Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0006546

Physical Location & Seq

Genomic Coordinates Forward (+)

30376482 .. 30378891

Gene Structure 2410 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1228600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGGGTTGTTGGGAAGCTTCATAAGGTTCCTGTTGGGGCAATGCTGCAAACCCACCACCACCGGAGGAGACTACTCTGAATCACTTGGCCTTCACGGCATCTCCGCCGCCACTGTCGGCGTTTCGGCTCTTGCCCAAGACCTCTACAACTTCGAGATCACCTCTCAGGTCCCAGAAGGGCTCGCTCAGCATGTTGTCTCGTCCAGGAAGGCTCAAGCTAACTGGTATAGAAAACTAGTTGTCGCATGGAGGGAAGCCAAACCGCCACCAAGAACACCCGAAGAAGCGGCTAGGCTTGTTATACAAACCCTGAAACAACACCAAAGGCCGGATGTTGAGGGTTTATTGGCTTTCTACGGCCTTCCTCTTCCACATACTCTGGTCGGTCTTTCTGCTGAGGCCCCAACTTCGTTGCCTCAAGGAGTAAAGTATGAGTTCCAGACGCTGCCGGTTGATGGAAAAGCGATTCAAGATGGCGATTCGTTGACAGTCTACGTCAGCACAGAGGATCCGAGGGAGTCGTCCTTTGTTCCAACCGATGTGCAAACAGCTGCCATTCAAAGATCGGAAGCTCGCGCCGTGAGGGACTATACAAAGGCAGATGCACTTCGCAAGAAAATCATTGCTGCTGGATACGGGGTACTGAATATTCAAAACGAGGAGGTCCTTGCCCGAAAGTATAGGATCCGTCTGAGGGGTATAGATGCACCTGAGGGTGAAATGCCCTATGGAGAAGAAGCCAAACAGGAGCTGGTTAAGCTTATTCAGGGCAAGCGTTTGAGGGTTCTTATCTATGGGGAAGATCGTTACGGGCGCTGTGTAGGTGACGTATACTGCAACGACGTATTTGTACAGGAAGTAATGCTCAAGAAGGGGTGTGCATGGCATTACACAGCCTACGACCAACGCCCAGAATTTGCAACATGGGAAGGAAAGGCTCGGGCGAAGCGAGTTGGGTTGTGGGCTTCATCAAACCCTGAGAAGCCATGGGACTGGAGAAGGGATCGGCGTGAAGGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004521 GO:0004536 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006308 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0019439 GO:0034641 GO:0034655 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140097 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SNase

Protein Analysis

341

Amino Acids

38.07

Weight (kDa)

8.8

Isoelectric Point (pI)

35.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNase	PF00565	228 - 322	2.7e-25	Staphylococcal nuclease homologue

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006546)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40410 AT2G40410
fragaria_vesca	FvH4_7g25420 FvH4_7g25420 FvH4_7g25420
malus_domestica	MD01G1160800.v1.1 MD07G1228600.v1.1
prunus_persica	Prupe.2G258500_v2.0.a1
pyrus_communis	pycom01g17670 pycom07g20700
rosa_chinensis	RchiOBHm_Chr1g0371391 RchiOBHm_Chr3g0455981
rosa_laevigata	RLG00000026967 RLG00000030163
rosa_multiflora	Rmu_co8299661.1_g000001 Rmu_sc0000809.1_g000026 Rmu_sc0027221.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232720 Rroxscaffold_4G00285730
rosa_rugosa	Rorug01G0363600
rosa_samantha	Rh1AG373700 Rh1BG337100 Rh1DG368100 Rh5BG126800
rosa_wichuraiana	Rw1G032870 Rw3G017510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	492, 831
AccII	CGCG	1 cut(s)	576
AciI	CCGC	4 cut(s)	105, 108, 263, 287
AclWI	GGATC	5 cut(s)	503, 516, 679, 692, 1011
AcsI	RAATTY	1 cut(s)	914
AfaI	GTAC	2 cut(s)	642, 852
AfiI	CCNNNNNNNGG	3 cut(s)	328, 455, 694
AgsI	TTSAA	3 cut(s)	470, 560, 653
AhlI	ACTAGT	1 cut(s)	235
AjnI	CCWGG	1 cut(s)	203
AluBI	AGCT	6 cut(s)	18, 218, 551, 572, 751, 760
AluI	AGCT	6 cut(s)	18, 218, 551, 572, 751, 760
Alw26I	GTCTC	2 cut(s)	63, 202
AlwI	GGATC	5 cut(s)	503, 516, 679, 692, 1011
AlwNI	CAGNNNCTG	2 cut(s)	445, 751
Ama87I	CYCGRG	1 cut(s)	939
AoxI	GGCC	4 cut(s)	88, 326, 358, 399
ApeKI	GCWGC	4 cut(s)	45, 445, 551, 626
ApoI	RAATTY	1 cut(s)	914
AspLEI	GCGC	2 cut(s)	578, 816
AspS9I	GGNCC	3 cut(s)	169, 400, 664
AsuHPI	GGTGA	3 cut(s)	151, 728, 836
AvaI	CYCGRG	1 cut(s)	939
AvaII	GGWCC	2 cut(s)	169, 664
AxyI	CCTNAGG	1 cut(s)	711
BamHI	GGATCC	2 cut(s)	508, 684
BanII	GRGCYC	1 cut(s)	183
BbvCI	CCTCAGC	1 cut(s)	396
BbvI	GCAGC	4 cut(s)	32, 432, 538, 613
BccI	CCATC	2 cut(s)	449, 467
BceAI	ACGGC	3 cut(s)	112, 373, 563
BciT130I	CCWGG	1 cut(s)	205
BciVI	GTATCC	1 cut(s)	626
BcoDI	GTCTC	2 cut(s)	63, 202
BcuI	ACTAGT	1 cut(s)	235
BfaI	CTAG	2 cut(s)	236, 291
BfoI	RGCGCY	1 cut(s)	817
BfuI	GTATCC	1 cut(s)	626
BglI	GCCNNNNNGGC	1 cut(s)	96
BisI	GCNGC	6 cut(s)	46, 108, 288, 446, 552, 627
BlpI	GCTNAGC	1 cut(s)	186
BlsI	GCNGC	6 cut(s)	47, 109, 289, 447, 553, 628
Bme1390I	CCNGG	1 cut(s)	205
Bme18I	GGWCC	2 cut(s)	169, 664
BmeT110I	CYCGRG	1 cut(s)	939
BmgT120I	GGNCC	3 cut(s)	169, 400, 664
BmiI	GGNNCC	5 cut(s)	29, 171, 402, 510, 686
BmrFI	CCNGG	1 cut(s)	205
BmsI	GCATC	3 cut(s)	108, 592, 694
BplI	GAGNNNNNCTC	2 cut(s)	146, 178
BpmI	CTGGAG	1 cut(s)	1015
Bpu10I	CCTNAGC	1 cut(s)	396
Bpu1102I	GCTNAGC	1 cut(s)	186
BpuEI	CTTGAG	3 cut(s)	198, 402, 851
BsaJI	CCNNGG	2 cut(s)	512, 986
BsaWI	WCCGGW	1 cut(s)	62
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bsc4I	CCNNNNNNNGG	3 cut(s)	328, 455, 694
Bse118I	RCCGGY	1 cut(s)	448
Bse1I	ACTGG	2 cut(s)	227, 998
Bse21I	CCTNAGG	1 cut(s)	711
Bse3DI	GCAATG	2 cut(s)	47, 621
BseBI	CCWGG	1 cut(s)	205
BseDI	CCNNGG	2 cut(s)	512, 986
BseGI	GGATG	1 cut(s)	337
BseLI	CCNNNNNNNGG	3 cut(s)	328, 455, 694
BseMI	GCAATG	2 cut(s)	47, 621
BseMII	CTCAG	6 cut(s)	179, 200, 387, 683, 702, 969
BseNI	ACTGG	2 cut(s)	227, 998
BseRI	GAGGAG	2 cut(s)	81, 674
BseXI	GCAGC	4 cut(s)	32, 432, 538, 613
Bsh1236I	CGCG	1 cut(s)	576
BshFI	GGCC	4 cut(s)	90, 328, 360, 401
BsiHKCI	CYCGRG	1 cut(s)	939
BsiSI	CCGG	3 cut(s)	63, 329, 449
BslFI	GGGAC	3 cut(s)	155, 599, 1004
BslI	CCNNNNNNNGG	3 cut(s)	328, 455, 694
BsmAI	GTCTC	2 cut(s)	63, 202
BsmFI	GGGAC	3 cut(s)	155, 599, 1004
BsnI	GGCC	4 cut(s)	90, 328, 360, 401
BsoBI	CYCGRG	1 cut(s)	939
Bsp1286I	GDGCHC	1 cut(s)	183
Bsp1407I	TGTACA	1 cut(s)	850
Bsp143I	GATC	6 cut(s)	156, 508, 563, 684, 802, 1003
Bsp1720I	GCTNAGC	1 cut(s)	186
Bsp19I	CCATGG	1 cut(s)	986
BspACI	CCGC	4 cut(s)	105, 108, 263, 287
BspANI	GGCC	4 cut(s)	90, 328, 360, 401
BspCNI	CTCAG	6 cut(s)	178, 199, 388, 684, 703, 970
BspFNI	CGCG	1 cut(s)	576
BspLI	GGNNCC	5 cut(s)	29, 171, 402, 510, 686
BspPI	GGATC	5 cut(s)	503, 516, 679, 692, 1011
BsrDI	GCAATG	2 cut(s)	47, 621
BsrFI	RCCGGY	1 cut(s)	448
BsrGI	TGTACA	1 cut(s)	850
BsrI	ACTGG	2 cut(s)	227, 998
BssAI	RCCGGY	1 cut(s)	448
BssECI	CCNNGG	2 cut(s)	512, 986
BssMI	GATC	6 cut(s)	156, 508, 563, 684, 802, 1003
BssNAI	GTATAC	1 cut(s)	832
BssT1I	CCWWGG	1 cut(s)	986
Bst1107I	GTATAC	1 cut(s)	832
Bst2UI	CCWGG	1 cut(s)	205
Bst4CI	ACNGT	2 cut(s)	115, 490
Bst6I	CTCTTC	1 cut(s)	372
BstAUI	TGTACA	1 cut(s)	850
BstC8I	GCNNGC	3 cut(s)	183, 574, 773
BstDEI	CTNAG	6 cut(s)	165, 186, 396, 692, 711, 978
BstDSI	CCRYGG	1 cut(s)	986
BstF5I	GGATG	1 cut(s)	337
BstFNI	CGCG	1 cut(s)	576
BstH2I	RGCGCY	1 cut(s)	817
BstHHI	GCGC	2 cut(s)	578, 816
BstKTI	GATC	6 cut(s)	159, 511, 566, 687, 805, 1006
BstMAI	GTCTC	2 cut(s)	63, 202
BstMBI	GATC	6 cut(s)	156, 508, 563, 684, 802, 1003
BstMWI	GCNNNNNNNGC	3 cut(s)	96, 187, 757
BstNI	CCWGG	1 cut(s)	205
BstNSI	RCATGY	1 cut(s)	194
BstSCI	CCNGG	1 cut(s)	203
BstUI	CGCG	1 cut(s)	576
BstV1I	GCAGC	4 cut(s)	32, 432, 538, 613
BstX2I	RGATCY	2 cut(s)	508, 684
BstXI	CCANNNNNNTGG	1 cut(s)	993
BstYI	RGATCY	2 cut(s)	508, 684
BstZ17I	GTATAC	1 cut(s)	832
Bsu36I	CCTNAGG	1 cut(s)	711
BsuI	GTATCC	1 cut(s)	626
BsuRI	GGCC	4 cut(s)	90, 328, 360, 401
BtgI	CCRYGG	1 cut(s)	986
BtsCI	GGATG	1 cut(s)	337
BtsIMutI	CAGTG	1 cut(s)	111
Cac8I	GCNNGC	3 cut(s)	183, 574, 773
CaiI	CAGNNNCTG	2 cut(s)	445, 751
CfoI	GCGC	2 cut(s)	578, 816
Cfr10I	RCCGGY	1 cut(s)	448
Cfr13I	GGNCC	3 cut(s)	169, 400, 664
CseI	GACGC	1 cut(s)	451
Csp6I	GTAC	2 cut(s)	641, 851
CviAII	CATG	5 cut(s)	191, 246, 882, 924, 987
CviQI	GTAC	2 cut(s)	641, 851
DdeI	CTNAG	6 cut(s)	165, 186, 396, 692, 711, 978
DpnI	GATC	6 cut(s)	158, 510, 565, 686, 804, 1005
DpnII	GATC	6 cut(s)	156, 508, 563, 684, 802, 1003
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
EciI	GGCGGA	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	986
Eco24I	GRGCYC	1 cut(s)	183
Eco47I	GGWCC	2 cut(s)	169, 664
Eco81I	CCTNAGG	1 cut(s)	711
Eco88I	CYCGRG	1 cut(s)	939
EcoO109I	RGGNCCY	3 cut(s)	169, 400, 664
EcoRII	CCWGG	1 cut(s)	203
EcoT14I	CCWWGG	1 cut(s)	986
EcoT38I	GRGCYC	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	986
FaeI	CATG	5 cut(s)	194, 249, 885, 927, 990
FaqI	GGGAC	3 cut(s)	155, 599, 1004
FatI	CATG	5 cut(s)	190, 245, 881, 923, 986
FblI	GTMKAC	2 cut(s)	492, 831
Fnu4HI	GCNGC	6 cut(s)	46, 108, 288, 446, 552, 627
FokI	GGATG	1 cut(s)	344
FriOI	GRGCYC	1 cut(s)	183
Fsp4HI	GCNGC	6 cut(s)	46, 108, 288, 446, 552, 627
FspBI	CTAG	2 cut(s)	236, 291
GlaI	GCGC	2 cut(s)	577, 815
GluI	GCNGC	6 cut(s)	46, 108, 288, 446, 552, 627
GsuI	CTGGAG	1 cut(s)	1015
HaeII	RGCGCY	1 cut(s)	817
HaeIII	GGCC	4 cut(s)	90, 328, 360, 401
HapII	CCGG	3 cut(s)	63, 329, 449
HgaI	GACGC	1 cut(s)	451
HhaI	GCGC	2 cut(s)	578, 816
Hin1II	CATG	5 cut(s)	194, 249, 885, 927, 990
Hin6I	GCGC	2 cut(s)	576, 814
HinP1I	GCGC	2 cut(s)	576, 814
HincII	GTYRAC	1 cut(s)	486
HindII	GTYRAC	1 cut(s)	486
HindIII	AAGCTT	2 cut(s)	16, 758
HinfI	GANTC	4 cut(s)	80, 466, 479, 518
HpaII	CCGG	3 cut(s)	63, 329, 449
HphI	GGTGA	3 cut(s)	151, 728, 836
Hpy166II	GTNNAC	3 cut(s)	486, 493, 832
Hpy188I	TCNGA	4 cut(s)	79, 513, 568, 693
Hpy188III	TCNNGA	4 cut(s)	154, 439, 470, 868
Hpy8I	GTNNAC	3 cut(s)	486, 493, 832
Hpy99I	CGWCG	1 cut(s)	845
HpyAV	CCTTC	8 cut(s)	101, 170, 202, 371, 865, 923, 993, 1007
HpyCH4III	ACNGT	2 cut(s)	115, 490
HpyCH4IV	ACGT	3 cut(s)	495, 828, 843
HpyCH4V	TGCA	7 cut(s)	48, 544, 605, 707, 837, 881, 920
HpyF10VI	GCNNNNNNNGC	3 cut(s)	96, 187, 757
HpyF3I	CTNAG	6 cut(s)	165, 186, 396, 692, 711, 978
HpySE526I	ACGT	3 cut(s)	495, 828, 843
Hsp92II	CATG	5 cut(s)	194, 249, 885, 927, 990
HspAI	GCGC	2 cut(s)	576, 814
Kzo9I	GATC	6 cut(s)	156, 508, 563, 684, 802, 1003
LmnI	GCTCC	1 cut(s)	748
Lsp1109I	GCAGC	4 cut(s)	32, 432, 538, 613
LweI	GCATC	3 cut(s)	108, 592, 694
MaeI	CTAG	2 cut(s)	236, 291
MaeII	ACGT	3 cut(s)	495, 828, 843
MaeIII	GTNAC	2 cut(s)	806, 824
MalI	GATC	6 cut(s)	158, 510, 565, 686, 804, 1005
MboI	GATC	6 cut(s)	156, 508, 563, 684, 802, 1003
MboII	GAAGA	4 cut(s)	293, 359, 746, 812
MflI	RGATCY	2 cut(s)	508, 684
MhlI	GDGCHC	1 cut(s)	183
MluCI	AATT	1 cut(s)	914
MlyI	GAGTC	1 cut(s)	527
MmeI	TCCRAC	1 cut(s)	557
MseI	TTAA	1 cut(s)	756
MspA1I	CMGCKG	1 cut(s)	551
MspI	CCGG	3 cut(s)	63, 329, 449
MspR9I	CCNGG	1 cut(s)	205
MvaI	CCWGG	1 cut(s)	205
MvnI	CGCG	1 cut(s)	576
MwoI	GCNNNNNNNGC	3 cut(s)	96, 187, 757
NcoI	CCATGG	1 cut(s)	986
NdeII	GATC	6 cut(s)	156, 508, 563, 684, 802, 1003
NlaIII	CATG	5 cut(s)	194, 249, 885, 927, 990
NlaIV	GGNNCC	5 cut(s)	29, 171, 402, 510, 686
NmuCI	GTSAC	1 cut(s)	824
NspI	RCATGY	1 cut(s)	194
PcsI	WCGNNNNNNNCGW	1 cut(s)	946
PfeI	GAWTC	3 cut(s)	80, 466, 479
PfoI	TCCNGGA	1 cut(s)	203
PkrI	GCNGC	6 cut(s)	47, 109, 289, 447, 553, 628
PleI	GAGTC	1 cut(s)	526
PpsI	GAGTC	1 cut(s)	526
PpuMI	RGGWCCY	2 cut(s)	169, 664
Psp5II	RGGWCCY	2 cut(s)	169, 664
Psp6I	CCWGG	1 cut(s)	203
PspGI	CCWGG	1 cut(s)	203
PspN4I	GGNNCC	5 cut(s)	29, 171, 402, 510, 686
PspPI	GGNCC	3 cut(s)	169, 400, 664
PspPPI	RGGWCCY	2 cut(s)	169, 664
PstNI	CAGNNNCTG	2 cut(s)	445, 751
PsuI	RGATCY	2 cut(s)	508, 684
PvuII	CAGCTG	1 cut(s)	551
RsaI	GTAC	2 cut(s)	642, 852
RsaNI	GTAC	2 cut(s)	641, 851
SaqAI	TTAA	1 cut(s)	756
SatI	GCNGC	6 cut(s)	46, 108, 288, 446, 552, 627
Sau3AI	GATC	6 cut(s)	156, 508, 563, 684, 802, 1003
Sau96I	GGNCC	3 cut(s)	169, 400, 664
SchI	GAGTC	1 cut(s)	527
ScrFI	CCNGG	1 cut(s)	205
SduI	GDGCHC	1 cut(s)	183
SfaNI	GCATC	3 cut(s)	108, 592, 694
SinI	GGWCC	2 cut(s)	169, 664
SmlI	CTYRAG	3 cut(s)	213, 417, 866
SmoI	CTYRAG	3 cut(s)	213, 417, 866
SpeI	ACTAGT	1 cut(s)	235
Sse9I	AATT	1 cut(s)	914
SsiI	CCGC	4 cut(s)	105, 108, 263, 287
SspI	AATATT	1 cut(s)	649
SspMI	CTAG	2 cut(s)	236, 291
StyD4I	CCNGG	1 cut(s)	203
StyI	CCWWGG	1 cut(s)	986
TaaI	ACNGT	2 cut(s)	115, 490
TaiI	ACGT	3 cut(s)	498, 831, 846
TaqI	TCGA	1 cut(s)	153
TaqII	GACCGA	1 cut(s)	374
TasI	AATT	1 cut(s)	914
TatI	WGTACW	1 cut(s)	850
TauI	GCSGC	2 cut(s)	110, 290
TfiI	GAWTC	3 cut(s)	80, 466, 479
Tru1I	TTAA	1 cut(s)	756
Tru9I	TTAA	1 cut(s)	756
TscAI	CASTG	1 cut(s)	118
TseFI	GTSAC	1 cut(s)	824
TseI	GCWGC	4 cut(s)	45, 445, 551, 626
Tsp45I	GTSAC	1 cut(s)	824
TspDTI	ATGAA	2 cut(s)	10, 957
TspGWI	ACGGA	1 cut(s)	677
TspRI	CASTG	1 cut(s)	118
VpaK11BI	GGWCC	2 cut(s)	169, 664
XapI	RAATTY	1 cut(s)	914
XceI	RCATGY	1 cut(s)	194
XcmI	CCANNNNNNNNNTGG	1 cut(s)	748
XmiI	GTMKAC	2 cut(s)	492, 831
XspI	CTAG	2 cut(s)	236, 291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.