Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0006546

Physical Location & Seq

Genomic Coordinates Forward (+)

19076661 .. 19080407

Gene Structure 3747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G017510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGTGGCCAAGATCAAGCGGATCAAGGCGGAGAGCTGCGGAGCCAACGTGCTGGTGCACATGCTGTGGTACTACCGGCCAGAGAAGTCGATCGGTGGCCGAACAGTTTTATAGATCTAAGGAGGTCCCAGAAGGACTGAATCAGCATGTAGTTTCATCCAAGAAAGCTCAAGCTAACTGCTGGAGAGAAGCAGGGCCACCACCAATAACAGCTGAAGAAACAGCTAGGTTTGTTATTCGAACCCTCAAGAAACACCAAAAGGCTGATGTTGAGAAATGCTTTTGTGATTATTTTTCCTGTAGTGATTATTGGTTTTTTATGGTCTCCCTCTTCCTCATACTCTGGTCCAACTTTTCGTTGGGGTCTCAACTTCCGGCTGGGGTCCCAACTTCATTGCCTCAAGGAGTAAAGTTTGAATTCCAGACACTACGGGTTGATGCAAAAGCAGTTCAAGATGGTGATTCAGTGACAGTCTATGTAAGTACAGCAGAGCCCAGGGAGTCATCCTGTGTTCCGAGCGAGGTACAGATGGCGATCATCCAAAGATCAAAAGCTTGCGAGAAGAAGAATTATACCAAGGCAGATGCACTTCACAAAAAGATCATTGACGCTGGATACCGGGTACTGCAGTTTCAAAATGAGGATGTCCTTGCATGGAAGTATAGGATTCGACTGAGGAGAATCGCTTCCTATATTCAAGGAAAAAGAACTTACCGTCTCAGCTGGAACAATAAATTGGGTATGATTGTTAAACTGGAGAGTGATATGTTGTCACATGTATCACTTATTTTTGGCAGTTTCTCAAGTTTGAGAGCTTTCTCAGTCATTTCAGTTTTCTTATTATTTAATAGATCAAACTGTTGGAGAAGAAATGAGGTGTGTGATTCAATTGTGAAGGAAAACTTTGCCAAATGTGAATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004521 GO:0004536 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006308 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0019439 GO:0034641 GO:0034655 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140097 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SNase

Protein Analysis

307

Amino Acids

35.12

Weight (kDa)

9.38

Isoelectric Point (pI)

51.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006546)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40410 AT2G40410
fragaria_vesca	FvH4_7g25420 FvH4_7g25420 FvH4_7g25420
malus_domestica	MD01G1160800.v1.1 MD07G1228600.v1.1
prunus_persica	Prupe.2G258500_v2.0.a1
pyrus_communis	pycom01g17670 pycom07g20700
rosa_chinensis	RchiOBHm_Chr1g0371391 RchiOBHm_Chr3g0455981
rosa_laevigata	RLG00000026967 RLG00000030163
rosa_multiflora	Rmu_co8299661.1_g000001 Rmu_sc0000809.1_g000026 Rmu_sc0027221.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232720 Rroxscaffold_4G00285730
rosa_rugosa	Rorug01G0363600
rosa_samantha	Rh1AG373700 Rh1BG337100 Rh1DG368100 Rh5BG126800
rosa_wichuraiana	Rw1G032870 Rw3G017510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	18, 28, 38
AclWI	GGATC	1 cut(s)	28
AcoI	YGGCCR	3 cut(s)	5, 76, 96
AcsI	RAATTY	1 cut(s)	416
AcuI	CTGAAG	1 cut(s)	234
AfaI	GTAC	4 cut(s)	70, 484, 525, 624
AflIII	ACRYGT	1 cut(s)	775
AgsI	TTSAA	5 cut(s)	416, 452, 635, 698, 888
AjnI	CCWGG	1 cut(s)	494
AjuI	GAANNNNNNNTTGG	2 cut(s)	719, 751
AluBI	AGCT	8 cut(s)	35, 167, 173, 212, 224, 554, 723, 815
AluI	AGCT	8 cut(s)	35, 167, 173, 212, 224, 554, 723, 815
Alw21I	GWGCWC	1 cut(s)	59
Alw26I	GTCTC	3 cut(s)	328, 369, 722
Alw44I	GTGCAC	1 cut(s)	55
AlwI	GGATC	1 cut(s)	28
AoxI	GGCC	4 cut(s)	5, 76, 96, 194
ApaLI	GTGCAC	1 cut(s)	55
ApeKI	GCWGC	1 cut(s)	35
ApoI	RAATTY	1 cut(s)	416
Asp700I	GAANNNNTTC	1 cut(s)	685
AspS9I	GGNCC	4 cut(s)	124, 194, 345, 382
AsuC2I	CCSGG	1 cut(s)	620
AsuHPI	GGTGA	1 cut(s)	470
AsuII	TTCGAA	1 cut(s)	238
AvaII	GGWCC	3 cut(s)	124, 345, 382
BaeGI	GKGCMC	1 cut(s)	59
BaeI	ACNNNNGTAYC	2 cut(s)	614, 647
BalI	TGGCCA	1 cut(s)	7
BanII	GRGCYC	1 cut(s)	495
Bbv12I	GWGCWC	1 cut(s)	59
BbvI	GCAGC	1 cut(s)	22
BccI	CCATC	2 cut(s)	449, 523
BciT130I	CCWGG	1 cut(s)	496
BciVI	GTATCC	1 cut(s)	608
BcnI	CCSGG	1 cut(s)	620
BcoDI	GTCTC	3 cut(s)	328, 369, 722
BfaI	CTAG	1 cut(s)	225
BfmI	CTRYAG	2 cut(s)	298, 626
BfuI	GTATCC	1 cut(s)	608
BglII	AGATCT	1 cut(s)	113
BisI	GCNGC	1 cut(s)	36
BlsI	GCNGC	1 cut(s)	37
Bme1390I	CCNGG	2 cut(s)	496, 620
Bme18I	GGWCC	3 cut(s)	124, 345, 382
BmgT120I	GGNCC	4 cut(s)	124, 194, 345, 382
BmiI	GGNNCC	4 cut(s)	42, 126, 383, 384
BmrFI	CCNGG	2 cut(s)	496, 620
BmsI	GCATC	2 cut(s)	427, 574
BpmI	CTGGAG	2 cut(s)	202, 776
Bpu14I	TTCGAA	1 cut(s)	238
BpuEI	CTTGAG	4 cut(s)	153, 230, 384, 787
BpuMI	CCSGG	1 cut(s)	620
BsaBI	GATNNNNATC	1 cut(s)	533
BsaI	GGTCTC	2 cut(s)	328, 369
BsaJI	CCNNGG	3 cut(s)	494, 495, 576
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bse118I	RCCGGY	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	759
Bse3DI	GCAATG	1 cut(s)	392
Bse8I	GATNNNNATC	1 cut(s)	533
BseBI	CCWGG	1 cut(s)	496
BseDI	CCNNGG	3 cut(s)	494, 495, 576
BseGI	GGATG	4 cut(s)	155, 503, 537, 649
BseJI	GATNNNNATC	1 cut(s)	533
BseMI	GCAATG	1 cut(s)	392
BseMII	CTCAG	3 cut(s)	665, 733, 834
BseNI	ACTGG	1 cut(s)	759
BseRI	GAGGAG	1 cut(s)	691
BseSI	GKGCMC	1 cut(s)	59
BseXI	GCAGC	1 cut(s)	22
BseYI	CCCAGC	1 cut(s)	377
Bsh1285I	CGRYCG	1 cut(s)	92
BshFI	GGCC	4 cut(s)	7, 78, 98, 196
BsiEI	CGRYCG	1 cut(s)	92
BsiHKAI	GWGCWC	1 cut(s)	59
BsiSI	CCGG	3 cut(s)	75, 374, 619
BslFI	GGGAC	2 cut(s)	110, 368
BsmAI	GTCTC	3 cut(s)	328, 369, 722
BsmBI	CGTCTC	1 cut(s)	722
BsmFI	GGGAC	2 cut(s)	110, 368
BsnI	GGCC	4 cut(s)	7, 78, 98, 196
Bso31I	GGTCTC	2 cut(s)	328, 369
Bsp119I	TTCGAA	1 cut(s)	238
Bsp1286I	GDGCHC	2 cut(s)	59, 495
Bsp143I	GATC	8 cut(s)	11, 20, 89, 113, 534, 545, 600, 851
BspACI	CCGC	3 cut(s)	18, 28, 38
BspANI	GGCC	4 cut(s)	7, 78, 98, 196
BspCNI	CTCAG	3 cut(s)	666, 732, 833
BspLI	GGNNCC	4 cut(s)	42, 126, 383, 384
BspMAI	CTGCAG	1 cut(s)	630
BspPI	GGATC	1 cut(s)	28
BspT104I	TTCGAA	1 cut(s)	238
BspTNI	GGTCTC	2 cut(s)	328, 369
BsrDI	GCAATG	1 cut(s)	392
BsrFI	RCCGGY	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	759
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	3 cut(s)	494, 495, 576
BssMI	GATC	8 cut(s)	11, 20, 89, 113, 534, 545, 600, 851
BssT1I	CCWWGG	1 cut(s)	576
Bst2UI	CCWGG	1 cut(s)	496
Bst4CI	ACNGT	4 cut(s)	105, 472, 716, 860
Bst6I	CTCTTC	1 cut(s)	335
BstBI	TTCGAA	1 cut(s)	238
BstC8I	GCNNGC	1 cut(s)	556
BstDEI	CTNAG	4 cut(s)	117, 674, 719, 820
BstF5I	GGATG	4 cut(s)	155, 503, 537, 649
BstKTI	GATC	8 cut(s)	14, 23, 92, 116, 537, 548, 603, 854
BstMAI	GTCTC	3 cut(s)	328, 369, 722
BstMBI	GATC	8 cut(s)	11, 20, 89, 113, 534, 545, 600, 851
BstMCI	CGRYCG	1 cut(s)	92
BstNI	CCWGG	1 cut(s)	496
BstNSI	RCATGY	3 cut(s)	63, 149, 779
BstSCI	CCNGG	2 cut(s)	494, 618
BstSFI	CTRYAG	2 cut(s)	298, 626
BstSLI	GKGCMC	1 cut(s)	59
BstV1I	GCAGC	1 cut(s)	22
BstX2I	RGATCY	1 cut(s)	113
BstXI	CCANNNNNNTGG	1 cut(s)	51
BstYI	RGATCY	1 cut(s)	113
BsuI	GTATCC	1 cut(s)	608
BsuRI	GGCC	4 cut(s)	7, 78, 98, 196
BtsCI	GGATG	4 cut(s)	155, 503, 537, 649
BtsIMutI	CAGTG	1 cut(s)	471
Cac8I	GCNNGC	1 cut(s)	556
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	4 cut(s)	124, 194, 345, 382
CseI	GACGC	1 cut(s)	617
Csp6I	GTAC	4 cut(s)	69, 483, 524, 623
CviAII	CATG	4 cut(s)	60, 146, 654, 776
CviQI	GTAC	4 cut(s)	69, 483, 524, 623
DdeI	CTNAG	4 cut(s)	117, 674, 719, 820
DpnI	GATC	8 cut(s)	13, 22, 91, 115, 536, 547, 602, 853
DpnII	GATC	8 cut(s)	11, 20, 89, 113, 534, 545, 600, 851
EaeI	YGGCCR	3 cut(s)	5, 76, 96
Eam1104I	CTCTTC	1 cut(s)	335
EarI	CTCTTC	1 cut(s)	335
EciI	GGCGGA	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	576
Eco24I	GRGCYC	1 cut(s)	495
Eco31I	GGTCTC	2 cut(s)	328, 369
Eco47I	GGWCC	3 cut(s)	124, 345, 382
Eco57I	CTGAAG	1 cut(s)	234
EcoO109I	RGGNCCY	2 cut(s)	124, 382
EcoRI	GAATTC	1 cut(s)	416
EcoRII	CCWGG	1 cut(s)	494
EcoT14I	CCWWGG	1 cut(s)	576
EcoT38I	GRGCYC	1 cut(s)	495
ErhI	CCWWGG	1 cut(s)	576
Esp3I	CGTCTC	1 cut(s)	722
FaeI	CATG	4 cut(s)	63, 149, 657, 779
FalI	AAGNNNNNCTT	2 cut(s)	887, 919
FaqI	GGGAC	2 cut(s)	110, 368
FatI	CATG	4 cut(s)	59, 145, 653, 775
Fnu4HI	GCNGC	1 cut(s)	36
FokI	GGATG	4 cut(s)	142, 490, 524, 656
FriOI	GRGCYC	1 cut(s)	495
Fsp4HI	GCNGC	1 cut(s)	36
FspBI	CTAG	1 cut(s)	225
GluI	GCNGC	1 cut(s)	36
GsaI	CCCAGC	1 cut(s)	381
GsuI	CTGGAG	2 cut(s)	202, 776
HaeIII	GGCC	4 cut(s)	7, 78, 98, 196
HapII	CCGG	3 cut(s)	75, 374, 619
HgaI	GACGC	1 cut(s)	617
Hin1II	CATG	4 cut(s)	63, 149, 657, 779
HindIII	AAGCTT	1 cut(s)	552
HinfI	GANTC	6 cut(s)	139, 461, 500, 667, 681, 884
HpaII	CCGG	3 cut(s)	75, 374, 619
HphI	GGTGA	1 cut(s)	470
Hpy166II	GTNNAC	1 cut(s)	57
Hpy188I	TCNGA	1 cut(s)	516
Hpy188III	TCNNGA	3 cut(s)	247, 421, 452
Hpy8I	GTNNAC	1 cut(s)	57
HpyAV	CCTTC	2 cut(s)	125, 889
HpyCH4III	ACNGT	4 cut(s)	105, 472, 716, 860
HpyCH4IV	ACGT	1 cut(s)	47
HpyCH4V	TGCA	5 cut(s)	57, 440, 587, 628, 653
HpyF3I	CTNAG	4 cut(s)	117, 674, 719, 820
HpySE526I	ACGT	1 cut(s)	47
Hsp92II	CATG	4 cut(s)	63, 149, 657, 779
KflI	GGGWCCC	1 cut(s)	382
Kzo9I	GATC	8 cut(s)	11, 20, 89, 113, 534, 545, 600, 851
LmnI	GCTCC	1 cut(s)	40
Lsp1109I	GCAGC	1 cut(s)	22
LweI	GCATC	2 cut(s)	427, 574
MaeI	CTAG	1 cut(s)	225
MaeII	ACGT	1 cut(s)	47
MaeIII	GTNAC	2 cut(s)	466, 771
MalI	GATC	8 cut(s)	13, 22, 91, 115, 536, 547, 602, 853
MboI	GATC	8 cut(s)	11, 20, 89, 113, 534, 545, 600, 851
MboII	GAAGA	5 cut(s)	227, 322, 574, 577, 879
MfeI	CAATTG	1 cut(s)	888
MflI	RGATCY	1 cut(s)	113
MhlI	GDGCHC	2 cut(s)	59, 495
MlsI	TGGCCA	1 cut(s)	7
MluCI	AATT	5 cut(s)	416, 568, 734, 888, 917
MluNI	TGGCCA	1 cut(s)	7
MlyI	GAGTC	1 cut(s)	509
MmeI	TCCRAC	2 cut(s)	372, 842
MnlI	CCTC	9 cut(s)	115, 254, 338, 344, 408, 514, 634, 669, 868
Mox20I	TGGCCA	1 cut(s)	7
MroXI	GAANNNNTTC	1 cut(s)	685
MscI	TGGCCA	1 cut(s)	7
MseI	TTAA	2 cut(s)	750, 846
Msp20I	TGGCCA	1 cut(s)	7
MspA1I	CMGCKG	2 cut(s)	212, 723
MspI	CCGG	3 cut(s)	75, 374, 619
MspR9I	CCNGG	2 cut(s)	496, 620
MunI	CAATTG	1 cut(s)	888
MvaI	CCWGG	1 cut(s)	496
NciI	CCSGG	1 cut(s)	620
NdeII	GATC	8 cut(s)	11, 20, 89, 113, 534, 545, 600, 851
NlaIII	CATG	4 cut(s)	63, 149, 657, 779
NlaIV	GGNNCC	4 cut(s)	42, 126, 383, 384
NmuCI	GTSAC	2 cut(s)	466, 771
NspI	RCATGY	3 cut(s)	63, 149, 779
NspV	TTCGAA	1 cut(s)	238
PasI	CCCWGGG	1 cut(s)	495
PciI	ACATGT	1 cut(s)	775
PdmI	GAANNNNTTC	1 cut(s)	685
PfeI	GAWTC	5 cut(s)	139, 461, 667, 681, 884
PkrI	GCNGC	1 cut(s)	37
Ple19I	CGATCG	1 cut(s)	92
PleI	GAGTC	1 cut(s)	508
PpsI	GAGTC	1 cut(s)	508
PpuMI	RGGWCCY	2 cut(s)	124, 382
PscI	ACATGT	1 cut(s)	775
Psp5II	RGGWCCY	2 cut(s)	124, 382
Psp6I	CCWGG	1 cut(s)	494
PspFI	CCCAGC	1 cut(s)	377
PspGI	CCWGG	1 cut(s)	494
PspN4I	GGNNCC	4 cut(s)	42, 126, 383, 384
PspPI	GGNCC	4 cut(s)	124, 194, 345, 382
PspPPI	RGGWCCY	2 cut(s)	124, 382
PstI	CTGCAG	1 cut(s)	630
PsuI	RGATCY	1 cut(s)	113
PvuI	CGATCG	1 cut(s)	92
PvuII	CAGCTG	2 cut(s)	212, 723
RsaI	GTAC	4 cut(s)	70, 484, 525, 624
RsaNI	GTAC	4 cut(s)	69, 483, 524, 623
SaqAI	TTAA	2 cut(s)	750, 846
SatI	GCNGC	1 cut(s)	36
Sau3AI	GATC	8 cut(s)	11, 20, 89, 113, 534, 545, 600, 851
Sau96I	GGNCC	4 cut(s)	124, 194, 345, 382
SchI	GAGTC	1 cut(s)	509
ScrFI	CCNGG	2 cut(s)	496, 620
SduI	GDGCHC	2 cut(s)	59, 495
SfaNI	GCATC	2 cut(s)	427, 574
SfcI	CTRYAG	2 cut(s)	298, 626
SfuI	TTCGAA	1 cut(s)	238
SinI	GGWCC	3 cut(s)	124, 345, 382
SmlI	CTYRAG	4 cut(s)	168, 245, 399, 802
SmoI	CTYRAG	4 cut(s)	168, 245, 399, 802
Sse9I	AATT	5 cut(s)	416, 568, 734, 888, 917
SsiI	CCGC	3 cut(s)	18, 28, 38
SspMI	CTAG	1 cut(s)	225
StyD4I	CCNGG	2 cut(s)	494, 618
StyI	CCWWGG	1 cut(s)	576
TaaI	ACNGT	4 cut(s)	105, 472, 716, 860
TaiI	ACGT	1 cut(s)	50
TaqI	TCGA	3 cut(s)	88, 238, 670
TasI	AATT	5 cut(s)	416, 568, 734, 888, 917
TatI	WGTACW	1 cut(s)	482
TfiI	GAWTC	5 cut(s)	139, 461, 667, 681, 884
Tru1I	TTAA	2 cut(s)	750, 846
Tru9I	TTAA	2 cut(s)	750, 846
TscAI	CASTG	1 cut(s)	471
TseFI	GTSAC	2 cut(s)	466, 771
TseI	GCWGC	1 cut(s)	35
Tsp45I	GTSAC	2 cut(s)	466, 771
TspDTI	ATGAA	2 cut(s)	144, 381
TspRI	CASTG	1 cut(s)	471
VneI	GTGCAC	1 cut(s)	55
VpaK11BI	GGWCC	3 cut(s)	124, 345, 382
XapI	RAATTY	1 cut(s)	416
XceI	RCATGY	3 cut(s)	63, 149, 779
XcmI	CCANNNNNNNNNTGG	1 cut(s)	355
XmnI	GAANNNNTTC	1 cut(s)	685
XspI	CTAG	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.