Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006546

Physical Location & Seq

Genomic Coordinates Reverse (-)

47875189 .. 47876506

Gene Structure 1318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0363600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGCGCTCCGCTCATCCCCAAAACGGCGGTGAAACCCCCTACCAAATCCCCACGCACCCTAACTTCCAGTCCACCGTCTCCCTCCGCAAGCTCCGCCGCTTCAACTACCTCATCCTCATCTTCCGCATCGCCGCCTTCAGCTCCTCCCTCGCCTCCTTCGTCTTCATGCTCACCACCTCCCGCGACTCCGACCCCTCCTCCCCTCGCTGGTACCACTTCGACGCCTTCAGTGGTGGGAGCGAATGCGATAGTGGCGATATACTCGCTCTTCGAAATGGTGGCGTCGGTTTGGGAGATTTCCAGAGGCTCAACTCTGTTCAGCGAGGTGTTGCAGGTCTGGTTCGACTTCAGCCACGACCAGGTGTTCGCGTACCTGCTGCTGTCTGCGGACTCGGCGGGAACGGCGCTGGCGAGGGTTTTGAAAGGGATGGACACGTGTACGGCGTGGAGCGCGTTCTGCATAGAGACGGACATATCGATCGCGTTGGGGTTTGTCGGGTTTTTGTTCCTGGGCTTTTCGTCCGTGCTCTCGGGCTTTCGGGTCGCCTGCTTCGTAATCAAGGGTTCTCGTTTTCATCTTTAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAATATTTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004521 GO:0004536 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006308 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0019439 GO:0034641 GO:0034655 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140097 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SNase

Protein Analysis

207

Amino Acids

22.77

Weight (kDa)

10.13

Isoelectric Point (pI)

42.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006546)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40410 AT2G40410
fragaria_vesca	FvH4_7g25420 FvH4_7g25420 FvH4_7g25420
malus_domestica	MD01G1160800.v1.1 MD07G1228600.v1.1
prunus_persica	Prupe.2G258500_v2.0.a1
pyrus_communis	pycom01g17670 pycom07g20700
rosa_chinensis	RchiOBHm_Chr1g0371391 RchiOBHm_Chr3g0455981
rosa_laevigata	RLG00000026967 RLG00000030163
rosa_multiflora	Rmu_co8299661.1_g000001 Rmu_sc0000809.1_g000026 Rmu_sc0027221.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232720 Rroxscaffold_4G00285730
rosa_rugosa	Rorug01G0363600
rosa_samantha	Rh1AG373700 Rh1BG337100 Rh1DG368100 Rh5BG126800
rosa_wichuraiana	Rw1G032870 Rw3G017510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	323, 382
Acc65I	GGTACC	1 cut(s)	210
AccB1I	GGYRCC	1 cut(s)	210
AccBSI	CCGCTC	1 cut(s)	11
AccII	CGCG	4 cut(s)	183, 369, 453, 483
AcuI	CTGAAG	3 cut(s)	121, 211, 332
AcvI	CACGTG	1 cut(s)	436
AcyI	GRCGYC	2 cut(s)	222, 282
AfaI	GTAC	3 cut(s)	212, 372, 440
AfiI	CCNNNNNNNGG	3 cut(s)	23, 207, 359
AflIII	ACRYGT	2 cut(s)	433, 435
AgsI	TTSAA	2 cut(s)	103, 422
AjnI	CCWGG	2 cut(s)	358, 508
AluBI	AGCT	2 cut(s)	91, 141
AluI	AGCT	2 cut(s)	91, 141
Alw21I	GWGCWC	1 cut(s)	529
Alw26I	GTCTC	2 cut(s)	82, 459
Ama87I	CYCGRG	1 cut(s)	530
ApeKI	GCWGC	1 cut(s)	377
ArsI	GACNNNNNNTTYG	2 cut(s)	348, 380
Asp718I	GGTACC	1 cut(s)	210
AspLEI	GCGC	3 cut(s)	6, 407, 453
AsuHPI	GGTGA	2 cut(s)	41, 163
AsuII	TTCGAA	1 cut(s)	271
AvaI	CYCGRG	1 cut(s)	530
BanI	GGYRCC	1 cut(s)	210
BbrPI	CACGTG	1 cut(s)	436
BbsI	GAAGAC	1 cut(s)	154
Bbv12I	GWGCWC	1 cut(s)	529
BbvI	GCAGC	1 cut(s)	364
BccI	CCATC	1 cut(s)	422
BceAI	ACGGC	3 cut(s)	40, 418, 457
BciT130I	CCWGG	2 cut(s)	360, 510
BcoDI	GTCTC	2 cut(s)	82, 459
BfoI	RGCGCY	1 cut(s)	408
BfuAI	ACCTGC	2 cut(s)	323, 382
BisI	GCNGC	3 cut(s)	97, 132, 378
BlsI	GCNGC	3 cut(s)	98, 133, 379
Bme1390I	CCNGG	2 cut(s)	360, 510
BmeT110I	CYCGRG	1 cut(s)	530
BmiI	GGNNCC	1 cut(s)	212
BmrFI	CCNGG	2 cut(s)	360, 510
BmsI	GCATC	1 cut(s)	135
BpiI	GAAGAC	1 cut(s)	154
Bpu14I	TTCGAA	1 cut(s)	271
Bsa29I	ATCGAT	1 cut(s)	477
BsaAI	YACGTR	1 cut(s)	436
BsaHI	GRCGYC	2 cut(s)	222, 282
BsaJI	CCNNGG	1 cut(s)	509
BsaXI	ACNNNNNCTCC	2 cut(s)	182, 212
Bsc4I	CCNNNNNNNGG	3 cut(s)	23, 207, 359
Bse1I	ACTGG	1 cut(s)	67
BseBI	CCWGG	2 cut(s)	360, 510
BseCI	ATCGAT	1 cut(s)	477
BseDI	CCNNGG	1 cut(s)	509
BseGI	GGATG	3 cut(s)	13, 111, 433
BseLI	CCNNNNNNNGG	3 cut(s)	23, 207, 359
BseNI	ACTGG	1 cut(s)	67
BseRI	GAGGAG	2 cut(s)	133, 187
BseXI	GCAGC	1 cut(s)	364
Bsh1236I	CGCG	4 cut(s)	183, 369, 453, 483
Bsh1285I	CGRYCG	1 cut(s)	481
BshNI	GGYRCC	1 cut(s)	210
BshVI	ATCGAT	1 cut(s)	477
BsiEI	CGRYCG	1 cut(s)	481
BsiHKAI	GWGCWC	1 cut(s)	529
BsiHKCI	CYCGRG	1 cut(s)	530
BslI	CCNNNNNNNGG	3 cut(s)	23, 207, 359
BsmAI	GTCTC	2 cut(s)	82, 459
BsmBI	CGTCTC	2 cut(s)	82, 459
BsmI	GAATGC	1 cut(s)	248
BsoBI	CYCGRG	1 cut(s)	530
Bsp119I	TTCGAA	1 cut(s)	271
Bsp1286I	GDGCHC	1 cut(s)	529
Bsp143I	GATC	1 cut(s)	478
BspDI	ATCGAT	1 cut(s)	477
BspFNI	CGCG	4 cut(s)	183, 369, 453, 483
BspLI	GGNNCC	1 cut(s)	212
BspMI	ACCTGC	2 cut(s)	323, 382
BspQI	GCTCTTC	1 cut(s)	273
BspT104I	TTCGAA	1 cut(s)	271
BspT107I	GGYRCC	1 cut(s)	210
BsrBI	CCGCTC	1 cut(s)	11
BsrI	ACTGG	1 cut(s)	67
BssECI	CCNNGG	1 cut(s)	509
BssMI	GATC	1 cut(s)	478
BssNI	GRCGYC	2 cut(s)	222, 282
Bst2UI	CCWGG	2 cut(s)	360, 510
Bst4CI	ACNGT	1 cut(s)	76
Bst6I	CTCTTC	1 cut(s)	273
BstACI	GRCGYC	2 cut(s)	222, 282
BstBAI	YACGTR	1 cut(s)	436
BstBI	TTCGAA	1 cut(s)	271
BstC8I	GCNNGC	3 cut(s)	89, 409, 548
BstF5I	GGATG	3 cut(s)	13, 111, 433
BstFNI	CGCG	4 cut(s)	183, 369, 453, 483
BstH2I	RGCGCY	1 cut(s)	408
BstHHI	GCGC	3 cut(s)	6, 407, 453
BstKTI	GATC	1 cut(s)	481
BstMAI	GTCTC	2 cut(s)	82, 459
BstMBI	GATC	1 cut(s)	478
BstMCI	CGRYCG	1 cut(s)	481
BstMWI	GCNNNNNNNGC	6 cut(s)	93, 252, 393, 402, 450, 457
BstNI	CCWGG	2 cut(s)	360, 510
BstSCI	CCNGG	2 cut(s)	358, 508
BstUI	CGCG	4 cut(s)	183, 369, 453, 483
BstV1I	GCAGC	1 cut(s)	364
BstV2I	GAAGAC	1 cut(s)	154
Bsu15I	ATCGAT	1 cut(s)	477
BsuTUI	ATCGAT	1 cut(s)	477
BtgZI	GCGATG	1 cut(s)	112
BtsCI	GGATG	3 cut(s)	13, 111, 433
BtsIMutI	CAGTG	1 cut(s)	235
BveI	ACCTGC	2 cut(s)	323, 382
Cac8I	GCNNGC	3 cut(s)	89, 409, 548
CfoI	GCGC	3 cut(s)	6, 407, 453
ClaI	ATCGAT	1 cut(s)	477
CseI	GACGC	2 cut(s)	230, 271
CsiI	ACCWGGT	1 cut(s)	358
Csp6I	GTAC	3 cut(s)	211, 371, 439
CviAII	CATG	1 cut(s)	166
CviJI	RGCY	6 cut(s)	91, 141, 307, 352, 514, 535
CviKI_1	RGCY	6 cut(s)	91, 141, 307, 352, 514, 535
CviQI	GTAC	3 cut(s)	211, 371, 439
DpnI	GATC	1 cut(s)	480
DpnII	GATC	1 cut(s)	478
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
EciI	GGCGGA	1 cut(s)	83
Eco57I	CTGAAG	3 cut(s)	121, 211, 332
Eco72I	CACGTG	1 cut(s)	436
Eco88I	CYCGRG	1 cut(s)	530
EcoRII	CCWGG	2 cut(s)	358, 508
Esp3I	CGTCTC	2 cut(s)	82, 459
FaeI	CATG	1 cut(s)	169
FaiI	YATR	4 cut(s)	167, 260, 462, 474
FatI	CATG	1 cut(s)	165
FauI	CCCGC	2 cut(s)	188, 389
Fnu4HI	GCNGC	3 cut(s)	97, 132, 378
FokI	GGATG	2 cut(s)	98, 440
Fsp4HI	GCNGC	3 cut(s)	97, 132, 378
GlaI	GCGC	3 cut(s)	5, 406, 452
GluI	GCNGC	3 cut(s)	97, 132, 378
HaeII	RGCGCY	1 cut(s)	408
HgaI	GACGC	2 cut(s)	230, 271
HhaI	GCGC	3 cut(s)	6, 407, 453
Hin1I	GRCGYC	2 cut(s)	222, 282
Hin1II	CATG	1 cut(s)	169
Hin6I	GCGC	3 cut(s)	4, 405, 451
HinP1I	GCGC	3 cut(s)	4, 405, 451
HinfI	GANTC	2 cut(s)	185, 390
HphI	GGTGA	2 cut(s)	41, 163
Hpy166II	GTNNAC	2 cut(s)	72, 439
Hpy188I	TCNGA	1 cut(s)	190
Hpy188III	TCNNGA	1 cut(s)	301
Hpy8I	GTNNAC	2 cut(s)	72, 439
Hpy99I	CGWCG	2 cut(s)	224, 287
HpyAV	CCTTC	3 cut(s)	145, 166, 235
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4IV	ACGT	1 cut(s)	435
HpyCH4V	TGCA	2 cut(s)	332, 460
HpyF10VI	GCNNNNNNNGC	6 cut(s)	93, 252, 393, 402, 450, 457
HpySE526I	ACGT	1 cut(s)	435
Hsp92I	GRCGYC	2 cut(s)	222, 282
Hsp92II	CATG	1 cut(s)	169
HspAI	GCGC	3 cut(s)	4, 405, 451
KpnI	GGTACC	1 cut(s)	214
Kzo9I	GATC	1 cut(s)	478
LguI	GCTCTTC	1 cut(s)	273
LmnI	GCTCC	5 cut(s)	11, 96, 146, 237, 448
Lsp1109I	GCAGC	1 cut(s)	364
LweI	GCATC	1 cut(s)	135
MabI	ACCWGGT	1 cut(s)	358
MaeII	ACGT	1 cut(s)	435
MalI	GATC	1 cut(s)	480
MbiI	CCGCTC	1 cut(s)	11
MboI	GATC	1 cut(s)	478
MboII	GAAGA	3 cut(s)	112, 154, 260
MhlI	GDGCHC	1 cut(s)	529
MlyI	GAGTC	2 cut(s)	179, 384
MmeI	TCCRAC	1 cut(s)	213
MspR9I	CCNGG	2 cut(s)	360, 510
Mva1269I	GAATGC	1 cut(s)	248
MvaI	CCWGG	2 cut(s)	360, 510
MvnI	CGCG	4 cut(s)	183, 369, 453, 483
MwoI	GCNNNNNNNGC	6 cut(s)	93, 252, 393, 402, 450, 457
NdeII	GATC	1 cut(s)	478
NlaIII	CATG	1 cut(s)	169
NlaIV	GGNNCC	1 cut(s)	212
NmeAIII	GCCGAG	1 cut(s)	372
NspV	TTCGAA	1 cut(s)	271
PciSI	GCTCTTC	1 cut(s)	273
PcsI	WCGNNNNNNNCGW	5 cut(s)	156, 408, 441, 474, 550
PctI	GAATGC	1 cut(s)	248
PkrI	GCNGC	3 cut(s)	98, 133, 379
Ple19I	CGATCG	1 cut(s)	481
PleI	GAGTC	2 cut(s)	179, 384
PmaCI	CACGTG	1 cut(s)	436
PmlI	CACGTG	1 cut(s)	436
PpsI	GAGTC	2 cut(s)	179, 384
Ppu21I	YACGTR	1 cut(s)	436
Psp6I	CCWGG	2 cut(s)	358, 508
PspCI	CACGTG	1 cut(s)	436
PspGI	CCWGG	2 cut(s)	358, 508
PspN4I	GGNNCC	1 cut(s)	212
PvuI	CGATCG	1 cut(s)	481
RsaI	GTAC	3 cut(s)	212, 372, 440
RsaNI	GTAC	3 cut(s)	211, 371, 439
SapI	GCTCTTC	1 cut(s)	273
SatI	GCNGC	3 cut(s)	97, 132, 378
Sau3AI	GATC	1 cut(s)	478
SchI	GAGTC	2 cut(s)	179, 384
ScrFI	CCNGG	2 cut(s)	360, 510
SduI	GDGCHC	1 cut(s)	529
SetI	ASST	9 cut(s)	93, 111, 143, 179, 328, 337, 364, 376, 438
SexAI	ACCWGGT	1 cut(s)	358
SfaNI	GCATC	1 cut(s)	135
SfuI	TTCGAA	1 cut(s)	271
SspI	AATATT	1 cut(s)	615
StyD4I	CCNGG	2 cut(s)	358, 508
TaaI	ACNGT	1 cut(s)	76
TaiI	ACGT	1 cut(s)	438
TaqI	TCGA	4 cut(s)	219, 271, 343, 477
TauI	GCSGC	2 cut(s)	99, 134
TscAI	CASTG	1 cut(s)	235
TseI	GCWGC	1 cut(s)	377
TspDTI	ATGAA	2 cut(s)	154, 564
TspGWI	ACGGA	2 cut(s)	483, 512
TspRI	CASTG	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.