Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0006546

Physical Location & Seq

Genomic Coordinates Forward (+)

59357576 .. 59360005

Gene Structure 2430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG368100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGGAAACGCCTTTAGGCTTCTTTACGGTCATTGCTGCAAGCCAACCACCACAGACTCCGATTCTCTTGGGCCCCACGGCGTTTCCGCCGCCACTGTCGGCGTTTCGGCTCTCGCCCACGATCTCTTCCACTTTGAGAACACCGCCCAGGTCCCAGAAGGACTGAATCAGCATGTAGTTTCATCCAAGAAAGCTCAAGCTAACTGGTATAGAAAACTAGTTGAGAGCTGGCGAGAAGCGAGACCGCCACCAATAACAGCTGAAGAAGCAGCTAGGCTTGTTATTCAAACCCTCAAGCATCACCAAAAGGCTGATGTTGAGGGATTATTGGCTTTCTATGGTCTCCCTCTTCCTCATACTCTGGTCCAACTTTCGGCTGGGGTCCCAACTTCATTGCCTCAAGGAGTAAAGTATGAATTCCAGACACTACCGGTTGATGCAAAAGCAGTTCAAGATGGCGATTCAGTGACAGTCTATGTAAGTACAGCAGATCCCAGGGAGTCATCATGTGTTCCGAGCGAGGTACAGATGGCGACCATCCAAAGATCAAAAGCTCGTGAGAAGAAGAATTATACCAAGGCAGATGCACTTCACAAAAAGATCACTGACGCTGGATACCGGTTGGATATTCATATGCCTCTTAATAAAACTCTTTTAATTGGTCATTTGGATTTACTACCATGTAGATTTCAGAAGAAAGGTTGTCAAAATTGCTTTTCACTCTCCATTCAGGGTATTGCAATTTCAAAACGAGGATGTCCTTGCACGAAAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004521 GO:0004536 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006308 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0019439 GO:0034641 GO:0034655 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140097 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SNase

Protein Analysis

258

Amino Acids

28.24

Weight (kDa)

8.96

Isoelectric Point (pI)

28.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006546)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40410 AT2G40410
fragaria_vesca	FvH4_7g25420 FvH4_7g25420 FvH4_7g25420
malus_domestica	MD01G1160800.v1.1 MD07G1228600.v1.1
prunus_persica	Prupe.2G258500_v2.0.a1
pyrus_communis	pycom01g17670 pycom07g20700
rosa_chinensis	RchiOBHm_Chr1g0371391 RchiOBHm_Chr3g0455981
rosa_laevigata	RLG00000026967 RLG00000030163
rosa_multiflora	Rmu_co8299661.1_g000001 Rmu_sc0000809.1_g000026 Rmu_sc0027221.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232720 Rroxscaffold_4G00285730
rosa_rugosa	Rorug01G0363600
rosa_samantha	Rh1AG373700 Rh1BG337100 Rh1DG368100 Rh5BG126800
rosa_wichuraiana	Rw1G032870 Rw3G017510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	87, 90, 144, 245
AclWI	GGATC	1 cut(s)	485
AcsI	RAATTY	1 cut(s)	416
AcuI	CTGAAG	1 cut(s)	282
AfaI	GTAC	2 cut(s)	484, 525
AfiI	CCNNNNNNNGG	1 cut(s)	373
AgeI	ACCGGT	2 cut(s)	430, 618
AgsI	TTSAA	3 cut(s)	287, 452, 747
AhlI	ACTAGT	1 cut(s)	217
AjnI	CCWGG	2 cut(s)	147, 494
AluBI	AGCT	6 cut(s)	194, 200, 228, 260, 272, 554
AluI	AGCT	6 cut(s)	194, 200, 228, 260, 272, 554
Alw26I	GTCTC	2 cut(s)	235, 347
AlwI	GGATC	1 cut(s)	485
AoxI	GGCC	1 cut(s)	71
ApaI	GGGCCC	1 cut(s)	75
ApeKI	GCWGC	2 cut(s)	36, 269
ApoI	RAATTY	1 cut(s)	416
AsiGI	ACCGGT	2 cut(s)	430, 618
AspS9I	GGNCC	5 cut(s)	71, 72, 151, 364, 382
AsuHPI	GGTGA	1 cut(s)	293
AvaII	GGWCC	3 cut(s)	151, 364, 382
BaeGI	GKGCMC	1 cut(s)	75
BanII	GRGCYC	1 cut(s)	75
BauI	CACGAG	1 cut(s)	555
BbvI	GCAGC	2 cut(s)	23, 281
BccI	CCATC	3 cut(s)	449, 523, 545
BceAI	ACGGC	1 cut(s)	94
BciT130I	CCWGG	2 cut(s)	149, 496
BciVI	GTATCC	1 cut(s)	608
BcoDI	GTCTC	2 cut(s)	235, 347
BcuI	ACTAGT	1 cut(s)	217
BfaI	CTAG	2 cut(s)	218, 273
BfuI	GTATCC	1 cut(s)	608
BisI	GCNGC	3 cut(s)	37, 90, 270
BlsI	GCNGC	3 cut(s)	38, 91, 271
Bme1390I	CCNGG	2 cut(s)	149, 496
Bme18I	GGWCC	3 cut(s)	151, 364, 382
BmgT120I	GGNCC	5 cut(s)	71, 72, 151, 364, 382
BmiI	GGNNCC	5 cut(s)	73, 74, 153, 383, 384
BmrFI	CCNGG	2 cut(s)	149, 496
BmsI	GCATC	3 cut(s)	307, 427, 574
BpuEI	CTTGAG	3 cut(s)	180, 278, 384
BsaI	GGTCTC	2 cut(s)	235, 347
BsaJI	CCNNGG	5 cut(s)	76, 147, 494, 495, 576
BsaWI	WCCGGW	2 cut(s)	430, 618
Bsc4I	CCNNNNNNNGG	1 cut(s)	373
Bse118I	RCCGGY	2 cut(s)	430, 618
Bse1I	ACTGG	1 cut(s)	209
Bse3DI	GCAATG	2 cut(s)	31, 392
BseBI	CCWGG	2 cut(s)	149, 496
BseDI	CCNNGG	5 cut(s)	76, 147, 494, 495, 576
BseGI	GGATG	3 cut(s)	182, 537, 761
BseLI	CCNNNNNNNGG	1 cut(s)	373
BseMI	GCAATG	2 cut(s)	31, 392
BseNI	ACTGG	1 cut(s)	209
BseSI	GKGCMC	1 cut(s)	75
BseXI	GCAGC	2 cut(s)	23, 281
BseYI	CCCAGC	1 cut(s)	377
BshFI	GGCC	1 cut(s)	73
BshTI	ACCGGT	2 cut(s)	430, 618
BsiSI	CCGG	2 cut(s)	431, 619
BslFI	GGGAC	2 cut(s)	137, 368
BslI	CCNNNNNNNGG	1 cut(s)	373
BsmAI	GTCTC	2 cut(s)	235, 347
BsmFI	GGGAC	2 cut(s)	137, 368
BsnI	GGCC	1 cut(s)	73
Bso31I	GGTCTC	2 cut(s)	235, 347
Bsp120I	GGGCCC	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp143I	GATC	4 cut(s)	121, 490, 545, 600
BspACI	CCGC	4 cut(s)	87, 90, 144, 245
BspANI	GGCC	1 cut(s)	73
BspLI	GGNNCC	5 cut(s)	73, 74, 153, 383, 384
BspPI	GGATC	1 cut(s)	485
BspTNI	GGTCTC	2 cut(s)	235, 347
BsrDI	GCAATG	2 cut(s)	31, 392
BsrFI	RCCGGY	2 cut(s)	430, 618
BsrI	ACTGG	1 cut(s)	209
BssAI	RCCGGY	2 cut(s)	430, 618
BssECI	CCNNGG	5 cut(s)	76, 147, 494, 495, 576
BssMI	GATC	4 cut(s)	121, 490, 545, 600
BssSI	CACGAG	1 cut(s)	555
BssT1I	CCWWGG	1 cut(s)	576
Bst2BI	CACGAG	1 cut(s)	555
Bst2UI	CCWGG	2 cut(s)	149, 496
Bst4CI	ACNGT	3 cut(s)	29, 97, 472
Bst6I	CTCTTC	2 cut(s)	131, 354
BstC8I	GCNNGC	2 cut(s)	41, 230
BstDSI	CCRYGG	1 cut(s)	76
BstF5I	GGATG	3 cut(s)	182, 537, 761
BstKTI	GATC	4 cut(s)	124, 493, 548, 603
BstMAI	GTCTC	2 cut(s)	235, 347
BstMBI	GATC	4 cut(s)	121, 490, 545, 600
BstMWI	GCNNNNNNNGC	1 cut(s)	266
BstNI	CCWGG	2 cut(s)	149, 496
BstNSI	RCATGY	1 cut(s)	176
BstSCI	CCNGG	2 cut(s)	147, 494
BstSLI	GKGCMC	1 cut(s)	75
BstV1I	GCAGC	2 cut(s)	23, 281
BstX2I	RGATCY	1 cut(s)	490
BstYI	RGATCY	1 cut(s)	490
BsuI	GTATCC	1 cut(s)	608
BsuRI	GGCC	1 cut(s)	73
BtgI	CCRYGG	1 cut(s)	76
BtsCI	GGATG	3 cut(s)	182, 537, 761
BtsIMutI	CAGTG	3 cut(s)	93, 471, 603
Cac8I	GCNNGC	2 cut(s)	41, 230
Cfr10I	RCCGGY	2 cut(s)	430, 618
Cfr13I	GGNCC	5 cut(s)	71, 72, 151, 364, 382
CseI	GACGC	1 cut(s)	617
Csp6I	GTAC	2 cut(s)	483, 524
CspAI	ACCGGT	2 cut(s)	430, 618
CviAII	CATG	3 cut(s)	173, 507, 681
CviQI	GTAC	2 cut(s)	483, 524
DpnI	GATC	4 cut(s)	123, 492, 547, 602
DpnII	GATC	4 cut(s)	121, 490, 545, 600
Eam1104I	CTCTTC	2 cut(s)	131, 354
EarI	CTCTTC	2 cut(s)	131, 354
EciI	GGCGGA	1 cut(s)	76
Eco130I	CCWWGG	1 cut(s)	576
Eco24I	GRGCYC	1 cut(s)	75
Eco31I	GGTCTC	2 cut(s)	235, 347
Eco47I	GGWCC	3 cut(s)	151, 364, 382
Eco57I	CTGAAG	1 cut(s)	282
EcoO109I	RGGNCCY	3 cut(s)	72, 151, 382
EcoRI	GAATTC	1 cut(s)	416
EcoRII	CCWGG	2 cut(s)	147, 494
EcoT14I	CCWWGG	1 cut(s)	576
EcoT38I	GRGCYC	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	576
FaeI	CATG	3 cut(s)	176, 510, 684
FaqI	GGGAC	2 cut(s)	137, 368
FatI	CATG	3 cut(s)	172, 506, 680
FauNDI	CATATG	1 cut(s)	633
Fnu4HI	GCNGC	3 cut(s)	37, 90, 270
FokI	GGATG	3 cut(s)	169, 524, 768
FriOI	GRGCYC	1 cut(s)	75
Fsp4HI	GCNGC	3 cut(s)	37, 90, 270
FspBI	CTAG	2 cut(s)	218, 273
GluI	GCNGC	3 cut(s)	37, 90, 270
GsaI	CCCAGC	1 cut(s)	381
HaeIII	GGCC	1 cut(s)	73
HapII	CCGG	2 cut(s)	431, 619
HgaI	GACGC	1 cut(s)	617
Hin1II	CATG	3 cut(s)	176, 510, 684
HinfI	GANTC	5 cut(s)	56, 62, 166, 461, 500
HpaII	CCGG	2 cut(s)	431, 619
HphI	GGTGA	1 cut(s)	293
Hpy188I	TCNGA	3 cut(s)	61, 516, 693
Hpy188III	TCNNGA	3 cut(s)	421, 452, 557
HpyAV	CCTTC	1 cut(s)	152
HpyCH4III	ACNGT	3 cut(s)	29, 97, 472
HpyCH4V	TGCA	5 cut(s)	39, 440, 587, 740, 765
HpyF10VI	GCNNNNNNNGC	1 cut(s)	266
Hsp92II	CATG	3 cut(s)	176, 510, 684
KflI	GGGWCCC	1 cut(s)	382
Kzo9I	GATC	4 cut(s)	121, 490, 545, 600
Lsp1109I	GCAGC	2 cut(s)	23, 281
LweI	GCATC	3 cut(s)	307, 427, 574
MaeI	CTAG	2 cut(s)	218, 273
MaeIII	GTNAC	1 cut(s)	466
MalI	GATC	4 cut(s)	123, 492, 547, 602
MboI	GATC	4 cut(s)	121, 490, 545, 600
MboII	GAAGA	6 cut(s)	118, 275, 341, 574, 577, 706
MflI	RGATCY	1 cut(s)	490
MhlI	GDGCHC	1 cut(s)	75
MluCI	AATT	5 cut(s)	416, 568, 657, 709, 741
MlyI	GAGTC	2 cut(s)	50, 509
MmeI	TCCRAC	2 cut(s)	391, 603
MnlI	CCTC	8 cut(s)	302, 313, 357, 363, 408, 514, 648, 746
MseI	TTAA	2 cut(s)	642, 656
MspA1I	CMGCKG	1 cut(s)	260
MspI	CCGG	2 cut(s)	431, 619
MspR9I	CCNGG	2 cut(s)	149, 496
MvaI	CCWGG	2 cut(s)	149, 496
MwoI	GCNNNNNNNGC	1 cut(s)	266
NdeI	CATATG	1 cut(s)	633
NdeII	GATC	4 cut(s)	121, 490, 545, 600
NlaIII	CATG	3 cut(s)	176, 510, 684
NlaIV	GGNNCC	5 cut(s)	73, 74, 153, 383, 384
NmuCI	GTSAC	1 cut(s)	466
NspI	RCATGY	1 cut(s)	176
PasI	CCCWGGG	1 cut(s)	495
PfeI	GAWTC	3 cut(s)	62, 166, 461
PinAI	ACCGGT	2 cut(s)	430, 618
PkrI	GCNGC	3 cut(s)	38, 91, 271
PleI	GAGTC	2 cut(s)	50, 508
PpsI	GAGTC	2 cut(s)	50, 508
PpuMI	RGGWCCY	2 cut(s)	151, 382
Psp5II	RGGWCCY	2 cut(s)	151, 382
Psp6I	CCWGG	2 cut(s)	147, 494
PspFI	CCCAGC	1 cut(s)	377
PspGI	CCWGG	2 cut(s)	147, 494
PspN4I	GGNNCC	5 cut(s)	73, 74, 153, 383, 384
PspOMI	GGGCCC	1 cut(s)	71
PspPI	GGNCC	5 cut(s)	71, 72, 151, 364, 382
PspPPI	RGGWCCY	2 cut(s)	151, 382
PsuI	RGATCY	1 cut(s)	490
PvuII	CAGCTG	1 cut(s)	260
RsaI	GTAC	2 cut(s)	484, 525
RsaNI	GTAC	2 cut(s)	483, 524
SaqAI	TTAA	2 cut(s)	642, 656
SatI	GCNGC	3 cut(s)	37, 90, 270
Sau3AI	GATC	4 cut(s)	121, 490, 545, 600
Sau96I	GGNCC	5 cut(s)	71, 72, 151, 364, 382
SchI	GAGTC	2 cut(s)	50, 509
ScrFI	CCNGG	2 cut(s)	149, 496
SduI	GDGCHC	1 cut(s)	75
SetI	ASST	9 cut(s)	153, 196, 202, 230, 262, 274, 525, 556, 703
SfaNI	GCATC	3 cut(s)	307, 427, 574
SinI	GGWCC	3 cut(s)	151, 364, 382
SmlI	CTYRAG	3 cut(s)	195, 293, 399
SmoI	CTYRAG	3 cut(s)	195, 293, 399
SpeI	ACTAGT	1 cut(s)	217
Sse9I	AATT	5 cut(s)	416, 568, 657, 709, 741
SsiI	CCGC	4 cut(s)	87, 90, 144, 245
SspMI	CTAG	2 cut(s)	218, 273
StyD4I	CCNGG	2 cut(s)	147, 494
StyI	CCWWGG	1 cut(s)	576
TaaI	ACNGT	3 cut(s)	29, 97, 472
TasI	AATT	5 cut(s)	416, 568, 657, 709, 741
TatI	WGTACW	1 cut(s)	482
TauI	GCSGC	1 cut(s)	92
TfiI	GAWTC	3 cut(s)	62, 166, 461
Tru1I	TTAA	2 cut(s)	642, 656
Tru9I	TTAA	2 cut(s)	642, 656
TscAI	CASTG	3 cut(s)	100, 471, 610
TseFI	GTSAC	1 cut(s)	466
TseI	GCWGC	2 cut(s)	36, 269
Tsp45I	GTSAC	1 cut(s)	466
TspDTI	ATGAA	4 cut(s)	171, 381, 429, 620
TspRI	CASTG	3 cut(s)	100, 471, 610
VpaK11BI	GGWCC	3 cut(s)	151, 364, 382
XapI	RAATTY	1 cut(s)	416
XceI	RCATGY	1 cut(s)	176
XcmI	CCANNNNNNNNNTGG	1 cut(s)	374
XspI	CTAG	2 cut(s)	218, 273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.