Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027221.1

Orthogroup ID

OG0006546

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 988

Gene Structure 987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027221.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 500 bp

atgggaaacgcctttaggcttctttacggtcattgctgcaagcccaccaccacagactccgattctcttggcccccacggcgtttccgccgccactgtcggcgtttcggctctcgcccacgatctcttccactttgaaaacaccgcccaggtcccagaaggactgaatcagcatgtagtttcatccaagaaagctcaagctaactggtatagaaaactagttgagagctggcgagaagcgaggccgccaccaataacagctgaagaagcagctaggcttgttattcaaaccctcaagaatcaccaaaaggctgatgttgagggattattggctttctatggtctccctcttcctcatacactggtccaactttcggctggggtcccaacttcattgcctcaaggagtaaagtttgaattccagacactaccggttgatgcaaaagcagttcaagatggcgattcagtgacagtctatgtaagtacagcagatcccaggga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004521 GO:0004536 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006308 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0019439 GO:0034641 GO:0034655 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140097 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SNase

Protein Analysis

166

Amino Acids

17.94

Weight (kDa)

6.36

Isoelectric Point (pI)

22.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006546)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40410 AT2G40410
fragaria_vesca	FvH4_7g25420 FvH4_7g25420 FvH4_7g25420
malus_domestica	MD01G1160800.v1.1 MD07G1228600.v1.1
prunus_persica	Prupe.2G258500_v2.0.a1
pyrus_communis	pycom01g17670 pycom07g20700
rosa_chinensis	RchiOBHm_Chr1g0371391 RchiOBHm_Chr3g0455981
rosa_laevigata	RLG00000026967 RLG00000030163
rosa_multiflora	Rmu_co8299661.1_g000001 Rmu_sc0000809.1_g000026 Rmu_sc0027221.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232720 Rroxscaffold_4G00285730
rosa_rugosa	Rorug01G0363600
rosa_samantha	Rh1AG373700 Rh1BG337100 Rh1DG368100 Rh5BG126800
rosa_wichuraiana	Rw1G032870 Rw3G017510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	87, 90, 144, 245
AclWI	GGATC	1 cut(s)	485
AcsI	RAATTY	1 cut(s)	416
AcuI	CTGAAG	1 cut(s)	282
AfaI	GTAC	1 cut(s)	484
AfiI	CCNNNNNNNGG	1 cut(s)	373
AgeI	ACCGGT	1 cut(s)	430
AgsI	TTSAA	4 cut(s)	137, 287, 416, 452
AhlI	ACTAGT	1 cut(s)	217
AjnI	CCWGG	2 cut(s)	147, 494
AluBI	AGCT	5 cut(s)	194, 200, 228, 260, 272
AluI	AGCT	5 cut(s)	194, 200, 228, 260, 272
Alw26I	GTCTC	1 cut(s)	347
AlwI	GGATC	1 cut(s)	485
AoxI	GGCC	2 cut(s)	70, 242
ApeKI	GCWGC	2 cut(s)	36, 269
ApoI	RAATTY	1 cut(s)	416
AsiGI	ACCGGT	1 cut(s)	430
AspS9I	GGNCC	4 cut(s)	71, 151, 364, 382
AsuHPI	GGTGA	1 cut(s)	293
AvaII	GGWCC	3 cut(s)	151, 364, 382
BbvI	GCAGC	2 cut(s)	23, 281
BccI	CCATC	1 cut(s)	449
BceAI	ACGGC	1 cut(s)	94
BciT130I	CCWGG	2 cut(s)	149, 496
BcoDI	GTCTC	1 cut(s)	347
BcuI	ACTAGT	1 cut(s)	217
BfaI	CTAG	2 cut(s)	218, 273
BglI	GCCNNNNNGGC	1 cut(s)	78
BisI	GCNGC	4 cut(s)	37, 90, 245, 270
BlsI	GCNGC	4 cut(s)	38, 91, 246, 271
Bme1390I	CCNGG	2 cut(s)	149, 496
Bme18I	GGWCC	3 cut(s)	151, 364, 382
BmgT120I	GGNCC	4 cut(s)	71, 151, 364, 382
BmiI	GGNNCC	4 cut(s)	73, 153, 383, 384
BmrFI	CCNGG	2 cut(s)	149, 496
BmsI	GCATC	1 cut(s)	427
BpuEI	CTTGAG	3 cut(s)	180, 278, 384
BsaI	GGTCTC	1 cut(s)	347
BsaJI	CCNNGG	4 cut(s)	76, 147, 494, 495
BsaWI	WCCGGW	1 cut(s)	430
Bsc4I	CCNNNNNNNGG	1 cut(s)	373
Bse118I	RCCGGY	1 cut(s)	430
Bse1I	ACTGG	2 cut(s)	209, 366
Bse3DI	GCAATG	2 cut(s)	31, 392
BseBI	CCWGG	2 cut(s)	149, 496
BseDI	CCNNGG	4 cut(s)	76, 147, 494, 495
BseGI	GGATG	1 cut(s)	182
BseLI	CCNNNNNNNGG	1 cut(s)	373
BseMI	GCAATG	2 cut(s)	31, 392
BseNI	ACTGG	2 cut(s)	209, 366
BseXI	GCAGC	2 cut(s)	23, 281
BseYI	CCCAGC	1 cut(s)	377
BshFI	GGCC	2 cut(s)	72, 244
BshTI	ACCGGT	1 cut(s)	430
BsiSI	CCGG	1 cut(s)	431
BslFI	GGGAC	2 cut(s)	137, 368
BslI	CCNNNNNNNGG	1 cut(s)	373
BsmAI	GTCTC	1 cut(s)	347
BsmFI	GGGAC	2 cut(s)	137, 368
BsnI	GGCC	2 cut(s)	72, 244
Bso31I	GGTCTC	1 cut(s)	347
Bsp143I	GATC	2 cut(s)	121, 490
BspACI	CCGC	4 cut(s)	87, 90, 144, 245
BspANI	GGCC	2 cut(s)	72, 244
BspLI	GGNNCC	4 cut(s)	73, 153, 383, 384
BspPI	GGATC	1 cut(s)	485
BspTNI	GGTCTC	1 cut(s)	347
BsrDI	GCAATG	2 cut(s)	31, 392
BsrFI	RCCGGY	1 cut(s)	430
BsrI	ACTGG	2 cut(s)	209, 366
BssAI	RCCGGY	1 cut(s)	430
BssECI	CCNNGG	4 cut(s)	76, 147, 494, 495
BssMI	GATC	2 cut(s)	121, 490
Bst2UI	CCWGG	2 cut(s)	149, 496
Bst4CI	ACNGT	3 cut(s)	29, 97, 472
Bst6I	CTCTTC	2 cut(s)	131, 354
BstC8I	GCNNGC	2 cut(s)	41, 230
BstDSI	CCRYGG	1 cut(s)	76
BstF5I	GGATG	1 cut(s)	182
BstKTI	GATC	2 cut(s)	124, 493
BstMAI	GTCTC	1 cut(s)	347
BstMBI	GATC	2 cut(s)	121, 490
BstMWI	GCNNNNNNNGC	2 cut(s)	78, 266
BstNI	CCWGG	2 cut(s)	149, 496
BstNSI	RCATGY	1 cut(s)	176
BstSCI	CCNGG	2 cut(s)	147, 494
BstV1I	GCAGC	2 cut(s)	23, 281
BstX2I	RGATCY	1 cut(s)	490
BstYI	RGATCY	1 cut(s)	490
BsuRI	GGCC	2 cut(s)	72, 244
BtgI	CCRYGG	1 cut(s)	76
BtsCI	GGATG	1 cut(s)	182
BtsIMutI	CAGTG	3 cut(s)	93, 359, 471
Cac8I	GCNNGC	2 cut(s)	41, 230
Cfr10I	RCCGGY	1 cut(s)	430
Cfr13I	GGNCC	4 cut(s)	71, 151, 364, 382
Csp6I	GTAC	1 cut(s)	483
CspAI	ACCGGT	1 cut(s)	430
CviAII	CATG	1 cut(s)	173
CviQI	GTAC	1 cut(s)	483
DpnI	GATC	2 cut(s)	123, 492
DpnII	GATC	2 cut(s)	121, 490
Eam1104I	CTCTTC	2 cut(s)	131, 354
EarI	CTCTTC	2 cut(s)	131, 354
EciI	GGCGGA	1 cut(s)	76
Eco31I	GGTCTC	1 cut(s)	347
Eco47I	GGWCC	3 cut(s)	151, 364, 382
Eco57I	CTGAAG	1 cut(s)	282
EcoO109I	RGGNCCY	2 cut(s)	151, 382
EcoRI	GAATTC	1 cut(s)	416
EcoRII	CCWGG	2 cut(s)	147, 494
FaeI	CATG	1 cut(s)	176
FaiI	YATR	5 cut(s)	174, 210, 339, 357, 477
FaqI	GGGAC	2 cut(s)	137, 368
FatI	CATG	1 cut(s)	172
Fnu4HI	GCNGC	4 cut(s)	37, 90, 245, 270
FokI	GGATG	1 cut(s)	169
Fsp4HI	GCNGC	4 cut(s)	37, 90, 245, 270
FspBI	CTAG	2 cut(s)	218, 273
GluI	GCNGC	4 cut(s)	37, 90, 245, 270
GsaI	CCCAGC	1 cut(s)	381
HaeIII	GGCC	2 cut(s)	72, 244
HapII	CCGG	1 cut(s)	431
Hin1II	CATG	1 cut(s)	176
HinfI	GANTC	5 cut(s)	56, 62, 166, 298, 461
HpaII	CCGG	1 cut(s)	431
HphI	GGTGA	1 cut(s)	293
Hpy188I	TCNGA	1 cut(s)	61
Hpy188III	TCNNGA	3 cut(s)	295, 421, 452
HpyAV	CCTTC	1 cut(s)	152
HpyCH4III	ACNGT	3 cut(s)	29, 97, 472
HpyCH4V	TGCA	2 cut(s)	39, 440
HpyF10VI	GCNNNNNNNGC	2 cut(s)	78, 266
Hsp92II	CATG	1 cut(s)	176
KflI	GGGWCCC	1 cut(s)	382
Kzo9I	GATC	2 cut(s)	121, 490
Lsp1109I	GCAGC	2 cut(s)	23, 281
LweI	GCATC	1 cut(s)	427
MaeI	CTAG	2 cut(s)	218, 273
MaeIII	GTNAC	1 cut(s)	466
MalI	GATC	2 cut(s)	123, 492
MboI	GATC	2 cut(s)	121, 490
MboII	GAAGA	3 cut(s)	118, 275, 341
MflI	RGATCY	1 cut(s)	490
MluCI	AATT	1 cut(s)	416
MlyI	GAGTC	1 cut(s)	50
MmeI	TCCRAC	1 cut(s)	391
MnlI	CCTC	6 cut(s)	234, 302, 313, 357, 363, 408
MspA1I	CMGCKG	1 cut(s)	260
MspI	CCGG	1 cut(s)	431
MspR9I	CCNGG	2 cut(s)	149, 496
MvaI	CCWGG	2 cut(s)	149, 496
MwoI	GCNNNNNNNGC	2 cut(s)	78, 266
NdeII	GATC	2 cut(s)	121, 490
NlaIII	CATG	1 cut(s)	176
NlaIV	GGNNCC	4 cut(s)	73, 153, 383, 384
NmuCI	GTSAC	1 cut(s)	466
NspI	RCATGY	1 cut(s)	176
PasI	CCCWGGG	1 cut(s)	495
PfeI	GAWTC	4 cut(s)	62, 166, 298, 461
PinAI	ACCGGT	1 cut(s)	430
PkrI	GCNGC	4 cut(s)	38, 91, 246, 271
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
PpuMI	RGGWCCY	2 cut(s)	151, 382
Psp5II	RGGWCCY	2 cut(s)	151, 382
Psp6I	CCWGG	2 cut(s)	147, 494
PspFI	CCCAGC	1 cut(s)	377
PspGI	CCWGG	2 cut(s)	147, 494
PspN4I	GGNNCC	4 cut(s)	73, 153, 383, 384
PspPI	GGNCC	4 cut(s)	71, 151, 364, 382
PspPPI	RGGWCCY	2 cut(s)	151, 382
PsuI	RGATCY	1 cut(s)	490
PvuII	CAGCTG	1 cut(s)	260
RsaI	GTAC	1 cut(s)	484
RsaNI	GTAC	1 cut(s)	483
SatI	GCNGC	4 cut(s)	37, 90, 245, 270
Sau3AI	GATC	2 cut(s)	121, 490
Sau96I	GGNCC	4 cut(s)	71, 151, 364, 382
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	2 cut(s)	149, 496
SetI	ASST	6 cut(s)	153, 196, 202, 230, 262, 274
SfaNI	GCATC	1 cut(s)	427
SinI	GGWCC	3 cut(s)	151, 364, 382
SmlI	CTYRAG	3 cut(s)	195, 293, 399
SmoI	CTYRAG	3 cut(s)	195, 293, 399
SpeI	ACTAGT	1 cut(s)	217
Sse9I	AATT	1 cut(s)	416
SsiI	CCGC	4 cut(s)	87, 90, 144, 245
SspMI	CTAG	2 cut(s)	218, 273
StyD4I	CCNGG	2 cut(s)	147, 494
TaaI	ACNGT	3 cut(s)	29, 97, 472
TasI	AATT	1 cut(s)	416
TatI	WGTACW	1 cut(s)	482
TauI	GCSGC	2 cut(s)	92, 247
TfiI	GAWTC	4 cut(s)	62, 166, 298, 461
TscAI	CASTG	3 cut(s)	100, 366, 471
TseFI	GTSAC	1 cut(s)	466
TseI	GCWGC	2 cut(s)	36, 269
Tsp45I	GTSAC	1 cut(s)	466
TspDTI	ATGAA	2 cut(s)	171, 381
TspRI	CASTG	3 cut(s)	100, 366, 471
VpaK11BI	GGWCC	3 cut(s)	151, 364, 382
XapI	RAATTY	1 cut(s)	416
XceI	RCATGY	1 cut(s)	176
XcmI	CCANNNNNNNNNTGG	1 cut(s)	374
XspI	CTAG	2 cut(s)	218, 273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.