Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0006546

Physical Location & Seq

Genomic Coordinates Reverse (-)

7305187 .. 7307164

Gene Structure 1978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026967

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGGAAACGCCTTTAGGCTTCTTTGCGGTCTTTGCTGCAAGCCCACCACCACAGACTCCGATTCTCTTGGCCCCCACGGCGTTTCCGCCGCCACTGTCGGCGTTTCGGCTCTCGCCCACGATCTCTTCCACTTTGAGAACACCGCCCAGGTCCCAGAAGGACTGAATCAGCATGTAGTTTCATCCAAGAAAGCTCAAGCTAACTGGTATAGAAAACTAGTTGAGAGCTGGCGAGAAGCGAGGCCGCCACCAATAACAGCTGAAGAAGCAGCTAGGCTTGTTATTCAAACCCTCAAGAATCACCAAAAGGCTGATGTTGAGGGATTATTGGCTTTCTATGGTCTCCCTCTTCCTCATACTCTGGTCCAACTTTCGGCTGGGGTCCCAACTTCATTGCCTCAAGGAGTAAAGTTTGAATTCCAGACACTACCGGTTGATGCAAAAGCAGTTCAAGATGGCGATTCAGTGACAGTCTATGTAAGTACAGCAGATCCCAGGGAGTCATCATGTGTTCCGAGCGAGGTACAGTTGGCGACCATCCAAAGATCAGAAGCTCGTGAGAAGAAGAATTATACCAAGGCAGATGCACTTCACAAAAAGATCATTGACGCTGGATACCGGGTACTGCAGTTTCAAAACGAGGAGGTCCTTGCGCGGAAGTATAGGATTCGACTGAGGGGTATAGACGCACCAGAGGGTAAAATGCCTTATGGAAAAGAAGCCAGAGATGAGCTGGTTAAGCTTCTTCAGGGAAAGTGTTTGAGGGTCCTTGTCTATGGGGTAGATCGTTATGGCCGTGTTGTAGGTGACATATATAGCAATGGCATATTTGCACAGGAAGTAATGCTGAAGAAGGGTTGTGCATGGCATTACACAGCCTATGACCAACGCCCGGAACTTGCAAAATGGGAGAGAGAAGCTCAAGTGAAGCGAGTTGGGTTATGGGCTTCATCAAACCCTGAGAAGCCATGGGAATGGAGAAAAGATAGACGTGAAGGCAATTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004521 GO:0004536 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006308 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0019439 GO:0034641 GO:0034655 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140097 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SNase

Protein Analysis

336

Amino Acids

37.58

Weight (kDa)

8.96

Isoelectric Point (pI)

29.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNase	PF00565	222 - 316	2.9e-24	Staphylococcal nuclease homologue

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006546)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40410 AT2G40410
fragaria_vesca	FvH4_7g25420 FvH4_7g25420 FvH4_7g25420
malus_domestica	MD01G1160800.v1.1 MD07G1228600.v1.1
prunus_persica	Prupe.2G258500_v2.0.a1
pyrus_communis	pycom01g17670 pycom07g20700
rosa_chinensis	RchiOBHm_Chr1g0371391 RchiOBHm_Chr3g0455981
rosa_laevigata	RLG00000026967 RLG00000030163
rosa_multiflora	Rmu_co8299661.1_g000001 Rmu_sc0000809.1_g000026 Rmu_sc0027221.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232720 Rroxscaffold_4G00285730
rosa_rugosa	Rorug01G0363600
rosa_samantha	Rh1AG373700 Rh1BG337100 Rh1DG368100 Rh5BG126800
rosa_wichuraiana	Rw1G032870 Rw3G017510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	655
AciI	CCGC	6 cut(s)	27, 87, 90, 144, 245, 655
AclWI	GGATC	1 cut(s)	485
AcoI	YGGCCR	1 cut(s)	793
AcsI	RAATTY	1 cut(s)	416
AcuI	CTGAAG	3 cut(s)	282, 731, 869
AfaI	GTAC	3 cut(s)	484, 525, 624
AfiI	CCNNNNNNNGG	2 cut(s)	373, 892
AgeI	ACCGGT	1 cut(s)	430
AgsI	TTSAA	4 cut(s)	287, 416, 452, 635
AhlI	ACTAGT	1 cut(s)	217
AjiI	CACGTC	1 cut(s)	992
AjnI	CCWGG	2 cut(s)	147, 494
AluBI	AGCT	9 cut(s)	194, 200, 228, 260, 272, 554, 733, 742, 920
AluI	AGCT	9 cut(s)	194, 200, 228, 260, 272, 554, 733, 742, 920
Alw26I	GTCTC	1 cut(s)	347
AlwI	GGATC	1 cut(s)	485
AoxI	GGCC	3 cut(s)	70, 242, 793
ApeKI	GCWGC	2 cut(s)	36, 269
ApoI	RAATTY	1 cut(s)	416
AsiGI	ACCGGT	1 cut(s)	430
AspLEI	GCGC	1 cut(s)	655
AspS9I	GGNCC	6 cut(s)	71, 151, 364, 382, 646, 766
AsuC2I	CCSGG	2 cut(s)	620, 893
AsuHPI	GGTGA	2 cut(s)	293, 818
AvaII	GGWCC	5 cut(s)	151, 364, 382, 646, 766
BaeI	ACNNNNGTAYC	2 cut(s)	614, 647
BauI	CACGAG	1 cut(s)	555
BbvI	GCAGC	2 cut(s)	23, 281
BccI	CCATC	2 cut(s)	449, 545
BceAI	ACGGC	2 cut(s)	94, 780
BciT130I	CCWGG	2 cut(s)	149, 496
BciVI	GTATCC	1 cut(s)	608
BcnI	CCSGG	2 cut(s)	620, 893
BcoDI	GTCTC	1 cut(s)	347
BcuI	ACTAGT	1 cut(s)	217
BfaI	CTAG	2 cut(s)	218, 273
BfmI	CTRYAG	1 cut(s)	626
BfuI	GTATCC	1 cut(s)	608
BglI	GCCNNNNNGGC	1 cut(s)	78
BisI	GCNGC	4 cut(s)	37, 90, 245, 270
BlsI	GCNGC	4 cut(s)	38, 91, 246, 271
Bme1390I	CCNGG	4 cut(s)	149, 496, 620, 893
Bme18I	GGWCC	5 cut(s)	151, 364, 382, 646, 766
BmgBI	CACGTC	1 cut(s)	992
BmgT120I	GGNCC	6 cut(s)	71, 151, 364, 382, 646, 766
BmiI	GGNNCC	5 cut(s)	73, 153, 383, 384, 767
BmrFI	CCNGG	4 cut(s)	149, 496, 620, 893
BmsI	GCATC	2 cut(s)	427, 574
BplI	GAGNNNNNCTC	2 cut(s)	904, 936
BpuEI	CTTGAG	4 cut(s)	180, 278, 384, 906
BpuMI	CCSGG	2 cut(s)	620, 893
BsaI	GGTCTC	1 cut(s)	347
BsaJI	CCNNGG	6 cut(s)	76, 147, 494, 495, 576, 968
BsaWI	WCCGGW	1 cut(s)	430
Bsc4I	CCNNNNNNNGG	2 cut(s)	373, 892
Bse118I	RCCGGY	1 cut(s)	430
Bse1I	ACTGG	1 cut(s)	209
Bse3DI	GCAATG	2 cut(s)	392, 826
BseBI	CCWGG	2 cut(s)	149, 496
BseDI	CCNNGG	6 cut(s)	76, 147, 494, 495, 576, 968
BseGI	GGATG	2 cut(s)	182, 537
BseLI	CCNNNNNNNGG	2 cut(s)	373, 892
BseMI	GCAATG	2 cut(s)	392, 826
BseMII	CTCAG	2 cut(s)	665, 951
BseNI	ACTGG	1 cut(s)	209
BseRI	GAGGAG	1 cut(s)	656
BseXI	GCAGC	2 cut(s)	23, 281
BseYI	CCCAGC	1 cut(s)	377
Bsh1236I	CGCG	1 cut(s)	655
BshFI	GGCC	3 cut(s)	72, 244, 795
BshTI	ACCGGT	1 cut(s)	430
BsiSI	CCGG	3 cut(s)	431, 619, 893
BslFI	GGGAC	2 cut(s)	137, 368
BslI	CCNNNNNNNGG	2 cut(s)	373, 892
BsmAI	GTCTC	1 cut(s)	347
BsmFI	GGGAC	2 cut(s)	137, 368
BsnI	GGCC	3 cut(s)	72, 244, 795
Bso31I	GGTCTC	1 cut(s)	347
Bsp143I	GATC	5 cut(s)	121, 490, 545, 600, 784
Bsp19I	CCATGG	1 cut(s)	968
BspACI	CCGC	6 cut(s)	27, 87, 90, 144, 245, 655
BspANI	GGCC	3 cut(s)	72, 244, 795
BspCNI	CTCAG	2 cut(s)	666, 952
BspFNI	CGCG	1 cut(s)	655
BspLI	GGNNCC	5 cut(s)	73, 153, 383, 384, 767
BspMAI	CTGCAG	1 cut(s)	630
BspPI	GGATC	1 cut(s)	485
BspTNI	GGTCTC	1 cut(s)	347
BsrDI	GCAATG	2 cut(s)	392, 826
BsrFI	RCCGGY	1 cut(s)	430
BsrI	ACTGG	1 cut(s)	209
BssAI	RCCGGY	1 cut(s)	430
BssECI	CCNNGG	6 cut(s)	76, 147, 494, 495, 576, 968
BssMI	GATC	5 cut(s)	121, 490, 545, 600, 784
BssSI	CACGAG	1 cut(s)	555
BssT1I	CCWWGG	2 cut(s)	576, 968
Bst2BI	CACGAG	1 cut(s)	555
Bst2UI	CCWGG	2 cut(s)	149, 496
Bst4CI	ACNGT	3 cut(s)	97, 472, 528
Bst6I	CTCTTC	2 cut(s)	131, 354
BstC8I	GCNNGC	2 cut(s)	41, 230
BstDEI	CTNAG	2 cut(s)	674, 960
BstDSI	CCRYGG	2 cut(s)	76, 968
BstF5I	GGATG	2 cut(s)	182, 537
BstFNI	CGCG	1 cut(s)	655
BstHHI	GCGC	1 cut(s)	655
BstKTI	GATC	5 cut(s)	124, 493, 548, 603, 787
BstMAI	GTCTC	1 cut(s)	347
BstMBI	GATC	5 cut(s)	121, 490, 545, 600, 784
BstMWI	GCNNNNNNNGC	4 cut(s)	33, 78, 266, 739
BstNI	CCWGG	2 cut(s)	149, 496
BstNSI	RCATGY	1 cut(s)	176
BstSCI	CCNGG	4 cut(s)	147, 494, 618, 891
BstSFI	CTRYAG	1 cut(s)	626
BstUI	CGCG	1 cut(s)	655
BstV1I	GCAGC	2 cut(s)	23, 281
BstX2I	RGATCY	1 cut(s)	490
BstXI	CCANNNNNNTGG	1 cut(s)	975
BstYI	RGATCY	1 cut(s)	490
BsuI	GTATCC	1 cut(s)	608
BsuRI	GGCC	3 cut(s)	72, 244, 795
BtgI	CCRYGG	2 cut(s)	76, 968
BtrI	CACGTC	1 cut(s)	992
BtsCI	GGATG	2 cut(s)	182, 537
BtsIMutI	CAGTG	2 cut(s)	93, 471
Cac8I	GCNNGC	2 cut(s)	41, 230
CfoI	GCGC	1 cut(s)	655
Cfr10I	RCCGGY	1 cut(s)	430
Cfr13I	GGNCC	6 cut(s)	71, 151, 364, 382, 646, 766
CseI	GACGC	2 cut(s)	617, 695
Csp6I	GTAC	3 cut(s)	483, 524, 623
CspAI	ACCGGT	1 cut(s)	430
CviAII	CATG	4 cut(s)	173, 507, 864, 969
CviQI	GTAC	3 cut(s)	483, 524, 623
DdeI	CTNAG	2 cut(s)	674, 960
DpnI	GATC	5 cut(s)	123, 492, 547, 602, 786
DpnII	GATC	5 cut(s)	121, 490, 545, 600, 784
EaeI	YGGCCR	1 cut(s)	793
Eam1104I	CTCTTC	2 cut(s)	131, 354
EarI	CTCTTC	2 cut(s)	131, 354
EciI	GGCGGA	1 cut(s)	76
Eco130I	CCWWGG	2 cut(s)	576, 968
Eco31I	GGTCTC	1 cut(s)	347
Eco47I	GGWCC	5 cut(s)	151, 364, 382, 646, 766
Eco57I	CTGAAG	3 cut(s)	282, 731, 869
EcoO109I	RGGNCCY	4 cut(s)	151, 382, 646, 766
EcoRI	GAATTC	1 cut(s)	416
EcoRII	CCWGG	2 cut(s)	147, 494
EcoT14I	CCWWGG	2 cut(s)	576, 968
ErhI	CCWWGG	2 cut(s)	576, 968
FaeI	CATG	4 cut(s)	176, 510, 867, 972
FaqI	GGGAC	2 cut(s)	137, 368
FatI	CATG	4 cut(s)	172, 506, 863, 968
Fnu4HI	GCNGC	4 cut(s)	37, 90, 245, 270
FokI	GGATG	2 cut(s)	169, 524
Fsp4HI	GCNGC	4 cut(s)	37, 90, 245, 270
FspBI	CTAG	2 cut(s)	218, 273
GlaI	GCGC	1 cut(s)	654
GluI	GCNGC	4 cut(s)	37, 90, 245, 270
GsaI	CCCAGC	1 cut(s)	381
HaeIII	GGCC	3 cut(s)	72, 244, 795
HapII	CCGG	3 cut(s)	431, 619, 893
HgaI	GACGC	2 cut(s)	617, 695
HhaI	GCGC	1 cut(s)	655
Hin1II	CATG	4 cut(s)	176, 510, 867, 972
Hin6I	GCGC	1 cut(s)	653
HinP1I	GCGC	1 cut(s)	653
HindIII	AAGCTT	1 cut(s)	740
HinfI	GANTC	7 cut(s)	56, 62, 166, 298, 461, 500, 667
HpaII	CCGG	3 cut(s)	431, 619, 893
HphI	GGTGA	2 cut(s)	293, 818
Hpy188I	TCNGA	3 cut(s)	61, 516, 550
Hpy188III	TCNNGA	4 cut(s)	295, 421, 452, 557
HpyAV	CCTTC	3 cut(s)	152, 847, 989
HpyCH4III	ACNGT	3 cut(s)	97, 472, 528
HpyCH4IV	ACGT	1 cut(s)	991
HpyCH4V	TGCA	7 cut(s)	39, 440, 587, 628, 833, 863, 902
HpyF10VI	GCNNNNNNNGC	4 cut(s)	33, 78, 266, 739
HpyF3I	CTNAG	2 cut(s)	674, 960
HpySE526I	ACGT	1 cut(s)	991
Hsp92II	CATG	4 cut(s)	176, 510, 867, 972
HspAI	GCGC	1 cut(s)	653
KflI	GGGWCCC	1 cut(s)	382
Kzo9I	GATC	5 cut(s)	121, 490, 545, 600, 784
Lsp1109I	GCAGC	2 cut(s)	23, 281
LweI	GCATC	2 cut(s)	427, 574
MaeI	CTAG	2 cut(s)	218, 273
MaeII	ACGT	1 cut(s)	991
MaeIII	GTNAC	2 cut(s)	466, 806
MalI	GATC	5 cut(s)	123, 492, 547, 602, 786
MboI	GATC	5 cut(s)	121, 490, 545, 600, 784
MboII	GAAGA	7 cut(s)	118, 275, 341, 574, 577, 737, 862
MflI	RGATCY	1 cut(s)	490
MluCI	AATT	3 cut(s)	416, 568, 1000
MlyI	GAGTC	2 cut(s)	50, 509
MmeI	TCCRAC	1 cut(s)	391
MseI	TTAA	1 cut(s)	738
MslI	CAYNNNNRTG	1 cut(s)	973
MspA1I	CMGCKG	1 cut(s)	260
MspI	CCGG	3 cut(s)	431, 619, 893
MspR9I	CCNGG	4 cut(s)	149, 496, 620, 893
MvaI	CCWGG	2 cut(s)	149, 496
MvnI	CGCG	1 cut(s)	655
MwoI	GCNNNNNNNGC	4 cut(s)	33, 78, 266, 739
NciI	CCSGG	2 cut(s)	620, 893
NcoI	CCATGG	1 cut(s)	968
NdeII	GATC	5 cut(s)	121, 490, 545, 600, 784
NlaIII	CATG	4 cut(s)	176, 510, 867, 972
NlaIV	GGNNCC	5 cut(s)	73, 153, 383, 384, 767
NmuCI	GTSAC	2 cut(s)	466, 806
NspI	RCATGY	1 cut(s)	176
PasI	CCCWGGG	1 cut(s)	495
PcsI	WCGNNNNNNNCGW	1 cut(s)	793
PfeI	GAWTC	5 cut(s)	62, 166, 298, 461, 667
PinAI	ACCGGT	1 cut(s)	430
PkrI	GCNGC	4 cut(s)	38, 91, 246, 271
PleI	GAGTC	2 cut(s)	50, 508
PpsI	GAGTC	2 cut(s)	50, 508
PpuMI	RGGWCCY	4 cut(s)	151, 382, 646, 766
Psp5II	RGGWCCY	4 cut(s)	151, 382, 646, 766
Psp6I	CCWGG	2 cut(s)	147, 494
PspFI	CCCAGC	1 cut(s)	377
PspGI	CCWGG	2 cut(s)	147, 494
PspN4I	GGNNCC	5 cut(s)	73, 153, 383, 384, 767
PspPI	GGNCC	6 cut(s)	71, 151, 364, 382, 646, 766
PspPPI	RGGWCCY	4 cut(s)	151, 382, 646, 766
PstI	CTGCAG	1 cut(s)	630
PsuI	RGATCY	1 cut(s)	490
PvuII	CAGCTG	1 cut(s)	260
RsaI	GTAC	3 cut(s)	484, 525, 624
RsaNI	GTAC	3 cut(s)	483, 524, 623
RseI	CAYNNNNRTG	1 cut(s)	973
SaqAI	TTAA	1 cut(s)	738
SatI	GCNGC	4 cut(s)	37, 90, 245, 270
Sau3AI	GATC	5 cut(s)	121, 490, 545, 600, 784
Sau96I	GGNCC	6 cut(s)	71, 151, 364, 382, 646, 766
SchI	GAGTC	2 cut(s)	50, 509
ScrFI	CCNGG	4 cut(s)	149, 496, 620, 893
SfaNI	GCATC	2 cut(s)	427, 574
SfcI	CTRYAG	1 cut(s)	626
SinI	GGWCC	5 cut(s)	151, 364, 382, 646, 766
SmiMI	CAYNNNNRTG	1 cut(s)	973
SmlI	CTYRAG	4 cut(s)	195, 293, 399, 921
SmoI	CTYRAG	4 cut(s)	195, 293, 399, 921
SpeI	ACTAGT	1 cut(s)	217
Sse9I	AATT	3 cut(s)	416, 568, 1000
SsiI	CCGC	6 cut(s)	27, 87, 90, 144, 245, 655
SspMI	CTAG	2 cut(s)	218, 273
StyD4I	CCNGG	4 cut(s)	147, 494, 618, 891
StyI	CCWWGG	2 cut(s)	576, 968
TaaI	ACNGT	3 cut(s)	97, 472, 528
TaiI	ACGT	1 cut(s)	994
TaqI	TCGA	1 cut(s)	670
TasI	AATT	3 cut(s)	416, 568, 1000
TatI	WGTACW	1 cut(s)	482
TauI	GCSGC	2 cut(s)	92, 247
TfiI	GAWTC	5 cut(s)	62, 166, 298, 461, 667
Tru1I	TTAA	1 cut(s)	738
Tru9I	TTAA	1 cut(s)	738
TscAI	CASTG	2 cut(s)	100, 471
TseFI	GTSAC	2 cut(s)	466, 806
TseI	GCWGC	2 cut(s)	36, 269
Tsp45I	GTSAC	2 cut(s)	466, 806
TspDTI	ATGAA	3 cut(s)	171, 381, 939
TspRI	CASTG	2 cut(s)	100, 471
VpaK11BI	GGWCC	5 cut(s)	151, 364, 382, 646, 766
XapI	RAATTY	1 cut(s)	416
XceI	RCATGY	1 cut(s)	176
XcmI	CCANNNNNNNNNTGG	2 cut(s)	374, 730
XspI	CTAG	2 cut(s)	218, 273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.