Esp3I	CGTCTC	1 cut(s)	85
FaeI	CATG	1 cut(s)	228
FaiI	YATR	6 cut(s)	171, 207, 226, 336, 354, 474
FalI	AAGNNNNNCTT	4 cut(s)	390, 422, 510, 542
FatI	CATG	1 cut(s)	224
Fnu4HI	GCNGC	3 cut(s)	37, 87, 531
Fsp4HI	GCNGC	3 cut(s)	37, 87, 531
FspBI	CTAG	3 cut(s)	183, 270, 359
GluI	GCNGC	3 cut(s)	37, 87, 531
HapII	CCGG	2 cut(s)	428, 491
HgaI	GACGC	1 cut(s)	67
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	1 cut(s)	228
HindIII	AAGCTT	1 cut(s)	264
HinfI	GANTC	5 cut(s)	59, 298, 339, 403, 605
HpaII	CCGG	2 cut(s)	428, 491
HphI	GGTGA	1 cut(s)	581
Hpy188I	TCNGA	4 cut(s)	303, 487, 654, 662
Hpy188III	TCNNGA	4 cut(s)	116, 133, 152, 183
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	2 cut(s)	149, 392
HpyCH4III	ACNGT	3 cut(s)	94, 373, 469
HpyCH4IV	ACGT	2 cut(s)	17, 553
HpyCH4V	TGCA	2 cut(s)	39, 530
HpyF10VI	GCNNNNNNNGC	1 cut(s)	263
HpyF3I	CTNAG	2 cut(s)	258, 671
HpySE526I	ACGT	2 cut(s)	17, 553
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	1 cut(s)	228
Kzo9I	GATC	4 cut(s)	118, 135, 433, 597
LmnI	GCTCC	1 cut(s)	385
Lsp1109I	GCAGC	2 cut(s)	23, 542
MaeI	CTAG	3 cut(s)	183, 270, 359
MaeII	ACGT	2 cut(s)	17, 553
MaeIII	GTNAC	4 cut(s)	5, 277, 367, 611
MalI	GATC	4 cut(s)	120, 137, 435, 599
MboI	GATC	4 cut(s)	118, 135, 433, 597
MboII	GAAGA	3 cut(s)	115, 495, 571
MflI	RGATCY	1 cut(s)	433
MluCI	AATT	3 cut(s)	413, 565, 663
MlyI	GAGTC	2 cut(s)	53, 333
MnlI	CCTC	7 cut(s)	81, 159, 214, 252, 253, 310, 631
MroXI	GAANNNNTTC	1 cut(s)	402
MseI	TTAA	1 cut(s)	290
MslI	CAYNNNNRTG	1 cut(s)	467
MspA1I	CMGCKG	2 cut(s)	257, 533
MspI	CCGG	2 cut(s)	428, 491
MspR9I	CCNGG	1 cut(s)	146
MvaI	CCWGG	1 cut(s)	146
MwoI	GCNNNNNNNGC	1 cut(s)	263
NdeII	GATC	4 cut(s)	118, 135, 433, 597
NlaIII	CATG	1 cut(s)	228
NlaIV	GGNNCC	2 cut(s)	150, 435
NmuCI	GTSAC	2 cut(s)	277, 367
NspV	TTCGAA	1 cut(s)	411
PdmI	GAANNNNTTC	1 cut(s)	402
PfeI	GAWTC	3 cut(s)	298, 403, 605
PkrI	GCNGC	3 cut(s)	38, 88, 532
PleI	GAGTC	2 cut(s)	53, 333
PmaCI	CACGTG	1 cut(s)	554
PmlI	CACGTG	1 cut(s)	554
PpsI	GAGTC	2 cut(s)	53, 333
Ppu21I	YACGTR	1 cut(s)	554
Psp6I	CCWGG	1 cut(s)	144
PspCI	CACGTG	1 cut(s)	554
PspGI	CCWGG	1 cut(s)	144
PspN4I	GGNNCC	2 cut(s)	150, 435
PspPI	GGNCC	1 cut(s)	68
PsuI	RGATCY	1 cut(s)	433
PvuII	CAGCTG	2 cut(s)	257, 533
RsaI	GTAC	2 cut(s)	481, 621
RsaNI	GTAC	2 cut(s)	480, 620
RseI	CAYNNNNRTG	1 cut(s)	467
SaqAI	TTAA	1 cut(s)	290
SatI	GCNGC	3 cut(s)	37, 87, 531
Sau3AI	GATC	4 cut(s)	118, 135, 433, 597
Sau96I	GGNCC	1 cut(s)	68
ScaI	AGTACT	1 cut(s)	481
SchI	GAGTC	2 cut(s)	53, 333
ScrFI	CCNGG	1 cut(s)	146
SfuI	TTCGAA	1 cut(s)	411
SinI	GGWCC	1 cut(s)	68
SmiMI	CAYNNNNRTG	1 cut(s)	467
SmlI	CTYRAG	2 cut(s)	192, 218
SmoI	CTYRAG	2 cut(s)	192, 218
Sse9I	AATT	3 cut(s)	413, 565, 663
SsiI	CCGC	3 cut(s)	84, 87, 248
SspI	AATATT	1 cut(s)	628
SspMI	CTAG	3 cut(s)	183, 270, 359
StyD4I	CCNGG	1 cut(s)	144
StyI	CCWWGG	1 cut(s)	512
TaaI	ACNGT	3 cut(s)	94, 373, 469
TaiI	ACGT	2 cut(s)	20, 556
TaqI	TCGA	2 cut(s)	132, 411
TasI	AATT	3 cut(s)	413, 565, 663
TatI	WGTACW	1 cut(s)	479
TauI	GCSGC	1 cut(s)	89
TfiI	GAWTC	3 cut(s)	298, 403, 605
Tru1I	TTAA	1 cut(s)	290
Tru9I	TTAA	1 cut(s)	290
TscAI	CASTG	3 cut(s)	286, 376, 474
TseFI	GTSAC	2 cut(s)	277, 367
TseI	GCWGC	2 cut(s)	36, 530
Tsp45I	GTSAC	2 cut(s)	277, 367
TspGWI	ACGGA	1 cut(s)	42
TspRI	CASTG	3 cut(s)	286, 376, 474
VpaK11BI	GGWCC	1 cut(s)	68
XapI	RAATTY	1 cut(s)	413
XbaI	TCTAGA	1 cut(s)	182
XmnI	GAANNNNTTC	1 cut(s)	402
XspI	CTAG	3 cut(s)	183, 270, 359
ZrmI	AGTACT	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.