Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0006546

Physical Location & Seq

Genomic Coordinates Reverse (-)

56609336 .. 56609954

Gene Structure 619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030163

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGTTGAGTGATTATTGGGTTTTTAAGGTCTCCCTCTTCCTCATACTCTGGTCCAACTTTCCGCTGGGGTCTCAACTTCCGGCTGGGGTCCCAACTTCATTGCCTCAAGGAGTAAAGTTTGAATTCCAGACACTACGGGTTGATGCAAAAGCAGTTCAAGATGGCGATTCAGTGACAGTCTATGTAAGTACAGCAGATCCCAGGGAGTCATCCTGTCTTCCGAGCGAGGTACAGATGGCGATCATCCAAAGATCAAAAGCTCGCGAGAAGAAGAATTATACCAAGGCAGATGCACTCCACAAAAAGATCATTGATGCTGGTTACCGGTTGGATATTCATATGCCTCTTAAAGTCTTAATAGAACTCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004521 GO:0004536 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006308 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0019439 GO:0034641 GO:0034655 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140097 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SNase

Protein Analysis

124

Amino Acids

13.86

Weight (kDa)

8.71

Isoelectric Point (pI)

41.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006546)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40410 AT2G40410
fragaria_vesca	FvH4_7g25420 FvH4_7g25420 FvH4_7g25420
malus_domestica	MD01G1160800.v1.1 MD07G1228600.v1.1
prunus_persica	Prupe.2G258500_v2.0.a1
pyrus_communis	pycom01g17670 pycom07g20700
rosa_chinensis	RchiOBHm_Chr1g0371391 RchiOBHm_Chr3g0455981
rosa_laevigata	RLG00000026967 RLG00000030163
rosa_multiflora	Rmu_co8299661.1_g000001 Rmu_sc0000809.1_g000026 Rmu_sc0027221.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232720 Rroxscaffold_4G00285730
rosa_rugosa	Rorug01G0363600
rosa_samantha	Rh1AG373700 Rh1BG337100 Rh1DG368100 Rh5BG126800
rosa_wichuraiana	Rw1G032870 Rw3G017510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	264
AciI	CCGC	1 cut(s)	62
AclWI	GGATC	1 cut(s)	191
AcsI	RAATTY	1 cut(s)	122
AfaI	GTAC	2 cut(s)	190, 231
AgeI	ACCGGT	1 cut(s)	324
AgsI	TTSAA	2 cut(s)	122, 158
AjnI	CCWGG	1 cut(s)	200
AluBI	AGCT	1 cut(s)	260
AluI	AGCT	1 cut(s)	260
Alw26I	GTCTC	2 cut(s)	34, 75
AlwI	GGATC	1 cut(s)	191
ApoI	RAATTY	1 cut(s)	122
AsiGI	ACCGGT	1 cut(s)	324
AspS9I	GGNCC	2 cut(s)	51, 88
AvaII	GGWCC	2 cut(s)	51, 88
BbsI	GAAGAC	1 cut(s)	209
BccI	CCATC	2 cut(s)	155, 229
BciT130I	CCWGG	1 cut(s)	202
BcoDI	GTCTC	2 cut(s)	34, 75
Bme1390I	CCNGG	1 cut(s)	202
Bme18I	GGWCC	2 cut(s)	51, 88
BmgT120I	GGNCC	2 cut(s)	51, 88
BmiI	GGNNCC	2 cut(s)	89, 90
BmrFI	CCNGG	1 cut(s)	202
BmsI	GCATC	3 cut(s)	133, 280, 304
BpiI	GAAGAC	1 cut(s)	209
BpuEI	CTTGAG	1 cut(s)	90
BsaBI	GATNNNNATC	1 cut(s)	239
BsaI	GGTCTC	2 cut(s)	34, 75
BsaJI	CCNNGG	3 cut(s)	200, 201, 282
BsaWI	WCCGGW	1 cut(s)	324
Bse118I	RCCGGY	1 cut(s)	324
Bse3DI	GCAATG	1 cut(s)	98
Bse8I	GATNNNNATC	1 cut(s)	239
BseBI	CCWGG	1 cut(s)	202
BseDI	CCNNGG	3 cut(s)	200, 201, 282
BseGI	GGATG	2 cut(s)	209, 243
BseJI	GATNNNNATC	1 cut(s)	239
BseMI	GCAATG	1 cut(s)	98
BseYI	CCCAGC	2 cut(s)	64, 83
Bsh1236I	CGCG	1 cut(s)	264
BshTI	ACCGGT	1 cut(s)	324
BsiSI	CCGG	2 cut(s)	80, 325
BslFI	GGGAC	1 cut(s)	74
BsmAI	GTCTC	2 cut(s)	34, 75
BsmFI	GGGAC	1 cut(s)	74
Bso31I	GGTCTC	2 cut(s)	34, 75
Bsp143I	GATC	4 cut(s)	196, 240, 251, 306
Bsp68I	TCGCGA	1 cut(s)	264
BspACI	CCGC	1 cut(s)	62
BspFNI	CGCG	1 cut(s)	264
BspLI	GGNNCC	2 cut(s)	89, 90
BspPI	GGATC	1 cut(s)	191
BspTNI	GGTCTC	2 cut(s)	34, 75
BsrDI	GCAATG	1 cut(s)	98
BsrFI	RCCGGY	1 cut(s)	324
BssAI	RCCGGY	1 cut(s)	324
BssECI	CCNNGG	3 cut(s)	200, 201, 282
BssMI	GATC	4 cut(s)	196, 240, 251, 306
BssT1I	CCWWGG	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	202
Bst4CI	ACNGT	1 cut(s)	178
Bst6I	CTCTTC	1 cut(s)	41
BstC8I	GCNNGC	1 cut(s)	262
BstEII	GGTNACC	1 cut(s)	320
BstF5I	GGATG	2 cut(s)	209, 243
BstFNI	CGCG	1 cut(s)	264
BstKTI	GATC	4 cut(s)	199, 243, 254, 309
BstMAI	GTCTC	2 cut(s)	34, 75
BstMBI	GATC	4 cut(s)	196, 240, 251, 306
BstNI	CCWGG	1 cut(s)	202
BstPI	GGTNACC	1 cut(s)	320
BstSCI	CCNGG	1 cut(s)	200
BstUI	CGCG	1 cut(s)	264
BstV2I	GAAGAC	1 cut(s)	209
BstX2I	RGATCY	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	196
BtsCI	GGATG	2 cut(s)	209, 243
BtsIMutI	CAGTG	1 cut(s)	177
BtuMI	TCGCGA	1 cut(s)	264
Cac8I	GCNNGC	1 cut(s)	262
Cfr10I	RCCGGY	1 cut(s)	324
Cfr13I	GGNCC	2 cut(s)	51, 88
Csp6I	GTAC	2 cut(s)	189, 230
CspAI	ACCGGT	1 cut(s)	324
CviJI	RGCY	2 cut(s)	83, 260
CviKI_1	RGCY	2 cut(s)	83, 260
CviQI	GTAC	2 cut(s)	189, 230
DpnI	GATC	4 cut(s)	198, 242, 253, 308
DpnII	GATC	4 cut(s)	196, 240, 251, 306
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
Eco130I	CCWWGG	1 cut(s)	282
Eco31I	GGTCTC	2 cut(s)	34, 75
Eco47I	GGWCC	2 cut(s)	51, 88
Eco91I	GGTNACC	1 cut(s)	320
EcoO109I	RGGNCCY	1 cut(s)	88
EcoO65I	GGTNACC	1 cut(s)	320
EcoRI	GAATTC	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	200
EcoT14I	CCWWGG	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	282
FaiI	YATR	5 cut(s)	44, 183, 279, 339, 341
FaqI	GGGAC	1 cut(s)	74
FauNDI	CATATG	1 cut(s)	339
FokI	GGATG	2 cut(s)	196, 230
GsaI	CCCAGC	2 cut(s)	68, 87
HapII	CCGG	2 cut(s)	80, 325
HinfI	GANTC	2 cut(s)	167, 206
HpaII	CCGG	2 cut(s)	80, 325
Hpy188I	TCNGA	1 cut(s)	222
Hpy188III	TCNNGA	3 cut(s)	127, 158, 263
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4V	TGCA	2 cut(s)	146, 293
KflI	GGGWCCC	1 cut(s)	88
Kzo9I	GATC	4 cut(s)	196, 240, 251, 306
LweI	GCATC	3 cut(s)	133, 280, 304
MaeIII	GTNAC	2 cut(s)	172, 320
MalI	GATC	4 cut(s)	198, 242, 253, 308
MboI	GATC	4 cut(s)	196, 240, 251, 306
MboII	GAAGA	4 cut(s)	28, 209, 280, 283
MflI	RGATCY	1 cut(s)	196
MluCI	AATT	2 cut(s)	122, 274
MlyI	GAGTC	1 cut(s)	215
MmeI	TCCRAC	2 cut(s)	78, 309
MnlI	CCTC	5 cut(s)	44, 50, 114, 220, 354
MseI	TTAA	4 cut(s)	24, 348, 356, 370
MspA1I	CMGCKG	1 cut(s)	64
MspI	CCGG	2 cut(s)	80, 325
MspR9I	CCNGG	1 cut(s)	202
MvaI	CCWGG	1 cut(s)	202
MvnI	CGCG	1 cut(s)	264
NdeI	CATATG	1 cut(s)	339
NdeII	GATC	4 cut(s)	196, 240, 251, 306
NlaIV	GGNNCC	2 cut(s)	89, 90
NmuCI	GTSAC	1 cut(s)	172
NruI	TCGCGA	1 cut(s)	264
PasI	CCCWGGG	1 cut(s)	201
PfeI	GAWTC	1 cut(s)	167
PinAI	ACCGGT	1 cut(s)	324
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
PpuMI	RGGWCCY	1 cut(s)	88
Psp5II	RGGWCCY	1 cut(s)	88
Psp6I	CCWGG	1 cut(s)	200
PspEI	GGTNACC	1 cut(s)	320
PspFI	CCCAGC	2 cut(s)	64, 83
PspGI	CCWGG	1 cut(s)	200
PspN4I	GGNNCC	2 cut(s)	89, 90
PspPI	GGNCC	2 cut(s)	51, 88
PspPPI	RGGWCCY	1 cut(s)	88
PsuI	RGATCY	1 cut(s)	196
RruI	TCGCGA	1 cut(s)	264
RsaI	GTAC	2 cut(s)	190, 231
RsaNI	GTAC	2 cut(s)	189, 230
SaqAI	TTAA	4 cut(s)	24, 348, 356, 370
Sau3AI	GATC	4 cut(s)	196, 240, 251, 306
Sau96I	GGNCC	2 cut(s)	51, 88
SchI	GAGTC	1 cut(s)	215
ScrFI	CCNGG	1 cut(s)	202
SetI	ASST	3 cut(s)	30, 231, 262
SfaNI	GCATC	3 cut(s)	133, 280, 304
SinI	GGWCC	2 cut(s)	51, 88
SmlI	CTYRAG	1 cut(s)	105
SmoI	CTYRAG	1 cut(s)	105
Sse9I	AATT	2 cut(s)	122, 274
SsiI	CCGC	1 cut(s)	62
StyD4I	CCNGG	1 cut(s)	200
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	1 cut(s)	178
TasI	AATT	2 cut(s)	122, 274
TatI	WGTACW	1 cut(s)	188
TfiI	GAWTC	1 cut(s)	167
Tru1I	TTAA	4 cut(s)	24, 348, 356, 370
Tru9I	TTAA	4 cut(s)	24, 348, 356, 370
TscAI	CASTG	1 cut(s)	177
TseFI	GTSAC	1 cut(s)	172
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	2 cut(s)	87, 326
TspRI	CASTG	1 cut(s)	177
VpaK11BI	GGWCC	2 cut(s)	51, 88
XapI	RAATTY	1 cut(s)	122
XcmI	CCANNNNNNNNNTGG	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.