Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0006546

Physical Location & Seq

Genomic Coordinates Forward (+)

22687483 .. 22689425

Gene Structure 1943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g20700.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGGGTTGTTGGGAAGCTTCATAAGGTTCCTGTTGGGGCAATGGTGCAAACCCACCACCACCGGAGGGGACTACTCTGAATCACTTGGCCCTCACGGCGTGTCCGCCGCCACTGTCGGCGTTTCGGCTCTTGCCCAAGACCTCTACAACTTCGAGATCGACCTCTCAGTTTGGGTCCCAGAAGGGCTCGCTCAGCATGTGGTCTCGTCCAGGAAGGCTCAAGCTAACTGGTATAGAAAACTAGTTGTCGCATGGAGGGAAGCCAAACCGCCACCAAGAACACCCGAAGAAGCGGCTAGGCTTGTTATACAAACCCTGAAACAACACCAAAGGCCGGATGTTGAGGGTTTATTGGCTTTCTACGGCCTTCCTCTTCCACATACTCTGGTCAGTCTTTCTGCTGAGGTCCCAACTTCGTTGCCTCAAGGAGTAAAGTACGAGTTCCGGACGCTGCCGGTTGATGGAAAAGCGATTCAAGATGGCGATTCGATGACAGTCTACGTCAGCACAGAGGATCCCAGGGAGTCGTCCTTTGTTCCGATCGATGTGCAAAGAGCTGCCATTCAAAGATCGAAAGCTCGCGCCGTGAGGGACTATACAAAGGCAGATGCACTTAATCAGAAAATCAAAGATGCTGGATACGGGGTACTGAATATTCAAAACGAGGAGATCCTTGCCCGAAAGTATAGGATCCGTCTGAGGGGTATAGATGCACCCGAGGGTGAAATGCCCTATGGAGAAGAAGCCAAACAGGAGCTGGTTAAGCTTATTCAGGGCAAGCGTTTGAGGGTTCTTATCTATGGGGAAGATCGTTACGGGCGCTGTGTAGGTGACGTATACTGCAACGACATATTTGTACAGGAAGTAATGCTCAAGAAGGGGTGTGCATGGCATTACGCAGCCTACGACCAACGCCCAGAATTTGCAACATGGGAAAAAAAGGCTCGGGCGAAGCGAGTTGGGTTGTGGGCTTCATCAAACCCTGAGAAGCCATGGGATTGGAGAAGGGATCGGCGTGAAGGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004521 GO:0004536 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006308 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0019439 GO:0034641 GO:0034655 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140097 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SNase

Protein Analysis

343

Amino Acids

38.66

Weight (kDa)

9.06

Isoelectric Point (pI)

36.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006546)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40410 AT2G40410
fragaria_vesca	FvH4_7g25420 FvH4_7g25420 FvH4_7g25420
malus_domestica	MD01G1160800.v1.1 MD07G1228600.v1.1
prunus_persica	Prupe.2G258500_v2.0.a1
pyrus_communis	pycom01g17670 pycom07g20700
rosa_chinensis	RchiOBHm_Chr1g0371391 RchiOBHm_Chr3g0455981
rosa_laevigata	RLG00000026967 RLG00000030163
rosa_multiflora	Rmu_co8299661.1_g000001 Rmu_sc0000809.1_g000026 Rmu_sc0027221.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232720 Rroxscaffold_4G00285730
rosa_rugosa	Rorug01G0363600
rosa_samantha	Rh1AG373700 Rh1BG337100 Rh1DG368100 Rh5BG126800
rosa_wichuraiana	Rw1G032870 Rw3G017510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	498, 837
AccII	CGCG	1 cut(s)	582
AccIII	TCCGGA	1 cut(s)	444
AciI	CCGC	4 cut(s)	105, 108, 269, 293
AclWI	GGATC	6 cut(s)	509, 522, 664, 685, 698, 1017
AcsI	RAATTY	1 cut(s)	920
AdeI	CACNNNGTG	1 cut(s)	100
AfaI	GTAC	3 cut(s)	437, 648, 858
AfiI	CCNNNNNNNGG	4 cut(s)	66, 334, 461, 700
AgsI	TTSAA	3 cut(s)	476, 566, 659
AhlI	ACTAGT	1 cut(s)	241
AjnI	CCWGG	2 cut(s)	209, 518
AluBI	AGCT	6 cut(s)	18, 224, 557, 578, 757, 766
AluI	AGCT	6 cut(s)	18, 224, 557, 578, 757, 766
Alw26I	GTCTC	1 cut(s)	208
AlwI	GGATC	6 cut(s)	509, 522, 664, 685, 698, 1017
AlwNI	CAGNNNCTG	1 cut(s)	757
Ama87I	CYCGRG	2 cut(s)	716, 945
Aor13HI	TCCGGA	1 cut(s)	444
AoxI	GGCC	3 cut(s)	88, 332, 364
ApeKI	GCWGC	3 cut(s)	451, 557, 899
ApoI	RAATTY	1 cut(s)	920
AspLEI	GCGC	2 cut(s)	584, 822
AspS9I	GGNCC	3 cut(s)	89, 175, 406
AsuHPI	GGTGA	2 cut(s)	734, 842
AvaI	CYCGRG	2 cut(s)	716, 945
AvaII	GGWCC	2 cut(s)	175, 406
BamHI	GGATCC	2 cut(s)	514, 690
BanII	GRGCYC	1 cut(s)	189
BbvCI	CCTCAGC	1 cut(s)	402
BbvI	GCAGC	3 cut(s)	438, 544, 911
BccI	CCATC	2 cut(s)	455, 473
BceAI	ACGGC	3 cut(s)	112, 379, 569
BcgI	CGANNNNNNTGC	2 cut(s)	529, 563
BciT130I	CCWGG	2 cut(s)	211, 520
BciVI	GTATCC	1 cut(s)	632
BcoDI	GTCTC	1 cut(s)	208
BcuI	ACTAGT	1 cut(s)	241
BfaI	CTAG	2 cut(s)	242, 297
BfoI	RGCGCY	1 cut(s)	823
BfuI	GTATCC	1 cut(s)	632
BglI	GCCNNNNNGGC	1 cut(s)	96
BisI	GCNGC	5 cut(s)	108, 294, 452, 558, 900
BlpI	GCTNAGC	1 cut(s)	192
BlsI	GCNGC	5 cut(s)	109, 295, 453, 559, 901
Bme1390I	CCNGG	2 cut(s)	211, 520
Bme18I	GGWCC	2 cut(s)	175, 406
BmeT110I	CYCGRG	2 cut(s)	716, 945
BmgT120I	GGNCC	3 cut(s)	89, 175, 406
BmiI	GGNNCC	6 cut(s)	29, 176, 177, 408, 516, 692
BmrFI	CCNGG	2 cut(s)	211, 520
BmsI	GCATC	3 cut(s)	598, 622, 700
Bpu10I	CCTNAGC	1 cut(s)	402
Bpu1102I	GCTNAGC	1 cut(s)	192
BpuEI	CTTGAG	3 cut(s)	204, 408, 857
Bsa29I	ATCGAT	1 cut(s)	543
BsaI	GGTCTC	1 cut(s)	208
BsaJI	CCNNGG	4 cut(s)	518, 519, 717, 992
BsaWI	WCCGGW	2 cut(s)	62, 444
Bsc4I	CCNNNNNNNGG	4 cut(s)	66, 334, 461, 700
Bse118I	RCCGGY	1 cut(s)	454
Bse1I	ACTGG	1 cut(s)	233
Bse3DI	GCAATG	1 cut(s)	47
BseAI	TCCGGA	1 cut(s)	444
BseBI	CCWGG	2 cut(s)	211, 520
BseCI	ATCGAT	1 cut(s)	543
BseDI	CCNNGG	4 cut(s)	518, 519, 717, 992
BseGI	GGATG	1 cut(s)	343
BseLI	CCNNNNNNNGG	4 cut(s)	66, 334, 461, 700
BseMI	GCAATG	1 cut(s)	47
BseMII	CTCAG	5 cut(s)	180, 206, 393, 689, 975
BseNI	ACTGG	1 cut(s)	233
BseRI	GAGGAG	1 cut(s)	680
BseXI	GCAGC	3 cut(s)	438, 544, 911
Bsh1236I	CGCG	1 cut(s)	582
Bsh1285I	CGRYCG	1 cut(s)	543
BshFI	GGCC	3 cut(s)	90, 334, 366
BshVI	ATCGAT	1 cut(s)	543
BsiEI	CGRYCG	1 cut(s)	543
BsiHKCI	CYCGRG	2 cut(s)	716, 945
BsiSI	CCGG	4 cut(s)	63, 335, 445, 455
BslFI	GGGAC	4 cut(s)	83, 161, 392, 605
BslI	CCNNNNNNNGG	4 cut(s)	66, 334, 461, 700
BsmAI	GTCTC	1 cut(s)	208
BsmFI	GGGAC	4 cut(s)	83, 161, 392, 605
BsnI	GGCC	3 cut(s)	90, 334, 366
Bso31I	GGTCTC	1 cut(s)	208
BsoBI	CYCGRG	2 cut(s)	716, 945
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp13I	TCCGGA	1 cut(s)	444
Bsp1407I	TGTACA	1 cut(s)	856
Bsp143I	GATC	8 cut(s)	156, 514, 540, 569, 669, 690, 808, 1009
Bsp1720I	GCTNAGC	1 cut(s)	192
Bsp19I	CCATGG	1 cut(s)	992
BspACI	CCGC	4 cut(s)	105, 108, 269, 293
BspANI	GGCC	3 cut(s)	90, 334, 366
BspCNI	CTCAG	5 cut(s)	179, 205, 394, 690, 976
BspDI	ATCGAT	1 cut(s)	543
BspEI	TCCGGA	1 cut(s)	444
BspFNI	CGCG	1 cut(s)	582
BspLI	GGNNCC	6 cut(s)	29, 176, 177, 408, 516, 692
BspPI	GGATC	6 cut(s)	509, 522, 664, 685, 698, 1017
BspTNI	GGTCTC	1 cut(s)	208
BsrDI	GCAATG	1 cut(s)	47
BsrFI	RCCGGY	1 cut(s)	454
BsrGI	TGTACA	1 cut(s)	856
BsrI	ACTGG	1 cut(s)	233
BssAI	RCCGGY	1 cut(s)	454
BssECI	CCNNGG	4 cut(s)	518, 519, 717, 992
BssMI	GATC	8 cut(s)	156, 514, 540, 569, 669, 690, 808, 1009
BssNAI	GTATAC	1 cut(s)	838
BssT1I	CCWWGG	1 cut(s)	992
Bst1107I	GTATAC	1 cut(s)	838
Bst2UI	CCWGG	2 cut(s)	211, 520
Bst4CI	ACNGT	2 cut(s)	115, 496
Bst6I	CTCTTC	1 cut(s)	378
BstAUI	TGTACA	1 cut(s)	856
BstC8I	GCNNGC	3 cut(s)	189, 580, 779
BstDEI	CTNAG	5 cut(s)	166, 192, 402, 698, 984
BstDSI	CCRYGG	1 cut(s)	992
BstF5I	GGATG	1 cut(s)	343
BstFNI	CGCG	1 cut(s)	582
BstH2I	RGCGCY	1 cut(s)	823
BstHHI	GCGC	2 cut(s)	584, 822
BstKTI	GATC	8 cut(s)	159, 517, 543, 572, 672, 693, 811, 1012
BstMAI	GTCTC	1 cut(s)	208
BstMBI	GATC	8 cut(s)	156, 514, 540, 569, 669, 690, 808, 1009
BstMCI	CGRYCG	1 cut(s)	543
BstMWI	GCNNNNNNNGC	3 cut(s)	96, 193, 763
BstNI	CCWGG	2 cut(s)	211, 520
BstNSI	RCATGY	1 cut(s)	200
BstSCI	CCNGG	2 cut(s)	209, 518
BstUI	CGCG	1 cut(s)	582
BstV1I	GCAGC	3 cut(s)	438, 544, 911
BstX2I	RGATCY	3 cut(s)	514, 669, 690
BstXI	CCANNNNNNTGG	1 cut(s)	999
BstYI	RGATCY	3 cut(s)	514, 669, 690
BstZ17I	GTATAC	1 cut(s)	838
Bsu15I	ATCGAT	1 cut(s)	543
BsuI	GTATCC	1 cut(s)	632
BsuRI	GGCC	3 cut(s)	90, 334, 366
BsuTUI	ATCGAT	1 cut(s)	543
BtgI	CCRYGG	1 cut(s)	992
BtsCI	GGATG	1 cut(s)	343
BtsIMutI	CAGTG	1 cut(s)	111
Cac8I	GCNNGC	3 cut(s)	189, 580, 779
CaiI	CAGNNNCTG	1 cut(s)	757
CfoI	GCGC	2 cut(s)	584, 822
Cfr10I	RCCGGY	1 cut(s)	454
Cfr13I	GGNCC	3 cut(s)	89, 175, 406
ClaI	ATCGAT	1 cut(s)	543
CseI	GACGC	1 cut(s)	457
Csp6I	GTAC	3 cut(s)	436, 647, 857
CviAII	CATG	5 cut(s)	197, 252, 888, 930, 993
CviQI	GTAC	3 cut(s)	436, 647, 857
DdeI	CTNAG	5 cut(s)	166, 192, 402, 698, 984
DpnI	GATC	8 cut(s)	158, 516, 542, 571, 671, 692, 810, 1011
DpnII	GATC	8 cut(s)	156, 514, 540, 569, 669, 690, 808, 1009
DraIII	CACNNNGTG	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
EciI	GGCGGA	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	992
Eco24I	GRGCYC	1 cut(s)	189
Eco31I	GGTCTC	1 cut(s)	208
Eco47I	GGWCC	2 cut(s)	175, 406
Eco88I	CYCGRG	2 cut(s)	716, 945
EcoO109I	RGGNCCY	2 cut(s)	175, 406
EcoRII	CCWGG	2 cut(s)	209, 518
EcoT14I	CCWWGG	1 cut(s)	992
EcoT38I	GRGCYC	1 cut(s)	189
ErhI	CCWWGG	1 cut(s)	992
FaeI	CATG	5 cut(s)	200, 255, 891, 933, 996
FaqI	GGGAC	4 cut(s)	83, 161, 392, 605
FatI	CATG	5 cut(s)	196, 251, 887, 929, 992
FblI	GTMKAC	2 cut(s)	498, 837
Fnu4HI	GCNGC	5 cut(s)	108, 294, 452, 558, 900
FokI	GGATG	1 cut(s)	350
FriOI	GRGCYC	1 cut(s)	189
Fsp4HI	GCNGC	5 cut(s)	108, 294, 452, 558, 900
FspBI	CTAG	2 cut(s)	242, 297
GlaI	GCGC	2 cut(s)	583, 821
GluI	GCNGC	5 cut(s)	108, 294, 452, 558, 900
HaeII	RGCGCY	1 cut(s)	823
HaeIII	GGCC	3 cut(s)	90, 334, 366
HapII	CCGG	4 cut(s)	63, 335, 445, 455
HgaI	GACGC	1 cut(s)	457
HhaI	GCGC	2 cut(s)	584, 822
Hin1II	CATG	5 cut(s)	200, 255, 891, 933, 996
Hin6I	GCGC	2 cut(s)	582, 820
HinP1I	GCGC	2 cut(s)	582, 820
HindIII	AAGCTT	2 cut(s)	16, 764
HinfI	GANTC	4 cut(s)	80, 472, 485, 524
HpaII	CCGG	4 cut(s)	63, 335, 445, 455
HphI	GGTGA	2 cut(s)	734, 842
Hpy166II	GTNNAC	2 cut(s)	499, 838
Hpy188I	TCNGA	4 cut(s)	79, 540, 621, 699
Hpy188III	TCNNGA	4 cut(s)	154, 445, 476, 874
Hpy8I	GTNNAC	2 cut(s)	499, 838
HpyAV	CCTTC	6 cut(s)	176, 208, 377, 871, 999, 1013
HpyCH4III	ACNGT	2 cut(s)	115, 496
HpyCH4IV	ACGT	2 cut(s)	501, 834
HpyCH4V	TGCA	7 cut(s)	48, 550, 611, 713, 843, 887, 926
HpyF10VI	GCNNNNNNNGC	3 cut(s)	96, 193, 763
HpyF3I	CTNAG	5 cut(s)	166, 192, 402, 698, 984
HpySE526I	ACGT	2 cut(s)	501, 834
Hsp92II	CATG	5 cut(s)	200, 255, 891, 933, 996
HspAI	GCGC	2 cut(s)	582, 820
KflI	GGGWCCC	1 cut(s)	175
Kpn2I	TCCGGA	1 cut(s)	444
Kzo9I	GATC	8 cut(s)	156, 514, 540, 569, 669, 690, 808, 1009
LmnI	GCTCC	1 cut(s)	754
Lsp1109I	GCAGC	3 cut(s)	438, 544, 911
LweI	GCATC	3 cut(s)	598, 622, 700
MaeI	CTAG	2 cut(s)	242, 297
MaeII	ACGT	2 cut(s)	501, 834
MaeIII	GTNAC	2 cut(s)	812, 830
MalI	GATC	8 cut(s)	158, 516, 542, 571, 671, 692, 810, 1011
MboI	GATC	8 cut(s)	156, 514, 540, 569, 669, 690, 808, 1009
MboII	GAAGA	4 cut(s)	299, 365, 752, 818
MflI	RGATCY	3 cut(s)	514, 669, 690
MhlI	GDGCHC	1 cut(s)	189
MluCI	AATT	1 cut(s)	920
MlyI	GAGTC	1 cut(s)	533
MroI	TCCGGA	1 cut(s)	444
MseI	TTAA	2 cut(s)	615, 762
MspI	CCGG	4 cut(s)	63, 335, 445, 455
MspR9I	CCNGG	2 cut(s)	211, 520
MvaI	CCWGG	2 cut(s)	211, 520
MvnI	CGCG	1 cut(s)	582
MwoI	GCNNNNNNNGC	3 cut(s)	96, 193, 763
NcoI	CCATGG	1 cut(s)	992
NdeII	GATC	8 cut(s)	156, 514, 540, 569, 669, 690, 808, 1009
NlaIII	CATG	5 cut(s)	200, 255, 891, 933, 996
NlaIV	GGNNCC	6 cut(s)	29, 176, 177, 408, 516, 692
NmuCI	GTSAC	1 cut(s)	830
NspI	RCATGY	1 cut(s)	200
PasI	CCCWGGG	1 cut(s)	519
PcsI	WCGNNNNNNNCGW	2 cut(s)	903, 952
PfeI	GAWTC	3 cut(s)	80, 472, 485
PfoI	TCCNGGA	1 cut(s)	209
PkrI	GCNGC	5 cut(s)	109, 295, 453, 559, 901
Ple19I	CGATCG	1 cut(s)	543
PleI	GAGTC	1 cut(s)	532
PpsI	GAGTC	1 cut(s)	532
PpuMI	RGGWCCY	2 cut(s)	175, 406
Psp5II	RGGWCCY	2 cut(s)	175, 406
Psp6I	CCWGG	2 cut(s)	209, 518
PspGI	CCWGG	2 cut(s)	209, 518
PspN4I	GGNNCC	6 cut(s)	29, 176, 177, 408, 516, 692
PspPI	GGNCC	3 cut(s)	89, 175, 406
PspPPI	RGGWCCY	2 cut(s)	175, 406
PstNI	CAGNNNCTG	1 cut(s)	757
PsuI	RGATCY	3 cut(s)	514, 669, 690
PvuI	CGATCG	1 cut(s)	543
RsaI	GTAC	3 cut(s)	437, 648, 858
RsaNI	GTAC	3 cut(s)	436, 647, 857
SaqAI	TTAA	2 cut(s)	615, 762
SatI	GCNGC	5 cut(s)	108, 294, 452, 558, 900
Sau3AI	GATC	8 cut(s)	156, 514, 540, 569, 669, 690, 808, 1009
Sau96I	GGNCC	3 cut(s)	89, 175, 406
SchI	GAGTC	1 cut(s)	533
ScrFI	CCNGG	2 cut(s)	211, 520
SduI	GDGCHC	1 cut(s)	189
SfaNI	GCATC	3 cut(s)	598, 622, 700
SinI	GGWCC	2 cut(s)	175, 406
SmlI	CTYRAG	3 cut(s)	219, 423, 872
SmoI	CTYRAG	3 cut(s)	219, 423, 872
SpeI	ACTAGT	1 cut(s)	241
Sse9I	AATT	1 cut(s)	920
SsiI	CCGC	4 cut(s)	105, 108, 269, 293
SspI	AATATT	1 cut(s)	655
SspMI	CTAG	2 cut(s)	242, 297
StyD4I	CCNGG	2 cut(s)	209, 518
StyI	CCWWGG	1 cut(s)	992
TaaI	ACNGT	2 cut(s)	115, 496
TaiI	ACGT	2 cut(s)	504, 837
TaqI	TCGA	5 cut(s)	153, 159, 488, 543, 572
TasI	AATT	1 cut(s)	920
TatI	WGTACW	1 cut(s)	856
TauI	GCSGC	2 cut(s)	110, 296
TfiI	GAWTC	3 cut(s)	80, 472, 485
Tru1I	TTAA	2 cut(s)	615, 762
Tru9I	TTAA	2 cut(s)	615, 762
TscAI	CASTG	1 cut(s)	118
TseFI	GTSAC	1 cut(s)	830
TseI	GCWGC	3 cut(s)	451, 557, 899
Tsp45I	GTSAC	1 cut(s)	830
TspDTI	ATGAA	2 cut(s)	10, 963
TspGWI	ACGGA	1 cut(s)	683
TspRI	CASTG	1 cut(s)	118
VpaK11BI	GGWCC	2 cut(s)	175, 406
XapI	RAATTY	1 cut(s)	920
XceI	RCATGY	1 cut(s)	200
XcmI	CCANNNNNNNNNTGG	1 cut(s)	754
XmiI	GTMKAC	2 cut(s)	498, 837
XspI	CTAG	2 cut(s)	242, 297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.