Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0006546

Physical Location & Seq

Genomic Coordinates Forward (+)

16861843 .. 16863967

Gene Structure 2125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g17670.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGGGTTGTTGGGAAGCTTCATAAGGTTCCTTTTTGGCCAATGCTGCAAACCCACCACCACCGGCGGGGACTACTCTGATCCACTTGGCCATCACGGCGTCCCCGCCACCACTGTCGGCGTTTCGGCTCTTGCCCAAGACCTCTACAACTTCGAGATCACCTCTCAGGTCCCAGAAGGGCTCGGTCAGCATGTTGTCTCGTCCAGGAAAGCTCAAGCTAACTGGTATAGAAAACTAGTTGTGACATGGAGGGAAGCAAAACCGCCACCAAGAACACCCGAAGAAGCGGCTAGTCTTGTCATACAAACCCTGAAAGGACATCGAAAGGCGGATGTTGAGGGTGTGTTGGCTTTCTATGGCCTCAATATTTCCGCTGAGGATCCAACATCATTGCCTAAAGGAGTAAAGTTTGAGTTCCAGACGCTACCGGTTGATGAAAAAGCGATTGCAGATGGCGATACAGTGACGGTCTATGTCAGCACAGAGGATCCCAGGGAGTCATCCTGTGTTCCGAGCGATGTGCAAACAGCTGCCATTGAAAGATCAGAAGCACGCGCCGTGAGGAACTATACAAGGGCAGATGCACTTCACCAGAAGATCATTGATGCTGGATACCGGGTACTGAACATTGAAAACGAGGAGGTCCTTGCCCGAAAGTATAGGATTCGACTGAGGGGTATAGATGCGCCGGAGAGTTCAATGCCCTACGGAAAAGAAGCCAAACAGGAGCTGGTTAAGCTTATTCAGGGCAAGTGCTTGAGGGTTCTTATCTACGGGGAAGATCGTTACGGACGCTGTGTAGGCGACATATACAGCAATGGCACATTTGTACAGGAAGTAATGCTCAAGAACGGGTGTGCATGGCATTACGCAGCCTACGACAAACGCCCAGAATTCGCAAGGTGGGAAGAACAGGCTCGGACGCAGCGAGTTGGGTTGTGGGCTTCATCAAACCCTGAGAAGCCATGGGATTGGAGAAGGGATAAGCGTCAAGGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004521 GO:0004536 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006308 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0019439 GO:0034641 GO:0034655 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140097 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SNase

Protein Analysis

334

Amino Acids

37.38

Weight (kDa)

8.4

Isoelectric Point (pI)

39.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006546)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40410 AT2G40410
fragaria_vesca	FvH4_7g25420 FvH4_7g25420 FvH4_7g25420
malus_domestica	MD01G1160800.v1.1 MD07G1228600.v1.1
prunus_persica	Prupe.2G258500_v2.0.a1
pyrus_communis	pycom01g17670 pycom07g20700
rosa_chinensis	RchiOBHm_Chr1g0371391 RchiOBHm_Chr3g0455981
rosa_laevigata	RLG00000026967 RLG00000030163
rosa_multiflora	Rmu_co8299661.1_g000001 Rmu_sc0000809.1_g000026 Rmu_sc0027221.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232720 Rroxscaffold_4G00285730
rosa_rugosa	Rorug01G0363600
rosa_samantha	Rh1AG373700 Rh1BG337100 Rh1DG368100 Rh5BG126800
rosa_wichuraiana	Rw1G032870 Rw3G017510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	555
AciI	CCGC	6 cut(s)	66, 105, 263, 287, 329, 372
AclWI	GGATC	5 cut(s)	74, 374, 387, 482, 495
AcoI	YGGCCR	2 cut(s)	37, 88
AcsI	RAATTY	1 cut(s)	893
AcyI	GRCGYC	1 cut(s)	99
AfaI	GTAC	2 cut(s)	621, 831
AfiI	CCNNNNNNNGG	1 cut(s)	66
AgeI	ACCGGT	1 cut(s)	427
AgsI	TTSAA	3 cut(s)	539, 632, 699
AhlI	ACTAGT	1 cut(s)	235
AjnI	CCWGG	2 cut(s)	203, 491
AluBI	AGCT	6 cut(s)	18, 212, 218, 530, 730, 739
AluI	AGCT	6 cut(s)	18, 212, 218, 530, 730, 739
Alw26I	GTCTC	1 cut(s)	202
AlwI	GGATC	5 cut(s)	74, 374, 387, 482, 495
AlwNI	CAGNNNCTG	1 cut(s)	730
AoxI	GGCC	3 cut(s)	37, 88, 358
ApeKI	GCWGC	4 cut(s)	45, 530, 872, 925
ApoI	RAATTY	1 cut(s)	893
AsiGI	ACCGGT	1 cut(s)	427
AspLEI	GCGC	2 cut(s)	557, 688
AspS9I	GGNCC	2 cut(s)	169, 643
AsuC2I	CCSGG	1 cut(s)	617
AsuHPI	GGTGA	2 cut(s)	151, 581
AvaII	GGWCC	2 cut(s)	169, 643
BalI	TGGCCA	2 cut(s)	39, 90
BamHI	GGATCC	2 cut(s)	379, 487
BanII	GRGCYC	1 cut(s)	183
BbvCI	CCTCAGC	1 cut(s)	375
BbvI	GCAGC	4 cut(s)	32, 517, 884, 937
BccI	CCATC	2 cut(s)	99, 446
BceAI	ACGGC	2 cut(s)	112, 542
BcgI	CGANNNNNNTGC	2 cut(s)	502, 536
BciT130I	CCWGG	2 cut(s)	205, 493
BciVI	GTATCC	1 cut(s)	605
BcnI	CCSGG	1 cut(s)	617
BcoDI	GTCTC	1 cut(s)	202
BcuI	ACTAGT	1 cut(s)	235
BfaI	CTAG	2 cut(s)	236, 291
BfuI	GTATCC	1 cut(s)	605
BglI	GCCNNNNNGGC	1 cut(s)	96
BisI	GCNGC	5 cut(s)	46, 288, 531, 873, 926
BlsI	GCNGC	5 cut(s)	47, 289, 532, 874, 927
Bme1390I	CCNGG	3 cut(s)	205, 493, 617
Bme18I	GGWCC	2 cut(s)	169, 643
BmgT120I	GGNCC	2 cut(s)	169, 643
BmiI	GGNNCC	4 cut(s)	29, 171, 381, 489
BmrFI	CCNGG	3 cut(s)	205, 493, 617
BmsI	GCATC	3 cut(s)	571, 595, 673
BplI	GAGNNNNNCTC	2 cut(s)	146, 178
Bpu10I	CCTNAGC	1 cut(s)	375
BpuEI	CTTGAG	3 cut(s)	198, 778, 830
BpuMI	CCSGG	1 cut(s)	617
BsaHI	GRCGYC	1 cut(s)	99
BsaJI	CCNNGG	3 cut(s)	491, 492, 965
BsaWI	WCCGGW	1 cut(s)	427
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
Bse118I	RCCGGY	2 cut(s)	62, 427
Bse1I	ACTGG	1 cut(s)	227
Bse3DI	GCAATG	2 cut(s)	389, 823
BseBI	CCWGG	2 cut(s)	205, 493
BseDI	CCNNGG	3 cut(s)	491, 492, 965
BseGI	GGATG	2 cut(s)	337, 500
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseMI	GCAATG	2 cut(s)	389, 823
BseMII	CTCAG	4 cut(s)	179, 366, 662, 948
BseNI	ACTGG	1 cut(s)	227
BseRI	GAGGAG	1 cut(s)	653
BseXI	GCAGC	4 cut(s)	32, 517, 884, 937
Bsh1236I	CGCG	1 cut(s)	555
BshFI	GGCC	3 cut(s)	39, 90, 360
BshTI	ACCGGT	1 cut(s)	427
BsiSI	CCGG	4 cut(s)	63, 428, 616, 689
BslFI	GGGAC	3 cut(s)	83, 86, 155
BslI	CCNNNNNNNGG	1 cut(s)	66
BsmAI	GTCTC	1 cut(s)	202
BsmFI	GGGAC	3 cut(s)	83, 86, 155
BsnI	GGCC	3 cut(s)	39, 90, 360
Bsp1286I	GDGCHC	1 cut(s)	183
Bsp1407I	TGTACA	1 cut(s)	829
Bsp143I	GATC	7 cut(s)	79, 156, 379, 487, 542, 597, 781
Bsp19I	CCATGG	1 cut(s)	965
BspACI	CCGC	6 cut(s)	66, 105, 263, 287, 329, 372
BspANI	GGCC	3 cut(s)	39, 90, 360
BspCNI	CTCAG	4 cut(s)	178, 367, 663, 949
BspFNI	CGCG	1 cut(s)	555
BspLI	GGNNCC	4 cut(s)	29, 171, 381, 489
BspPI	GGATC	5 cut(s)	74, 374, 387, 482, 495
BsrDI	GCAATG	2 cut(s)	389, 823
BsrFI	RCCGGY	2 cut(s)	62, 427
BsrGI	TGTACA	1 cut(s)	829
BsrI	ACTGG	1 cut(s)	227
BssAI	RCCGGY	2 cut(s)	62, 427
BssECI	CCNNGG	3 cut(s)	491, 492, 965
BssMI	GATC	7 cut(s)	79, 156, 379, 487, 542, 597, 781
BssNI	GRCGYC	1 cut(s)	99
BssT1I	CCWWGG	1 cut(s)	965
Bst2UI	CCWGG	2 cut(s)	205, 493
Bst4CI	ACNGT	3 cut(s)	115, 463, 469
BstACI	GRCGYC	1 cut(s)	99
BstAUI	TGTACA	1 cut(s)	829
BstC8I	GCNNGC	1 cut(s)	553
BstDEI	CTNAG	4 cut(s)	165, 375, 671, 957
BstDSI	CCRYGG	1 cut(s)	965
BstF5I	GGATG	2 cut(s)	337, 500
BstFNI	CGCG	1 cut(s)	555
BstHHI	GCGC	2 cut(s)	557, 688
BstKTI	GATC	7 cut(s)	82, 159, 382, 490, 545, 600, 784
BstMAI	GTCTC	1 cut(s)	202
BstMBI	GATC	7 cut(s)	79, 156, 379, 487, 542, 597, 781
BstMWI	GCNNNNNNNGC	5 cut(s)	45, 96, 187, 736, 801
BstNI	CCWGG	2 cut(s)	205, 493
BstNSI	RCATGY	1 cut(s)	194
BstSCI	CCNGG	3 cut(s)	203, 491, 615
BstUI	CGCG	1 cut(s)	555
BstV1I	GCAGC	4 cut(s)	32, 517, 884, 937
BstX2I	RGATCY	2 cut(s)	379, 487
BstXI	CCANNNNNNTGG	1 cut(s)	972
BstYI	RGATCY	2 cut(s)	379, 487
BsuI	GTATCC	1 cut(s)	605
BsuRI	GGCC	3 cut(s)	39, 90, 360
BtgI	CCRYGG	1 cut(s)	965
BtgZI	GCGATG	1 cut(s)	531
BtsCI	GGATG	2 cut(s)	337, 500
BtsIMutI	CAGTG	2 cut(s)	111, 468
Cac8I	GCNNGC	1 cut(s)	553
CaiI	CAGNNNCTG	1 cut(s)	730
CfoI	GCGC	2 cut(s)	557, 688
Cfr10I	RCCGGY	2 cut(s)	62, 427
Cfr13I	GGNCC	2 cut(s)	169, 643
CseI	GACGC	5 cut(s)	88, 430, 801, 931, 977
Csp6I	GTAC	2 cut(s)	620, 830
CspAI	ACCGGT	1 cut(s)	427
CviAII	CATG	4 cut(s)	191, 246, 861, 966
CviQI	GTAC	2 cut(s)	620, 830
DdeI	CTNAG	4 cut(s)	165, 375, 671, 957
DpnI	GATC	7 cut(s)	81, 158, 381, 489, 544, 599, 783
DpnII	GATC	7 cut(s)	79, 156, 379, 487, 542, 597, 781
EaeI	YGGCCR	2 cut(s)	37, 88
EciI	GGCGGA	1 cut(s)	344
Eco130I	CCWWGG	1 cut(s)	965
Eco24I	GRGCYC	1 cut(s)	183
Eco47I	GGWCC	2 cut(s)	169, 643
EcoO109I	RGGNCCY	2 cut(s)	169, 643
EcoRI	GAATTC	1 cut(s)	893
EcoRII	CCWGG	2 cut(s)	203, 491
EcoT14I	CCWWGG	1 cut(s)	965
EcoT38I	GRGCYC	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	965
FaeI	CATG	4 cut(s)	194, 249, 864, 969
FaqI	GGGAC	3 cut(s)	83, 86, 155
FatI	CATG	4 cut(s)	190, 245, 860, 965
FauI	CCCGC	2 cut(s)	59, 112
Fnu4HI	GCNGC	5 cut(s)	46, 288, 531, 873, 926
FokI	GGATG	2 cut(s)	344, 487
FriOI	GRGCYC	1 cut(s)	183
Fsp4HI	GCNGC	5 cut(s)	46, 288, 531, 873, 926
FspBI	CTAG	2 cut(s)	236, 291
GlaI	GCGC	2 cut(s)	556, 687
GluI	GCNGC	5 cut(s)	46, 288, 531, 873, 926
HaeIII	GGCC	3 cut(s)	39, 90, 360
HapII	CCGG	4 cut(s)	63, 428, 616, 689
HgaI	GACGC	5 cut(s)	88, 430, 801, 931, 977
HhaI	GCGC	2 cut(s)	557, 688
Hin1I	GRCGYC	1 cut(s)	99
Hin1II	CATG	4 cut(s)	194, 249, 864, 969
Hin6I	GCGC	2 cut(s)	555, 686
HinP1I	GCGC	2 cut(s)	555, 686
HindIII	AAGCTT	2 cut(s)	16, 737
HinfI	GANTC	2 cut(s)	497, 664
HpaII	CCGG	4 cut(s)	63, 428, 616, 689
HphI	GGTGA	2 cut(s)	151, 581
Hpy188I	TCNGA	4 cut(s)	79, 513, 547, 921
Hpy188III	TCNNGA	3 cut(s)	154, 418, 847
HpyAV	CCTTC	2 cut(s)	170, 972
HpyCH4III	ACNGT	3 cut(s)	115, 463, 469
HpyCH4V	TGCA	5 cut(s)	48, 449, 523, 584, 860
HpyF10VI	GCNNNNNNNGC	5 cut(s)	45, 96, 187, 736, 801
HpyF3I	CTNAG	4 cut(s)	165, 375, 671, 957
Hsp92I	GRCGYC	1 cut(s)	99
Hsp92II	CATG	4 cut(s)	194, 249, 864, 969
HspAI	GCGC	2 cut(s)	555, 686
Kzo9I	GATC	7 cut(s)	79, 156, 379, 487, 542, 597, 781
LmnI	GCTCC	1 cut(s)	727
Lsp1109I	GCAGC	4 cut(s)	32, 517, 884, 937
LweI	GCATC	3 cut(s)	571, 595, 673
MaeI	CTAG	2 cut(s)	236, 291
MaeIII	GTNAC	3 cut(s)	241, 463, 785
MalI	GATC	7 cut(s)	81, 158, 381, 489, 544, 599, 783
MboI	GATC	7 cut(s)	79, 156, 379, 487, 542, 597, 781
MboII	GAAGA	4 cut(s)	293, 607, 791, 920
MflI	RGATCY	2 cut(s)	379, 487
MhlI	GDGCHC	1 cut(s)	183
MlsI	TGGCCA	2 cut(s)	39, 90
MluCI	AATT	1 cut(s)	893
MluNI	TGGCCA	2 cut(s)	39, 90
MlyI	GAGTC	1 cut(s)	506
MmeI	TCCRAC	1 cut(s)	407
Mox20I	TGGCCA	2 cut(s)	39, 90
MscI	TGGCCA	2 cut(s)	39, 90
MseI	TTAA	1 cut(s)	735
Msp20I	TGGCCA	2 cut(s)	39, 90
MspA1I	CMGCKG	2 cut(s)	374, 530
MspI	CCGG	4 cut(s)	63, 428, 616, 689
MspR9I	CCNGG	3 cut(s)	205, 493, 617
MvaI	CCWGG	2 cut(s)	205, 493
MvnI	CGCG	1 cut(s)	555
MwoI	GCNNNNNNNGC	5 cut(s)	45, 96, 187, 736, 801
NciI	CCSGG	1 cut(s)	617
NcoI	CCATGG	1 cut(s)	965
NdeII	GATC	7 cut(s)	79, 156, 379, 487, 542, 597, 781
NlaIII	CATG	4 cut(s)	194, 249, 864, 969
NlaIV	GGNNCC	4 cut(s)	29, 171, 381, 489
NmuCI	GTSAC	2 cut(s)	241, 463
NspI	RCATGY	1 cut(s)	194
PasI	CCCWGGG	1 cut(s)	492
PcsI	WCGNNNNNNNCGW	2 cut(s)	876, 925
PfeI	GAWTC	1 cut(s)	664
PfoI	TCCNGGA	1 cut(s)	203
PinAI	ACCGGT	1 cut(s)	427
PkrI	GCNGC	5 cut(s)	47, 289, 532, 874, 927
PleI	GAGTC	1 cut(s)	505
PpsI	GAGTC	1 cut(s)	505
PpuMI	RGGWCCY	2 cut(s)	169, 643
Psp5II	RGGWCCY	2 cut(s)	169, 643
Psp6I	CCWGG	2 cut(s)	203, 491
PspGI	CCWGG	2 cut(s)	203, 491
PspN4I	GGNNCC	4 cut(s)	29, 171, 381, 489
PspPI	GGNCC	2 cut(s)	169, 643
PspPPI	RGGWCCY	2 cut(s)	169, 643
PstNI	CAGNNNCTG	1 cut(s)	730
PsuI	RGATCY	2 cut(s)	379, 487
PvuII	CAGCTG	1 cut(s)	530
RsaI	GTAC	2 cut(s)	621, 831
RsaNI	GTAC	2 cut(s)	620, 830
SaqAI	TTAA	1 cut(s)	735
SatI	GCNGC	5 cut(s)	46, 288, 531, 873, 926
Sau3AI	GATC	7 cut(s)	79, 156, 379, 487, 542, 597, 781
Sau96I	GGNCC	2 cut(s)	169, 643
SchI	GAGTC	1 cut(s)	506
ScrFI	CCNGG	3 cut(s)	205, 493, 617
SduI	GDGCHC	1 cut(s)	183
SfaNI	GCATC	3 cut(s)	571, 595, 673
SgrAI	CRCCGGYG	1 cut(s)	62
SinI	GGWCC	2 cut(s)	169, 643
SmlI	CTYRAG	3 cut(s)	213, 757, 845
SmoI	CTYRAG	3 cut(s)	213, 757, 845
SpeI	ACTAGT	1 cut(s)	235
Sse9I	AATT	1 cut(s)	893
SsiI	CCGC	6 cut(s)	66, 105, 263, 287, 329, 372
SspI	AATATT	1 cut(s)	367
SspMI	CTAG	2 cut(s)	236, 291
StyD4I	CCNGG	3 cut(s)	203, 491, 615
StyI	CCWWGG	1 cut(s)	965
TaaI	ACNGT	3 cut(s)	115, 463, 469
TaqI	TCGA	3 cut(s)	153, 322, 667
TaqII	GACCGA	1 cut(s)	173
TasI	AATT	1 cut(s)	893
TatI	WGTACW	1 cut(s)	829
TauI	GCSGC	1 cut(s)	290
TfiI	GAWTC	1 cut(s)	664
Tru1I	TTAA	1 cut(s)	735
Tru9I	TTAA	1 cut(s)	735
TscAI	CASTG	2 cut(s)	118, 468
TseFI	GTSAC	2 cut(s)	241, 463
TseI	GCWGC	4 cut(s)	45, 530, 872, 925
Tsp45I	GTSAC	2 cut(s)	241, 463
TspDTI	ATGAA	3 cut(s)	10, 450, 936
TspGWI	ACGGA	2 cut(s)	723, 804
TspRI	CASTG	2 cut(s)	118, 468
VpaK11BI	GGWCC	2 cut(s)	169, 643
XapI	RAATTY	1 cut(s)	893
XceI	RCATGY	1 cut(s)	194
XcmI	CCANNNNNNNNNTGG	1 cut(s)	727
XspI	CTAG	2 cut(s)	236, 291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.