Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0006546

Physical Location & Seq

Genomic Coordinates Forward (+)

26939291 .. 26941323

Gene Structure 2033 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G258500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGGGTTGTTGGGAAAATTCTTAAGGTTCCTGTTGGAGCTGGGGGATTGCTGCAAACCCACAGGCGGCAACTCTGAGTCGCTTGGGCCTCACGGCGTCTCTGCTGCCACAGTCGGCGTTTCGGGTCTTGCCCACGACCTCTTCAATTTTGAGACCACCTCTCAGGTCCCAGAAGGACTCAGTCAGCATGTTGTTTCATCCAAGAAGGCTCAAGCTAACTGGTACAGAAAACTAGTTGAGACATGGAGAGAAGCAAAGCCACCACCAAGAACAGACGAAGAGGCGGCTACGCTTGTTATACAAACCCTCAAGGGACACAAAAAGGCTGATGTCCAGGGCTTATTGGCTTTCTATGGTCTCCCTCATCCCAATACTCTGGTCCAAGTTTCTGCTGGGGTCCCAACTTCATTGCCTCAAGGAGTAAAGTTTGAGTTCCAGACACTTCCAGTCGATGTAAAAGCAATTCCAGATGGAGATACAGTGACTGTGTATGTCAGCACAGAAGATCCCAGAGAATCTTCCTGTGTTCCGAGCGATGTGAAGACAGCAGCCATCCAAAGATCAAAAGCACGCGCTAAGAAGAATTATACGAAGGCAGATGAACTTCACAAAAAAATCATTGATGCTGGATATCGGGTACTGAACATTCAAAATCAAGAGATCCTTGCCCGAAAGTATCGGATTCGACTGAGGGGTATAGACTCGCCGGAGAGTTCAATGCCGTATGGAAAAGAAGCCAAACAGGAGTTGGTTAAGCTTATTGAGGGCAAGAGCTTGAGGGTCCTTGTCTATGGAGAAGACCGTTATGGCCGTTGTGTAGGTGACATATATAGCAATGGCATATTTGCACAGGAAGTAATGCTCAAGAAGGGGTGTGCATGGCATTACACCGCCTACGACCAGCGCTCAGAACTTGCAAGATGGGAAGAAGAGGCTCGATTGAAGCGAGTTGGGTTATGGGCTTCATCAAATCCTGAGAAGCCGTGGGAATGGAGAAAGCATAGACGCGAAGCCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004521 GO:0004536 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006308 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0019439 GO:0034641 GO:0034655 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140097 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SNase

Protein Analysis

340

Amino Acids

37.96

Weight (kDa)

9.23

Isoelectric Point (pI)

36.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006546)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40410 AT2G40410
fragaria_vesca	FvH4_7g25420 FvH4_7g25420 FvH4_7g25420
malus_domestica	MD01G1160800.v1.1 MD07G1228600.v1.1
prunus_persica	Prupe.2G258500_v2.0.a1
pyrus_communis	pycom01g17670 pycom07g20700
rosa_chinensis	RchiOBHm_Chr1g0371391 RchiOBHm_Chr3g0455981
rosa_laevigata	RLG00000026967 RLG00000030163
rosa_multiflora	Rmu_co8299661.1_g000001 Rmu_sc0000809.1_g000026 Rmu_sc0027221.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232720 Rroxscaffold_4G00285730
rosa_rugosa	Rorug01G0363600
rosa_samantha	Rh1AG373700 Rh1BG337100 Rh1DG368100 Rh5BG126800
rosa_wichuraiana	Rw1G032870 Rw3G017510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	573, 1008
AciI	CCGC	3 cut(s)	66, 284, 891
AclWI	GGATC	2 cut(s)	500, 655
AcoI	YGGCCR	1 cut(s)	808
AcsI	RAATTY	1 cut(s)	17
AcyI	GRCGYC	1 cut(s)	96
AfaI	GTAC	2 cut(s)	224, 639
AfeI	AGCGCT	1 cut(s)	905
AfiI	CCNNNNNNNGG	1 cut(s)	65
AflII	CTTAAG	1 cut(s)	22
AgsI	TTSAA	4 cut(s)	145, 650, 717, 943
AhlI	ACTAGT	1 cut(s)	232
AjnI	CCWGG	1 cut(s)	333
AluBI	AGCT	4 cut(s)	40, 215, 757, 774
AluI	AGCT	4 cut(s)	40, 215, 757, 774
Alw26I	GTCTC	4 cut(s)	103, 146, 233, 362
AlwI	GGATC	2 cut(s)	500, 655
AlwNI	CAGNNNCTG	1 cut(s)	485
Aor51HI	AGCGCT	1 cut(s)	905
AoxI	GGCC	2 cut(s)	86, 808
ApeKI	GCWGC	3 cut(s)	51, 104, 548
ApoI	RAATTY	1 cut(s)	17
AspLEI	GCGC	2 cut(s)	575, 906
AspS9I	GGNCC	5 cut(s)	86, 166, 379, 397, 781
AsuHPI	GGTGA	1 cut(s)	833
AvaII	GGWCC	4 cut(s)	166, 379, 397, 781
BbsI	GAAGAC	2 cut(s)	548, 804
BbvI	GCAGC	3 cut(s)	38, 91, 560
BccI	CCATC	3 cut(s)	464, 560, 915
BceAI	ACGGC	4 cut(s)	109, 706, 795, 967
BciT130I	CCWGG	1 cut(s)	335
BcoDI	GTCTC	4 cut(s)	103, 146, 233, 362
BcuI	ACTAGT	1 cut(s)	232
BfaI	CTAG	1 cut(s)	233
BfoI	RGCGCY	1 cut(s)	907
BfrI	CTTAAG	1 cut(s)	22
BisI	GCNGC	5 cut(s)	52, 67, 105, 285, 549
BlsI	GCNGC	5 cut(s)	53, 68, 106, 286, 550
Bme1390I	CCNGG	1 cut(s)	335
Bme18I	GGWCC	4 cut(s)	166, 379, 397, 781
BmgT120I	GGNCC	5 cut(s)	86, 166, 379, 397, 781
BmiI	GGNNCC	5 cut(s)	29, 168, 398, 399, 782
BmrFI	CCNGG	1 cut(s)	335
BmsI	GCATC	1 cut(s)	613
BpiI	GAAGAC	2 cut(s)	548, 804
BplI	GAGNNNNNCTC	2 cut(s)	143, 175
BpuEI	CTTGAG	5 cut(s)	195, 293, 399, 796, 848
BsaHI	GRCGYC	1 cut(s)	96
BsaI	GGTCTC	2 cut(s)	146, 362
BsaJI	CCNNGG	2 cut(s)	334, 983
BsaXI	ACNNNNNCTCC	2 cut(s)	465, 495
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
Bse1I	ACTGG	2 cut(s)	224, 446
Bse3DI	GCAATG	2 cut(s)	407, 841
BseBI	CCWGG	1 cut(s)	335
BseDI	CCNNGG	2 cut(s)	334, 983
BseGI	GGATG	3 cut(s)	197, 364, 552
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseMI	GCAATG	2 cut(s)	407, 841
BseMII	CTCAG	6 cut(s)	66, 176, 193, 680, 921, 966
BseNI	ACTGG	2 cut(s)	224, 446
BseXI	GCAGC	3 cut(s)	38, 91, 560
BseYI	CCCAGC	2 cut(s)	40, 392
Bsh1236I	CGCG	2 cut(s)	573, 1008
BshFI	GGCC	2 cut(s)	88, 810
BsiSI	CCGG	1 cut(s)	707
BslFI	GGGAC	3 cut(s)	152, 327, 383
BslI	CCNNNNNNNGG	1 cut(s)	65
BsmAI	GTCTC	4 cut(s)	103, 146, 233, 362
BsmBI	CGTCTC	1 cut(s)	103
BsmFI	GGGAC	3 cut(s)	152, 327, 383
BsnI	GGCC	2 cut(s)	88, 810
Bso31I	GGTCTC	2 cut(s)	146, 362
Bsp143I	GATC	3 cut(s)	505, 560, 660
BspACI	CCGC	3 cut(s)	66, 284, 891
BspANI	GGCC	2 cut(s)	88, 810
BspCNI	CTCAG	6 cut(s)	67, 175, 192, 681, 920, 967
BspFNI	CGCG	2 cut(s)	573, 1008
BspLI	GGNNCC	5 cut(s)	29, 168, 398, 399, 782
BspPI	GGATC	2 cut(s)	500, 655
BspTI	CTTAAG	1 cut(s)	22
BspTNI	GGTCTC	2 cut(s)	146, 362
BsrDI	GCAATG	2 cut(s)	407, 841
BsrI	ACTGG	2 cut(s)	224, 446
BssECI	CCNNGG	2 cut(s)	334, 983
BssMI	GATC	3 cut(s)	505, 560, 660
BssNI	GRCGYC	1 cut(s)	96
Bst2UI	CCWGG	1 cut(s)	335
Bst4CI	ACNGT	4 cut(s)	112, 481, 487, 803
Bst6I	CTCTTC	3 cut(s)	146, 273, 924
BstACI	GRCGYC	1 cut(s)	96
BstAFI	CTTAAG	1 cut(s)	22
BstC8I	GCNNGC	1 cut(s)	571
BstDEI	CTNAG	7 cut(s)	75, 162, 179, 576, 689, 907, 975
BstDSI	CCRYGG	1 cut(s)	983
BstF5I	GGATG	3 cut(s)	197, 364, 552
BstFNI	CGCG	2 cut(s)	573, 1008
BstH2I	RGCGCY	1 cut(s)	907
BstHHI	GCGC	2 cut(s)	575, 906
BstKTI	GATC	3 cut(s)	508, 563, 663
BstMAI	GTCTC	4 cut(s)	103, 146, 233, 362
BstMBI	GATC	3 cut(s)	505, 560, 660
BstNI	CCWGG	1 cut(s)	335
BstNSI	RCATGY	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	333
BstUI	CGCG	2 cut(s)	573, 1008
BstV1I	GCAGC	3 cut(s)	38, 91, 560
BstV2I	GAAGAC	2 cut(s)	548, 804
BstX2I	RGATCY	2 cut(s)	505, 660
BstXI	CCANNNNNNTGG	1 cut(s)	376
BstYI	RGATCY	2 cut(s)	505, 660
BsuRI	GGCC	2 cut(s)	88, 810
BtgI	CCRYGG	1 cut(s)	983
BtgZI	GCGATG	1 cut(s)	549
BtsCI	GGATG	3 cut(s)	197, 364, 552
BtsIMutI	CAGTG	1 cut(s)	486
Cac8I	GCNNGC	1 cut(s)	571
CaiI	CAGNNNCTG	1 cut(s)	485
CfoI	GCGC	2 cut(s)	575, 906
Cfr13I	GGNCC	5 cut(s)	86, 166, 379, 397, 781
CseI	GACGC	2 cut(s)	85, 1014
Csp6I	GTAC	2 cut(s)	223, 638
CviAII	CATG	3 cut(s)	188, 243, 879
CviQI	GTAC	2 cut(s)	223, 638
DdeI	CTNAG	7 cut(s)	75, 162, 179, 576, 689, 907, 975
DpnI	GATC	3 cut(s)	507, 562, 662
DpnII	GATC	3 cut(s)	505, 560, 660
EaeI	YGGCCR	1 cut(s)	808
Eam1104I	CTCTTC	3 cut(s)	146, 273, 924
EarI	CTCTTC	3 cut(s)	146, 273, 924
Eco31I	GGTCTC	2 cut(s)	146, 362
Eco32I	GATATC	1 cut(s)	632
Eco47I	GGWCC	4 cut(s)	166, 379, 397, 781
Eco47III	AGCGCT	1 cut(s)	905
EcoO109I	RGGNCCY	3 cut(s)	166, 397, 781
EcoRII	CCWGG	1 cut(s)	333
EcoRV	GATATC	1 cut(s)	632
Esp3I	CGTCTC	1 cut(s)	103
FaeI	CATG	3 cut(s)	191, 246, 882
FalI	AAGNNNNNCTT	2 cut(s)	648, 680
FaqI	GGGAC	3 cut(s)	152, 327, 383
FatI	CATG	3 cut(s)	187, 242, 878
Fnu4HI	GCNGC	5 cut(s)	52, 67, 105, 285, 549
FokI	GGATG	3 cut(s)	184, 351, 539
Fsp4HI	GCNGC	5 cut(s)	52, 67, 105, 285, 549
FspBI	CTAG	1 cut(s)	233
GlaI	GCGC	2 cut(s)	574, 905
GluI	GCNGC	5 cut(s)	52, 67, 105, 285, 549
GsaI	CCCAGC	2 cut(s)	44, 396
HaeII	RGCGCY	1 cut(s)	907
HaeIII	GGCC	2 cut(s)	88, 810
HapII	CCGG	1 cut(s)	707
HgaI	GACGC	2 cut(s)	85, 1014
HhaI	GCGC	2 cut(s)	575, 906
Hin1I	GRCGYC	1 cut(s)	96
Hin1II	CATG	3 cut(s)	191, 246, 882
Hin6I	GCGC	2 cut(s)	573, 904
HinP1I	GCGC	2 cut(s)	573, 904
HindIII	AAGCTT	1 cut(s)	755
HinfI	GANTC	5 cut(s)	77, 177, 515, 682, 701
HpaII	CCGG	1 cut(s)	707
HphI	GGTGA	1 cut(s)	833
Hpy188I	TCNGA	4 cut(s)	76, 531, 681, 910
Hpy188III	TCNNGA	5 cut(s)	436, 467, 656, 865, 974
HpyAV	CCTTC	4 cut(s)	167, 199, 586, 862
HpyCH4III	ACNGT	4 cut(s)	112, 481, 487, 803
HpyCH4V	TGCA	4 cut(s)	54, 848, 878, 917
HpyF3I	CTNAG	7 cut(s)	75, 162, 179, 576, 689, 907, 975
Hsp92I	GRCGYC	1 cut(s)	96
Hsp92II	CATG	3 cut(s)	191, 246, 882
HspAI	GCGC	2 cut(s)	573, 904
KflI	GGGWCCC	1 cut(s)	397
Kzo9I	GATC	3 cut(s)	505, 560, 660
LmnI	GCTCC	1 cut(s)	37
Lsp1109I	GCAGC	3 cut(s)	38, 91, 560
LweI	GCATC	1 cut(s)	613
MaeI	CTAG	1 cut(s)	233
MaeIII	GTNAC	2 cut(s)	481, 821
MalI	GATC	3 cut(s)	507, 562, 662
MboI	GATC	3 cut(s)	505, 560, 660
MboII	GAAGA	9 cut(s)	133, 290, 510, 515, 553, 592, 809, 938, 941
MflI	RGATCY	2 cut(s)	505, 660
MluCI	AATT	4 cut(s)	17, 145, 462, 583
MlyI	GAGTC	3 cut(s)	86, 171, 695
MmeI	TCCRAC	1 cut(s)	15
MseI	TTAA	2 cut(s)	23, 753
MspCI	CTTAAG	1 cut(s)	22
MspI	CCGG	1 cut(s)	707
MspR9I	CCNGG	1 cut(s)	335
MvaI	CCWGG	1 cut(s)	335
MvnI	CGCG	2 cut(s)	573, 1008
NdeII	GATC	3 cut(s)	505, 560, 660
NlaIII	CATG	3 cut(s)	191, 246, 882
NlaIV	GGNNCC	5 cut(s)	29, 168, 398, 399, 782
NmuCI	GTSAC	2 cut(s)	481, 821
NspI	RCATGY	1 cut(s)	191
PcsI	WCGNNNNNNNCGW	1 cut(s)	943
PfeI	GAWTC	2 cut(s)	515, 682
PflFI	GACNNNGTC	1 cut(s)	180
PkrI	GCNGC	5 cut(s)	53, 68, 106, 286, 550
PleI	GAGTC	3 cut(s)	85, 171, 695
PpsI	GAGTC	3 cut(s)	85, 171, 695
PpuMI	RGGWCCY	3 cut(s)	166, 397, 781
Psp5II	RGGWCCY	3 cut(s)	166, 397, 781
Psp6I	CCWGG	1 cut(s)	333
PspFI	CCCAGC	2 cut(s)	40, 392
PspGI	CCWGG	1 cut(s)	333
PspN4I	GGNNCC	5 cut(s)	29, 168, 398, 399, 782
PspPI	GGNCC	5 cut(s)	86, 166, 379, 397, 781
PspPPI	RGGWCCY	3 cut(s)	166, 397, 781
PstNI	CAGNNNCTG	1 cut(s)	485
PsuI	RGATCY	2 cut(s)	505, 660
PsyI	GACNNNGTC	1 cut(s)	180
RsaI	GTAC	2 cut(s)	224, 639
RsaNI	GTAC	2 cut(s)	223, 638
SaqAI	TTAA	2 cut(s)	23, 753
SatI	GCNGC	5 cut(s)	52, 67, 105, 285, 549
Sau3AI	GATC	3 cut(s)	505, 560, 660
Sau96I	GGNCC	5 cut(s)	86, 166, 379, 397, 781
SchI	GAGTC	3 cut(s)	86, 171, 695
ScrFI	CCNGG	1 cut(s)	335
SetI	ASST	9 cut(s)	29, 42, 141, 161, 168, 217, 759, 776, 823
SfaNI	GCATC	1 cut(s)	613
SinI	GGWCC	4 cut(s)	166, 379, 397, 781
SmlI	CTYRAG	6 cut(s)	22, 210, 308, 414, 775, 863
SmoI	CTYRAG	6 cut(s)	22, 210, 308, 414, 775, 863
SpeI	ACTAGT	1 cut(s)	232
Sse9I	AATT	4 cut(s)	17, 145, 462, 583
SsiI	CCGC	3 cut(s)	66, 284, 891
SspMI	CTAG	1 cut(s)	233
StyD4I	CCNGG	1 cut(s)	333
TaaI	ACNGT	4 cut(s)	112, 481, 487, 803
TaqI	TCGA	3 cut(s)	450, 685, 937
TasI	AATT	4 cut(s)	17, 145, 462, 583
TauI	GCSGC	2 cut(s)	69, 287
TfiI	GAWTC	2 cut(s)	515, 682
Tru1I	TTAA	2 cut(s)	23, 753
Tru9I	TTAA	2 cut(s)	23, 753
TscAI	CASTG	1 cut(s)	486
TseFI	GTSAC	2 cut(s)	481, 821
TseI	GCWGC	3 cut(s)	51, 104, 548
Tsp45I	GTSAC	2 cut(s)	481, 821
TspDTI	ATGAA	4 cut(s)	186, 396, 615, 954
TspRI	CASTG	1 cut(s)	486
Tth111I	GACNNNGTC	1 cut(s)	180
Vha464I	CTTAAG	1 cut(s)	22
VpaK11BI	GGWCC	4 cut(s)	166, 379, 397, 781
XapI	RAATTY	1 cut(s)	17
XceI	RCATGY	1 cut(s)	191
XcmI	CCANNNNNNNNNTGG	2 cut(s)	389, 745
XspI	CTAG	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.