Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8299661.1

Orthogroup ID

OG0006546

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 826

Gene Structure 826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8299661.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

atgggaaacgcctttaggcttctttacggtcattgctgcaagcccaccaccacagactccgattctcttggcccccacggcgtttccgccgccactgtcggcgtttcggctctcgcccacgatctcttccactttgaaaacaccgcccaggtcccagaaggactgaatcagcatgtagtttcatccaagaaagctcaagctaactggtatagaaaactagttgagagctggcgagaagcgaggccgccaccaataacagctgaagaagcagctaggcttgttattcaaaccctcaagaatcaccaaaaggctgatgttgagggattattggctttctatggtctccctcttcctcatacactggtccaactttcggctggggtcccaacttcattgcctcaaggagtaaagtttgaattccagacactaccg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004521 GO:0004536 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006308 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0019439 GO:0034641 GO:0034655 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140097 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SNase

Protein Analysis

144

Amino Acids

15.67

Weight (kDa)

7.06

Isoelectric Point (pI)

23.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006546)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40410 AT2G40410
fragaria_vesca	FvH4_7g25420 FvH4_7g25420 FvH4_7g25420
malus_domestica	MD01G1160800.v1.1 MD07G1228600.v1.1
prunus_persica	Prupe.2G258500_v2.0.a1
pyrus_communis	pycom01g17670 pycom07g20700
rosa_chinensis	RchiOBHm_Chr1g0371391 RchiOBHm_Chr3g0455981
rosa_laevigata	RLG00000026967 RLG00000030163
rosa_multiflora	Rmu_co8299661.1_g000001 Rmu_sc0000809.1_g000026 Rmu_sc0027221.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232720 Rroxscaffold_4G00285730
rosa_rugosa	Rorug01G0363600
rosa_samantha	Rh1AG373700 Rh1BG337100 Rh1DG368100 Rh5BG126800
rosa_wichuraiana	Rw1G032870 Rw3G017510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	87, 90, 144, 245
AcsI	RAATTY	1 cut(s)	416
AcuI	CTGAAG	1 cut(s)	282
AfiI	CCNNNNNNNGG	1 cut(s)	373
AgsI	TTSAA	3 cut(s)	137, 287, 416
AhlI	ACTAGT	1 cut(s)	217
AjnI	CCWGG	1 cut(s)	147
AluBI	AGCT	5 cut(s)	194, 200, 228, 260, 272
AluI	AGCT	5 cut(s)	194, 200, 228, 260, 272
Alw26I	GTCTC	1 cut(s)	347
AoxI	GGCC	2 cut(s)	70, 242
ApeKI	GCWGC	2 cut(s)	36, 269
ApoI	RAATTY	1 cut(s)	416
AspS9I	GGNCC	4 cut(s)	71, 151, 364, 382
AsuHPI	GGTGA	1 cut(s)	293
AvaII	GGWCC	3 cut(s)	151, 364, 382
BbvI	GCAGC	2 cut(s)	23, 281
BceAI	ACGGC	1 cut(s)	94
BciT130I	CCWGG	1 cut(s)	149
BcoDI	GTCTC	1 cut(s)	347
BcuI	ACTAGT	1 cut(s)	217
BfaI	CTAG	2 cut(s)	218, 273
BglI	GCCNNNNNGGC	1 cut(s)	78
BisI	GCNGC	4 cut(s)	37, 90, 245, 270
BlsI	GCNGC	4 cut(s)	38, 91, 246, 271
Bme1390I	CCNGG	1 cut(s)	149
Bme18I	GGWCC	3 cut(s)	151, 364, 382
BmgT120I	GGNCC	4 cut(s)	71, 151, 364, 382
BmiI	GGNNCC	4 cut(s)	73, 153, 383, 384
BmrFI	CCNGG	1 cut(s)	149
BpuEI	CTTGAG	3 cut(s)	180, 278, 384
BsaI	GGTCTC	1 cut(s)	347
BsaJI	CCNNGG	2 cut(s)	76, 147
Bsc4I	CCNNNNNNNGG	1 cut(s)	373
Bse1I	ACTGG	2 cut(s)	209, 366
Bse3DI	GCAATG	2 cut(s)	31, 392
BseBI	CCWGG	1 cut(s)	149
BseDI	CCNNGG	2 cut(s)	76, 147
BseGI	GGATG	1 cut(s)	182
BseLI	CCNNNNNNNGG	1 cut(s)	373
BseMI	GCAATG	2 cut(s)	31, 392
BseNI	ACTGG	2 cut(s)	209, 366
BseXI	GCAGC	2 cut(s)	23, 281
BseYI	CCCAGC	1 cut(s)	377
BshFI	GGCC	2 cut(s)	72, 244
BslFI	GGGAC	2 cut(s)	137, 368
BslI	CCNNNNNNNGG	1 cut(s)	373
BsmAI	GTCTC	1 cut(s)	347
BsmFI	GGGAC	2 cut(s)	137, 368
BsnI	GGCC	2 cut(s)	72, 244
Bso31I	GGTCTC	1 cut(s)	347
Bsp143I	GATC	1 cut(s)	121
BspACI	CCGC	4 cut(s)	87, 90, 144, 245
BspANI	GGCC	2 cut(s)	72, 244
BspLI	GGNNCC	4 cut(s)	73, 153, 383, 384
BspTNI	GGTCTC	1 cut(s)	347
BsrDI	GCAATG	2 cut(s)	31, 392
BsrI	ACTGG	2 cut(s)	209, 366
BssECI	CCNNGG	2 cut(s)	76, 147
BssMI	GATC	1 cut(s)	121
Bst2UI	CCWGG	1 cut(s)	149
Bst4CI	ACNGT	2 cut(s)	29, 97
Bst6I	CTCTTC	2 cut(s)	131, 354
BstC8I	GCNNGC	2 cut(s)	41, 230
BstDSI	CCRYGG	1 cut(s)	76
BstF5I	GGATG	1 cut(s)	182
BstKTI	GATC	1 cut(s)	124
BstMAI	GTCTC	1 cut(s)	347
BstMBI	GATC	1 cut(s)	121
BstMWI	GCNNNNNNNGC	2 cut(s)	78, 266
BstNI	CCWGG	1 cut(s)	149
BstNSI	RCATGY	1 cut(s)	176
BstSCI	CCNGG	1 cut(s)	147
BstV1I	GCAGC	2 cut(s)	23, 281
BsuRI	GGCC	2 cut(s)	72, 244
BtgI	CCRYGG	1 cut(s)	76
BtsCI	GGATG	1 cut(s)	182
BtsIMutI	CAGTG	2 cut(s)	93, 359
Cac8I	GCNNGC	2 cut(s)	41, 230
Cfr13I	GGNCC	4 cut(s)	71, 151, 364, 382
CviAII	CATG	1 cut(s)	173
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
Eam1104I	CTCTTC	2 cut(s)	131, 354
EarI	CTCTTC	2 cut(s)	131, 354
EciI	GGCGGA	1 cut(s)	76
Eco31I	GGTCTC	1 cut(s)	347
Eco47I	GGWCC	3 cut(s)	151, 364, 382
Eco57I	CTGAAG	1 cut(s)	282
EcoO109I	RGGNCCY	2 cut(s)	151, 382
EcoRI	GAATTC	1 cut(s)	416
EcoRII	CCWGG	1 cut(s)	147
FaeI	CATG	1 cut(s)	176
FaiI	YATR	4 cut(s)	174, 210, 339, 357
FaqI	GGGAC	2 cut(s)	137, 368
FatI	CATG	1 cut(s)	172
Fnu4HI	GCNGC	4 cut(s)	37, 90, 245, 270
FokI	GGATG	1 cut(s)	169
Fsp4HI	GCNGC	4 cut(s)	37, 90, 245, 270
FspBI	CTAG	2 cut(s)	218, 273
GluI	GCNGC	4 cut(s)	37, 90, 245, 270
GsaI	CCCAGC	1 cut(s)	381
HaeIII	GGCC	2 cut(s)	72, 244
Hin1II	CATG	1 cut(s)	176
HinfI	GANTC	4 cut(s)	56, 62, 166, 298
HphI	GGTGA	1 cut(s)	293
Hpy188I	TCNGA	1 cut(s)	61
Hpy188III	TCNNGA	2 cut(s)	295, 421
HpyAV	CCTTC	1 cut(s)	152
HpyCH4III	ACNGT	2 cut(s)	29, 97
HpyCH4V	TGCA	1 cut(s)	39
HpyF10VI	GCNNNNNNNGC	2 cut(s)	78, 266
Hsp92II	CATG	1 cut(s)	176
KflI	GGGWCCC	1 cut(s)	382
Kzo9I	GATC	1 cut(s)	121
LpnPI	CCDG	7 cut(s)	134, 161, 168, 190, 214, 347, 363
Lsp1109I	GCAGC	2 cut(s)	23, 281
MaeI	CTAG	2 cut(s)	218, 273
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MboII	GAAGA	3 cut(s)	118, 275, 341
MluCI	AATT	1 cut(s)	416
MlyI	GAGTC	1 cut(s)	50
MmeI	TCCRAC	1 cut(s)	391
MnlI	CCTC	6 cut(s)	234, 302, 313, 357, 363, 408
MspA1I	CMGCKG	1 cut(s)	260
MspR9I	CCNGG	1 cut(s)	149
MvaI	CCWGG	1 cut(s)	149
MwoI	GCNNNNNNNGC	2 cut(s)	78, 266
NdeII	GATC	1 cut(s)	121
NlaIII	CATG	1 cut(s)	176
NlaIV	GGNNCC	4 cut(s)	73, 153, 383, 384
NspI	RCATGY	1 cut(s)	176
PfeI	GAWTC	3 cut(s)	62, 166, 298
PkrI	GCNGC	4 cut(s)	38, 91, 246, 271
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
PpuMI	RGGWCCY	2 cut(s)	151, 382
Psp5II	RGGWCCY	2 cut(s)	151, 382
Psp6I	CCWGG	1 cut(s)	147
PspFI	CCCAGC	1 cut(s)	377
PspGI	CCWGG	1 cut(s)	147
PspN4I	GGNNCC	4 cut(s)	73, 153, 383, 384
PspPI	GGNCC	4 cut(s)	71, 151, 364, 382
PspPPI	RGGWCCY	2 cut(s)	151, 382
PvuII	CAGCTG	1 cut(s)	260
SatI	GCNGC	4 cut(s)	37, 90, 245, 270
Sau3AI	GATC	1 cut(s)	121
Sau96I	GGNCC	4 cut(s)	71, 151, 364, 382
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	1 cut(s)	149
SetI	ASST	6 cut(s)	153, 196, 202, 230, 262, 274
SinI	GGWCC	3 cut(s)	151, 364, 382
SmlI	CTYRAG	3 cut(s)	195, 293, 399
SmoI	CTYRAG	3 cut(s)	195, 293, 399
SpeI	ACTAGT	1 cut(s)	217
Sse9I	AATT	1 cut(s)	416
SsiI	CCGC	4 cut(s)	87, 90, 144, 245
SspMI	CTAG	2 cut(s)	218, 273
StyD4I	CCNGG	1 cut(s)	147
TaaI	ACNGT	2 cut(s)	29, 97
TasI	AATT	1 cut(s)	416
TauI	GCSGC	2 cut(s)	92, 247
TfiI	GAWTC	3 cut(s)	62, 166, 298
TscAI	CASTG	2 cut(s)	100, 366
TseI	GCWGC	2 cut(s)	36, 269
TspDTI	ATGAA	2 cut(s)	171, 381
TspRI	CASTG	2 cut(s)	100, 366
VpaK11BI	GGWCC	3 cut(s)	151, 364, 382
XapI	RAATTY	1 cut(s)	416
XceI	RCATGY	1 cut(s)	176
XcmI	CCANNNNNNNNNTGG	1 cut(s)	374
XspI	CTAG	2 cut(s)	218, 273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.