Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006546

Physical Location & Seq

Genomic Coordinates Forward (+)

5614143 .. 5614538

Gene Structure 396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42287

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGTCTCCCTCTTCCTCATGCTCTGGTCCAACTTTCCGCTAGGGTCTCAACTTCCGGCTGGGGTCCCAACTTCATTGCCTCAAGGAGTAAAGTTTGAATTCCAGACACTACGGGTTGATGCAAAAGTTCAAGATGGCGATTCAGTGACAGTCTATGTAAGTACAGCAGATCCCAGGGAGTCATCCTGTGTTCTGAGCGAGGTACGTACAGATGGCGATCATCCAAAGATCAAAAGCTCGCGAGAAGAAGAATTATACCAAGGCAGATGCACTTTACAAAAAGATCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004521 GO:0004536 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006308 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0019439 GO:0034641 GO:0034655 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140097 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SNase

Protein Analysis

96

Amino Acids

10.69

Weight (kDa)

5.23

Isoelectric Point (pI)

48.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006546)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40410 AT2G40410
fragaria_vesca	FvH4_7g25420 FvH4_7g25420 FvH4_7g25420
malus_domestica	MD01G1160800.v1.1 MD07G1228600.v1.1
prunus_persica	Prupe.2G258500_v2.0.a1
pyrus_communis	pycom01g17670 pycom07g20700
rosa_chinensis	RchiOBHm_Chr1g0371391 RchiOBHm_Chr3g0455981
rosa_laevigata	RLG00000026967 RLG00000030163
rosa_multiflora	Rmu_co8299661.1_g000001 Rmu_sc0000809.1_g000026 Rmu_sc0027221.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232720 Rroxscaffold_4G00285730
rosa_rugosa	Rorug01G0363600
rosa_samantha	Rh1AG373700 Rh1BG337100 Rh1DG368100 Rh5BG126800
rosa_wichuraiana	Rw1G032870 Rw3G017510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	241
AciI	CCGC	1 cut(s)	38
AclWI	GGATC	1 cut(s)	164
AcsI	RAATTY	1 cut(s)	98
AfaI	GTAC	3 cut(s)	163, 204, 208
AgsI	TTSAA	2 cut(s)	98, 131
AjnI	CCWGG	1 cut(s)	173
AluBI	AGCT	1 cut(s)	237
AluI	AGCT	1 cut(s)	237
Alw26I	GTCTC	2 cut(s)	10, 51
AlwI	GGATC	1 cut(s)	164
ApoI	RAATTY	1 cut(s)	98
AspS9I	GGNCC	2 cut(s)	27, 64
AvaII	GGWCC	2 cut(s)	27, 64
BccI	CCATC	2 cut(s)	128, 206
BciT130I	CCWGG	1 cut(s)	175
BcoDI	GTCTC	2 cut(s)	10, 51
BfaI	CTAG	1 cut(s)	41
Bme1390I	CCNGG	1 cut(s)	175
Bme18I	GGWCC	2 cut(s)	27, 64
BmgT120I	GGNCC	2 cut(s)	27, 64
BmiI	GGNNCC	2 cut(s)	65, 66
BmrFI	CCNGG	1 cut(s)	175
BmsI	GCATC	2 cut(s)	109, 257
BpuEI	CTTGAG	1 cut(s)	66
BsaAI	YACGTR	1 cut(s)	206
BsaBI	GATNNNNATC	1 cut(s)	216
BsaI	GGTCTC	2 cut(s)	10, 51
BsaJI	CCNNGG	3 cut(s)	173, 174, 259
Bse3DI	GCAATG	1 cut(s)	74
Bse8I	GATNNNNATC	1 cut(s)	216
BseBI	CCWGG	1 cut(s)	175
BseDI	CCNNGG	3 cut(s)	173, 174, 259
BseGI	GGATG	2 cut(s)	182, 220
BseJI	GATNNNNATC	1 cut(s)	216
BseMI	GCAATG	1 cut(s)	74
BseMII	CTCAG	1 cut(s)	185
BseYI	CCCAGC	1 cut(s)	59
Bsh1236I	CGCG	1 cut(s)	241
BsiSI	CCGG	1 cut(s)	56
BslFI	GGGAC	1 cut(s)	50
BsmAI	GTCTC	2 cut(s)	10, 51
BsmFI	GGGAC	1 cut(s)	50
Bso31I	GGTCTC	2 cut(s)	10, 51
Bsp143I	GATC	4 cut(s)	169, 217, 228, 283
Bsp68I	TCGCGA	1 cut(s)	241
BspACI	CCGC	1 cut(s)	38
BspCNI	CTCAG	1 cut(s)	186
BspFNI	CGCG	1 cut(s)	241
BspLI	GGNNCC	2 cut(s)	65, 66
BspPI	GGATC	1 cut(s)	164
BspTNI	GGTCTC	2 cut(s)	10, 51
BsrDI	GCAATG	1 cut(s)	74
BssECI	CCNNGG	3 cut(s)	173, 174, 259
BssMI	GATC	4 cut(s)	169, 217, 228, 283
BssT1I	CCWWGG	1 cut(s)	259
Bst2UI	CCWGG	1 cut(s)	175
Bst4CI	ACNGT	1 cut(s)	151
Bst6I	CTCTTC	1 cut(s)	17
BstBAI	YACGTR	1 cut(s)	206
BstC8I	GCNNGC	1 cut(s)	239
BstDEI	CTNAG	1 cut(s)	194
BstF5I	GGATG	2 cut(s)	182, 220
BstFNI	CGCG	1 cut(s)	241
BstKTI	GATC	4 cut(s)	172, 220, 231, 286
BstMAI	GTCTC	2 cut(s)	10, 51
BstMBI	GATC	4 cut(s)	169, 217, 228, 283
BstNI	CCWGG	1 cut(s)	175
BstSCI	CCNGG	1 cut(s)	173
BstSNI	TACGTA	1 cut(s)	206
BstUI	CGCG	1 cut(s)	241
BstX2I	RGATCY	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	169
BtsCI	GGATG	2 cut(s)	182, 220
BtsIMutI	CAGTG	1 cut(s)	150
BtuMI	TCGCGA	1 cut(s)	241
Cac8I	GCNNGC	1 cut(s)	239
Cfr13I	GGNCC	2 cut(s)	27, 64
Csp6I	GTAC	3 cut(s)	162, 203, 207
CviAII	CATG	1 cut(s)	19
CviJI	RGCY	2 cut(s)	59, 237
CviKI_1	RGCY	2 cut(s)	59, 237
CviQI	GTAC	3 cut(s)	162, 203, 207
DdeI	CTNAG	1 cut(s)	194
DpnI	GATC	4 cut(s)	171, 219, 230, 285
DpnII	GATC	4 cut(s)	169, 217, 228, 283
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
Eco105I	TACGTA	1 cut(s)	206
Eco130I	CCWWGG	1 cut(s)	259
Eco31I	GGTCTC	2 cut(s)	10, 51
Eco47I	GGWCC	2 cut(s)	27, 64
EcoO109I	RGGNCCY	1 cut(s)	64
EcoRI	GAATTC	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	173
EcoT14I	CCWWGG	1 cut(s)	259
ErhI	CCWWGG	1 cut(s)	259
FaeI	CATG	1 cut(s)	22
FaiI	YATR	3 cut(s)	20, 156, 256
FaqI	GGGAC	1 cut(s)	50
FatI	CATG	1 cut(s)	18
FokI	GGATG	2 cut(s)	169, 207
FspBI	CTAG	1 cut(s)	41
GsaI	CCCAGC	1 cut(s)	63
HapII	CCGG	1 cut(s)	56
Hin1II	CATG	1 cut(s)	22
HinfI	GANTC	2 cut(s)	140, 179
HpaII	CCGG	1 cut(s)	56
Hpy188I	TCNGA	1 cut(s)	195
Hpy188III	TCNNGA	3 cut(s)	103, 131, 240
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4IV	ACGT	1 cut(s)	205
HpyCH4V	TGCA	2 cut(s)	122, 270
HpyF3I	CTNAG	1 cut(s)	194
HpySE526I	ACGT	1 cut(s)	205
Hsp92II	CATG	1 cut(s)	22
KflI	GGGWCCC	1 cut(s)	64
Kzo9I	GATC	4 cut(s)	169, 217, 228, 283
LpnPI	CCDG	7 cut(s)	10, 45, 69, 116, 160, 187, 199
LweI	GCATC	2 cut(s)	109, 257
MaeI	CTAG	1 cut(s)	41
MaeII	ACGT	1 cut(s)	205
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	4 cut(s)	171, 219, 230, 285
MboI	GATC	4 cut(s)	169, 217, 228, 283
MboII	GAAGA	3 cut(s)	4, 257, 260
MflI	RGATCY	1 cut(s)	169
MluCI	AATT	2 cut(s)	98, 251
MlyI	GAGTC	1 cut(s)	188
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	4 cut(s)	20, 26, 90, 193
MspI	CCGG	1 cut(s)	56
MspR9I	CCNGG	1 cut(s)	175
MvaI	CCWGG	1 cut(s)	175
MvnI	CGCG	1 cut(s)	241
NdeII	GATC	4 cut(s)	169, 217, 228, 283
NlaIII	CATG	1 cut(s)	22
NlaIV	GGNNCC	2 cut(s)	65, 66
NmuCI	GTSAC	1 cut(s)	145
NruI	TCGCGA	1 cut(s)	241
PasI	CCCWGGG	1 cut(s)	174
PfeI	GAWTC	1 cut(s)	140
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
Ppu21I	YACGTR	1 cut(s)	206
PpuMI	RGGWCCY	1 cut(s)	64
Psp5II	RGGWCCY	1 cut(s)	64
Psp6I	CCWGG	1 cut(s)	173
PspFI	CCCAGC	1 cut(s)	59
PspGI	CCWGG	1 cut(s)	173
PspN4I	GGNNCC	2 cut(s)	65, 66
PspPI	GGNCC	2 cut(s)	27, 64
PspPPI	RGGWCCY	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	169
RruI	TCGCGA	1 cut(s)	241
RsaI	GTAC	3 cut(s)	163, 204, 208
RsaNI	GTAC	3 cut(s)	162, 203, 207
Sau3AI	GATC	4 cut(s)	169, 217, 228, 283
Sau96I	GGNCC	2 cut(s)	27, 64
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	1 cut(s)	175
SetI	ASST	3 cut(s)	204, 208, 239
SfaNI	GCATC	2 cut(s)	109, 257
SinI	GGWCC	2 cut(s)	27, 64
SmlI	CTYRAG	1 cut(s)	81
SmoI	CTYRAG	1 cut(s)	81
SnaBI	TACGTA	1 cut(s)	206
Sse9I	AATT	2 cut(s)	98, 251
SsiI	CCGC	1 cut(s)	38
SspMI	CTAG	1 cut(s)	41
StyD4I	CCNGG	1 cut(s)	173
StyI	CCWWGG	1 cut(s)	259
TaaI	ACNGT	1 cut(s)	151
TaiI	ACGT	1 cut(s)	208
TasI	AATT	2 cut(s)	98, 251
TatI	WGTACW	1 cut(s)	161
TfiI	GAWTC	1 cut(s)	140
TscAI	CASTG	1 cut(s)	150
TseFI	GTSAC	1 cut(s)	145
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	1 cut(s)	63
TspRI	CASTG	1 cut(s)	150
VpaK11BI	GGWCC	2 cut(s)	27, 64
XapI	RAATTY	1 cut(s)	98
XspI	CTAG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.