Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0006546

Physical Location & Seq

Genomic Coordinates Reverse (-)

12082855 .. 12084557

Gene Structure 1703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG126800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGGTGCACGTGCTGTGGTACTACCGGCCAGAGAAGTCGATCGGTGGCCGGAGACAGTTTTATGGATCTAAGGAGGTCTTTCTGGGTCCCAGAAGGACTGAATCAGCACTGATTATTGGTTTTTTATGGTCTCCCTCTTCCTCATACGTACTCTGGTCCAACTTTCCGCTGGGGTCTCAACTTCCGGCTGGGGTCCCAACTTCATTGCCTCAAGGAGTAAATTGGCATCAGGCTTATTATTTCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0017053 GO:0019219 GO:0019222 GO:0022607 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0031400 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0035064 GO:0035065 GO:0035067 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051239 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071840 GO:0080090 GO:0090568 GO:0097159 GO:0140030 GO:0140034 GO:0140110 GO:1901363 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000756 GO:2000757 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAH PHD

Protein Analysis

82

Amino Acids

9.47

Weight (kDa)

9.69

Isoelectric Point (pI)

80.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006546)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40410 AT2G40410
fragaria_vesca	FvH4_7g25420 FvH4_7g25420 FvH4_7g25420
malus_domestica	MD01G1160800.v1.1 MD07G1228600.v1.1
prunus_persica	Prupe.2G258500_v2.0.a1
pyrus_communis	pycom01g17670 pycom07g20700
rosa_chinensis	RchiOBHm_Chr1g0371391 RchiOBHm_Chr3g0455981
rosa_laevigata	RLG00000026967 RLG00000030163
rosa_multiflora	Rmu_co8299661.1_g000001 Rmu_sc0000809.1_g000026 Rmu_sc0027221.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232720 Rroxscaffold_4G00285730
rosa_rugosa	Rorug01G0363600
rosa_samantha	Rh1AG373700 Rh1BG337100 Rh1DG368100 Rh5BG126800
rosa_wichuraiana	Rw1G032870 Rw3G017510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	167
AclWI	GGATC	1 cut(s)	73
AcoI	YGGCCR	2 cut(s)	26, 46
AcvI	CACGTG	1 cut(s)	10
AfaI	GTAC	2 cut(s)	20, 150
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	3 cut(s)	46, 135, 180
Alw44I	GTGCAC	1 cut(s)	5
AlwI	GGATC	1 cut(s)	73
AoxI	GGCC	2 cut(s)	26, 46
ApaLI	GTGCAC	1 cut(s)	5
AspS9I	GGNCC	3 cut(s)	86, 156, 193
AvaII	GGWCC	3 cut(s)	86, 156, 193
BaeGI	GKGCMC	1 cut(s)	9
BbrPI	CACGTG	1 cut(s)	10
Bbv12I	GWGCWC	1 cut(s)	9
BcoDI	GTCTC	3 cut(s)	46, 135, 180
Bme18I	GGWCC	3 cut(s)	86, 156, 193
BmgT120I	GGNCC	3 cut(s)	86, 156, 193
BmiI	GGNNCC	4 cut(s)	87, 88, 194, 195
BmsI	GCATC	1 cut(s)	235
BpuEI	CTTGAG	1 cut(s)	195
BsaAI	YACGTR	2 cut(s)	10, 148
BsaI	GGTCTC	2 cut(s)	135, 180
Bse118I	RCCGGY	1 cut(s)	24
Bse3DI	GCAATG	1 cut(s)	203
BseMI	GCAATG	1 cut(s)	203
BseSI	GKGCMC	1 cut(s)	9
BseYI	CCCAGC	2 cut(s)	169, 188
Bsh1285I	CGRYCG	1 cut(s)	42
BshFI	GGCC	2 cut(s)	28, 48
BsiEI	CGRYCG	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	9
BsiSI	CCGG	3 cut(s)	25, 49, 185
BslFI	GGGAC	2 cut(s)	72, 179
BsmAI	GTCTC	3 cut(s)	46, 135, 180
BsmFI	GGGAC	2 cut(s)	72, 179
BsnI	GGCC	2 cut(s)	28, 48
Bso31I	GGTCTC	2 cut(s)	135, 180
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	2 cut(s)	39, 65
BspACI	CCGC	1 cut(s)	167
BspANI	GGCC	2 cut(s)	28, 48
BspLI	GGNNCC	4 cut(s)	87, 88, 194, 195
BspPI	GGATC	1 cut(s)	73
BspTNI	GGTCTC	2 cut(s)	135, 180
BsrDI	GCAATG	1 cut(s)	203
BsrFI	RCCGGY	1 cut(s)	24
BssAI	RCCGGY	1 cut(s)	24
BssMI	GATC	2 cut(s)	39, 65
Bst4CI	ACNGT	1 cut(s)	57
Bst6I	CTCTTC	1 cut(s)	142
BstBAI	YACGTR	2 cut(s)	10, 148
BstDEI	CTNAG	1 cut(s)	69
BstKTI	GATC	2 cut(s)	42, 68
BstMAI	GTCTC	3 cut(s)	46, 135, 180
BstMBI	GATC	2 cut(s)	39, 65
BstMCI	CGRYCG	1 cut(s)	42
BstSLI	GKGCMC	1 cut(s)	9
BstSNI	TACGTA	1 cut(s)	148
BstX2I	RGATCY	1 cut(s)	65
BstYI	RGATCY	1 cut(s)	65
BsuRI	GGCC	2 cut(s)	28, 48
BtsIMutI	CAGTG	1 cut(s)	107
Cfr10I	RCCGGY	1 cut(s)	24
Cfr13I	GGNCC	3 cut(s)	86, 156, 193
Csp6I	GTAC	2 cut(s)	19, 149
CviJI	RGCY	4 cut(s)	28, 48, 188, 233
CviKI_1	RGCY	4 cut(s)	28, 48, 188, 233
CviQI	GTAC	2 cut(s)	19, 149
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	2 cut(s)	41, 67
DpnII	GATC	2 cut(s)	39, 65
EaeI	YGGCCR	2 cut(s)	26, 46
Eam1104I	CTCTTC	1 cut(s)	142
EarI	CTCTTC	1 cut(s)	142
Eco105I	TACGTA	1 cut(s)	148
Eco31I	GGTCTC	2 cut(s)	135, 180
Eco47I	GGWCC	3 cut(s)	86, 156, 193
Eco72I	CACGTG	1 cut(s)	10
EcoO109I	RGGNCCY	2 cut(s)	86, 193
FaiI	YATR	3 cut(s)	63, 127, 145
FalI	AAGNNNNNCTT	2 cut(s)	62, 94
FaqI	GGGAC	2 cut(s)	72, 179
GsaI	CCCAGC	2 cut(s)	173, 192
HaeIII	GGCC	2 cut(s)	28, 48
HapII	CCGG	3 cut(s)	25, 49, 185
HinfI	GANTC	1 cut(s)	101
HpaII	CCGG	3 cut(s)	25, 49, 185
Hpy166II	GTNNAC	1 cut(s)	7
Hpy8I	GTNNAC	1 cut(s)	7
HpyAV	CCTTC	1 cut(s)	87
HpyCH4III	ACNGT	1 cut(s)	57
HpyCH4IV	ACGT	2 cut(s)	9, 147
HpyCH4V	TGCA	1 cut(s)	7
HpyF3I	CTNAG	1 cut(s)	69
HpySE526I	ACGT	2 cut(s)	9, 147
KflI	GGGWCCC	2 cut(s)	86, 193
Kzo9I	GATC	2 cut(s)	39, 65
LweI	GCATC	1 cut(s)	235
MaeII	ACGT	2 cut(s)	9, 147
MalI	GATC	2 cut(s)	41, 67
MboI	GATC	2 cut(s)	39, 65
MboII	GAAGA	1 cut(s)	129
MflI	RGATCY	1 cut(s)	65
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	1 cut(s)	220
MmeI	TCCRAC	1 cut(s)	183
MnlI	CCTC	4 cut(s)	67, 145, 151, 219
MspA1I	CMGCKG	1 cut(s)	169
MspI	CCGG	3 cut(s)	25, 49, 185
NdeII	GATC	2 cut(s)	39, 65
NlaIV	GGNNCC	4 cut(s)	87, 88, 194, 195
PfeI	GAWTC	1 cut(s)	101
Ple19I	CGATCG	1 cut(s)	42
PmaCI	CACGTG	1 cut(s)	10
PmlI	CACGTG	1 cut(s)	10
Ppu21I	YACGTR	2 cut(s)	10, 148
PpuMI	RGGWCCY	2 cut(s)	86, 193
Psp5II	RGGWCCY	2 cut(s)	86, 193
PspCI	CACGTG	1 cut(s)	10
PspFI	CCCAGC	2 cut(s)	169, 188
PspN4I	GGNNCC	4 cut(s)	87, 88, 194, 195
PspPI	GGNCC	3 cut(s)	86, 156, 193
PspPPI	RGGWCCY	2 cut(s)	86, 193
PsuI	RGATCY	1 cut(s)	65
PvuI	CGATCG	1 cut(s)	42
RsaI	GTAC	2 cut(s)	20, 150
RsaNI	GTAC	2 cut(s)	19, 149
Sau3AI	GATC	2 cut(s)	39, 65
Sau96I	GGNCC	3 cut(s)	86, 156, 193
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	3 cut(s)	12, 78, 150
SfaNI	GCATC	1 cut(s)	235
SinI	GGWCC	3 cut(s)	86, 156, 193
SmlI	CTYRAG	1 cut(s)	210
SmoI	CTYRAG	1 cut(s)	210
SnaBI	TACGTA	1 cut(s)	148
Sse9I	AATT	1 cut(s)	220
SsiI	CCGC	1 cut(s)	167
TaaI	ACNGT	1 cut(s)	57
TaiI	ACGT	2 cut(s)	12, 150
TaqI	TCGA	1 cut(s)	38
TasI	AATT	1 cut(s)	220
TfiI	GAWTC	1 cut(s)	101
TscAI	CASTG	1 cut(s)	114
TspDTI	ATGAA	1 cut(s)	192
TspRI	CASTG	1 cut(s)	114
VneI	GTGCAC	1 cut(s)	5
VpaK11BI	GGWCC	3 cut(s)	86, 156, 193
XcmI	CCANNNNNNNNNTGG	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.