Rroxscaffold_3G00232720

38.1 kDa protein-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
18428904 .. 18436989
8086 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00232720.1

Sequence Viewer

Length: 189 bp
ATGGCGATCATCCAAAGATCAAAAGCTCGTGAGAAGAAGAATTATACCAAGGCAGATGCACTTCACAAAAAGATCATTGACGCTGGATACCGGTTGGATATTCATATGCCTCTTAAAGAAATGACGAATCCCAAAGTACTTGAAATAAGCGGAATTGCGAAAATCAATGAAAATGGTGCAAAATTGTAG

Protein Analysis

62

Amino Acids

7.02

Weight (kDa)

9.85

Isoelectric Point (pI)

12.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 150
AfaI GTAC 1 cut(s) 138
AgeI ACCGGT 1 cut(s) 90
AgsI TTSAA 1 cut(s) 143
AluBI AGCT 1 cut(s) 26
AluI AGCT 1 cut(s) 26
AsiGI ACCGGT 1 cut(s) 90
BauI CACGAG 1 cut(s) 27
BciVI GTATCC 1 cut(s) 80
BfuI GTATCC 1 cut(s) 80
BmcAI AGTACT 1 cut(s) 138
BmsI GCATC 1 cut(s) 46
BsaJI CCNNGG 1 cut(s) 48
BsaWI WCCGGW 1 cut(s) 90
Bse118I RCCGGY 1 cut(s) 90
BseDI CCNNGG 1 cut(s) 48
BseGI GGATG 1 cut(s) 9
BshTI ACCGGT 1 cut(s) 90
BsiSI CCGG 1 cut(s) 91
Bsp143I GATC 3 cut(s) 6, 17, 72
BspACI CCGC 1 cut(s) 150
BsrFI RCCGGY 1 cut(s) 90
BssAI RCCGGY 1 cut(s) 90
BssECI CCNNGG 1 cut(s) 48
BssMI GATC 3 cut(s) 6, 17, 72
BssSI CACGAG 1 cut(s) 27
BssT1I CCWWGG 1 cut(s) 48
Bst2BI CACGAG 1 cut(s) 27
BstF5I GGATG 1 cut(s) 9
BstKTI GATC 3 cut(s) 9, 20, 75
BstMBI GATC 3 cut(s) 6, 17, 72
BsuI GTATCC 1 cut(s) 80
BtsCI GGATG 1 cut(s) 9
Cfr10I RCCGGY 1 cut(s) 90
CseI GACGC 1 cut(s) 89
Csp6I GTAC 1 cut(s) 137
CspAI ACCGGT 1 cut(s) 90
CviJI RGCY 1 cut(s) 26
CviKI_1 RGCY 1 cut(s) 26
CviQI GTAC 1 cut(s) 137
DpnI GATC 3 cut(s) 8, 19, 74
DpnII GATC 3 cut(s) 6, 17, 72
Eco130I CCWWGG 1 cut(s) 48
EcoT14I CCWWGG 1 cut(s) 48
ErhI CCWWGG 1 cut(s) 48
FaiI YATR 3 cut(s) 45, 105, 107
FauNDI CATATG 1 cut(s) 105
HapII CCGG 1 cut(s) 91
HgaI GACGC 1 cut(s) 89
HinfI GANTC 1 cut(s) 127
HpaII CCGG 1 cut(s) 91
Hpy188III TCNNGA 1 cut(s) 29
HpyCH4V TGCA 2 cut(s) 59, 179
Kzo9I GATC 3 cut(s) 6, 17, 72
LpnPI CCDG 2 cut(s) 69, 104
LweI GCATC 1 cut(s) 46
MalI GATC 3 cut(s) 8, 19, 74
MboI GATC 3 cut(s) 6, 17, 72
MboII GAAGA 2 cut(s) 46, 49
MluCI AATT 3 cut(s) 40, 153, 182
MmeI TCCRAC 1 cut(s) 75
MnlI CCTC 1 cut(s) 120
MseI TTAA 1 cut(s) 114
MspI CCGG 1 cut(s) 91
NdeI CATATG 1 cut(s) 105
NdeII GATC 3 cut(s) 6, 17, 72
PfeI GAWTC 1 cut(s) 127
PinAI ACCGGT 1 cut(s) 90
RsaI GTAC 1 cut(s) 138
RsaNI GTAC 1 cut(s) 137
SaqAI TTAA 1 cut(s) 114
Sau3AI GATC 3 cut(s) 6, 17, 72
ScaI AGTACT 1 cut(s) 138
SetI ASST 1 cut(s) 28
SfaNI GCATC 1 cut(s) 46
SgeI CNNG 6 cut(s) 39, 41, 61, 96, 103, 152
Sse9I AATT 3 cut(s) 40, 153, 182
SsiI CCGC 1 cut(s) 150
StyI CCWWGG 1 cut(s) 48
TasI AATT 3 cut(s) 40, 153, 182
TatI WGTACW 1 cut(s) 136
TfiI GAWTC 1 cut(s) 127
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TspDTI ATGAA 2 cut(s) 92, 183
ZrmI AGTACT 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.